HEADER DNA BINDING PROTEIN 22-AUG-25 9SGV TITLE AP3 TENTATIVE ANCIENT VERSION OF MODERN Z-BINDING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AP3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANCIENT PROTEIN, Z-BINDING DOMAIN, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR P.SRB,V.VEVERKA REVDAT 1 01-JUL-26 9SGV 0 JRNL AUTH V.G.GIACOBELLI,S.ANDRESSON,P.SRB,T.NEUWIRTHOVA,Z.RUSZOVA, JRNL AUTH 2 J.MARHOUL,S.PSENICKA,A.KNETL,L.BEDNAROVA,V.VEVERKA,I.ANDRE, JRNL AUTH 3 Z.HLOUCHOVA JRNL TITL ANCIENT AMINO ACID SETS ENABLE STABLE PROTEIN FOLDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : YASARA REMARK 3 AUTHORS : YASARA BIOSCIENCES GMBH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9SGV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292150349. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 330 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 230 UM [U-100% 13C; U-100% 15N] REMARK 210 AP3, 50 MM SODIUM PHOSPHATE, 280 REMARK 210 MM SODIUM CHLORIDE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCACO; 3D HNCACB; 3D CBCA(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III HD REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, POKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 2 100.17 59.50 REMARK 500 2 GLU A 2 96.72 54.44 REMARK 500 3 SER A 57 -165.04 -167.36 REMARK 500 4 SER A 57 -163.89 -171.61 REMARK 500 5 GLU A 2 85.56 49.58 REMARK 500 6 SER A 57 -159.51 -173.30 REMARK 500 9 SER A 57 -166.70 -164.70 REMARK 500 10 GLU A 2 101.55 51.11 REMARK 500 11 SER A 57 -163.44 -170.74 REMARK 500 12 GLU A 2 95.16 49.66 REMARK 500 12 SER A 57 -158.51 -171.43 REMARK 500 12 LEU A 58 19.37 56.59 REMARK 500 13 ALA A 59 39.63 -91.65 REMARK 500 15 SER A 57 -169.30 -171.23 REMARK 500 16 SER A 57 -165.37 -168.30 REMARK 500 18 SER A 57 -162.52 -171.01 REMARK 500 18 ALA A 59 47.10 -92.13 REMARK 500 21 LEU A 58 18.54 58.05 REMARK 500 22 GLU A 2 82.56 47.56 REMARK 500 26 SER A 57 -164.04 -170.20 REMARK 500 27 SER A 57 -160.32 -170.46 REMARK 500 29 SER A 57 -165.53 -167.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 53280 RELATED DB: BMRB DBREF 9SGV A 1 66 PDB 9SGV 9SGV 1 66 SEQRES 1 A 66 MET GLU THR ALA GLU THR ALA GLU ALA ILE LEU ALA LEU SEQRES 2 A 66 ALA ALA GLU GLY PRO LEU SER LEU ALA GLU ILE ALA GLU SEQRES 3 A 66 ALA LEU GLY LEU PRO LEU PRO THR VAL SER GLU LEU VAL SEQRES 4 A 66 ALA GLU LEU GLU ALA GLU GLY LEU LEU VAL THR ALA PRO SEQRES 5 A 66 ASP GLY SER VAL SER LEU ALA ALA HIS HIS HIS HIS HIS SEQRES 6 A 66 HIS HELIX 1 AA1 GLU A 2 GLY A 17 1 16 HELIX 2 AA2 LEU A 21 GLY A 29 1 9 HELIX 3 AA3 PRO A 31 GLU A 45 1 15 SHEET 1 AA1 3 LEU A 19 SER A 20 0 SHEET 2 AA1 3 SER A 55 SER A 57 -1 O VAL A 56 N LEU A 19 SHEET 3 AA1 3 VAL A 49 THR A 50 -1 N VAL A 49 O SER A 57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MODEL 21 ENDMDL MODEL 22 ENDMDL MODEL 23 ENDMDL MODEL 24 ENDMDL MODEL 25 ENDMDL MODEL 26 ENDMDL MODEL 27 ENDMDL MODEL 28 ENDMDL MODEL 29 ENDMDL MODEL 30 ENDMDL MASTER 127 0 0 3 3 0 0 6 412 1 0 6 END