HEADER SUGAR BINDING PROTEIN 31-AUG-25 9SJK TITLE CRYSTAL STRUCTURE OF APO SUSDDEX (BT3089) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON VPI-5482; SOURCE 3 ORGANISM_TAXID: 226186; SOURCE 4 GENE: BT_3089; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS BT3089, SUSDDEX, SUSD, DEXTRAN, BACTEROIDES, GLYCAN-BINDING, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.FEASEY,A.BASLE,B.VAN DEN BERG REVDAT 1 05-AUG-26 9SJK 0 JRNL AUTH M.FEASEY,A.SILALE,A.BASLE,B.VAN DEN BERG JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF THE DEXTRAN JRNL TITL 2 UTILISOME FROM BACTEROIDES THETAIOTAOMICRON JRNL REF J STRUCT BIOL X 00153 2026 JRNL REFN ESSN 2590-1524 JRNL DOI 10.1016/J.YJSBX.2026.100153 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.88) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 153513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.033 REMARK 3 FREE R VALUE TEST SET COUNT : 7727 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10725 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 491 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 1240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85800 REMARK 3 B22 (A**2) : 0.85800 REMARK 3 B33 (A**2) : -1.71700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.784 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7618 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10352 ; 2.077 ; 1.810 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 930 ; 6.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ; 6.503 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1226 ;12.336 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1110 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5958 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3834 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5328 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 900 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3732 ; 2.166 ; 2.611 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4658 ; 2.732 ; 4.682 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3886 ; 3.949 ; 2.930 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5694 ; 5.525 ; 5.242 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 36 A 503 NULL REMARK 3 1 B 36 B 501 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 9SJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-25. REMARK 100 THE DEPOSITION ID IS D_1292143260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 153600 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 53.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 50.90 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 9.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 53.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 48.50 REMARK 200 R MERGE FOR SHELL (I) : 0.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 75.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID PH 5 0.8M AMMONIUM REMARK 280 SULPHATE CRYOPROTECTED IN 3.5M AMMONIUM SULPHATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.49000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.49000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 88.49000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 88.49000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 27 REMARK 465 GLY A 28 REMARK 465 TYR A 29 REMARK 465 GLY A 30 REMARK 465 VAL A 31 REMARK 465 ASP A 32 REMARK 465 PRO A 33 REMARK 465 GLU A 34 REMARK 465 SER A 35 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 465 MET B 27 REMARK 465 GLY B 28 REMARK 465 TYR B 29 REMARK 465 GLY B 30 REMARK 465 VAL B 31 REMARK 465 ASP B 32 REMARK 465 PRO B 33 REMARK 465 GLU B 34 REMARK 465 SER B 35 REMARK 465 HIS B 499 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG GLU B 74 O HOH B 916 1.72 REMARK 500 OD1 ASN B 352 O HOH B 701 1.92 REMARK 500 ND2 ASN B 352 O2 SO4 B 606 1.96 REMARK 500 OD2 ASP B 67 O HOH B 702 1.99 REMARK 500 OD1 ASP B 282 O HOH B 703 2.04 REMARK 500 O HOH B 702 O HOH B 882 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 136 CG - SD - CE ANGL. DEV. = -38.6 DEGREES REMARK 500 GLU A 203 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 GLU A 203 CB - CG - CD ANGL. DEV. = 22.4 DEGREES REMARK 500 ARG A 208 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 MET A 246 CG - SD - CE ANGL. DEV. = -15.2 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = -4.7 DEGREES REMARK 500 MET B 136 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 208 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 208 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 230 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 MET B 246 CG - SD - CE ANGL. DEV. = -19.5 DEGREES REMARK 500 THR B 365 CA - CB - OG1 ANGL. DEV. = -14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 58 -114.10 -114.57 REMARK 500 GLN A 61 -58.62 -155.04 REMARK 500 ALA A 77 -140.99 52.65 REMARK 500 HIS A 229 78.69 -163.98 REMARK 500 ASN A 312 82.81 79.41 REMARK 500 MET B 58 -113.68 -114.59 REMARK 500 GLN B 61 -58.21 -154.66 REMARK 500 ALA B 77 -141.86 52.96 REMARK 500 HIS B 229 84.46 -156.75 REMARK 500 ASN B 312 82.27 82.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 435 0.09 SIDE CHAIN REMARK 500 ARG B 208 0.07 SIDE CHAIN REMARK 500 ARG B 435 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1323 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A1324 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B1311 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B1312 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B1313 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH B1314 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B1315 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B1316 DISTANCE = 6.83 ANGSTROMS DBREF 9SJK A 29 496 UNP Q8A366 Q8A366_BACTN 29 496 DBREF 9SJK B 29 496 UNP Q8A366 Q8A366_BACTN 29 496 SEQADV 9SJK MET A 27 UNP Q8A366 INITIATING METHIONINE SEQADV 9SJK GLY A 28 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK LEU A 497 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK GLU A 498 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS A 499 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS A 500 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS A 501 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS A 502 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS A 503 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS A 504 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK MET B 27 UNP Q8A366 INITIATING METHIONINE SEQADV 9SJK GLY B 28 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK LEU B 497 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK GLU B 498 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS B 499 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS B 500 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS B 501 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS B 502 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS B 503 UNP Q8A366 EXPRESSION TAG SEQADV 9SJK HIS B 504 UNP Q8A366 EXPRESSION TAG SEQRES 1 A 478 MET GLY TYR GLY VAL ASP PRO GLU SER GLU VAL THR ASN SEQRES 2 A 478 GLU ILE ALA VAL ALA LEU THR THR ALA CYS TYR LYS THR SEQRES 3 A 478 LEU GLN SER SER ASN MET TYR ASN GLN ARG LEU TRP SER SEQRES 4 A 478 LEU ASP ILE LEU ALA GLY ASN SER GLU VAL GLY ALA GLY SEQRES 5 A 478 GLY GLY THR ASP GLY LEU GLU THR VAL GLN ALA ALA ASN SEQRES 6 A 478 PHE ILE ALA GLN SER ASP ASN GLY PHE ALA LEU TYR VAL SEQRES 7 A 478 TRP ARG SER PRO TRP VAL GLY ILE GLY ARG CYS ASN ILE SEQRES 8 A 478 VAL LEU SER ASN LEU PRO SER ALA ALA ILE SER ASP GLU SEQRES 9 A 478 ILE LYS ASP ARG CYS MET GLY GLU ALA TYR PHE LEU ARG SEQRES 10 A 478 ALA HIS TYR TYR TYR ILE LEU VAL ARG LEU TYR GLY GLY SEQRES 11 A 478 VAL PRO LEU ARG LEU GLN PRO PHE GLU PRO GLY GLN SER SEQRES 12 A 478 THR ASP ILE ALA ARG ASN THR VAL ASP GLU VAL TYR ALA SEQRES 13 A 478 GLN ILE LEU SER ASP CYS LYS ASN ALA VAL ASP MET LEU SEQRES 14 A 478 PRO PRO LYS SER SER TYR GLY GLU ASN ASP LYS GLY ARG SEQRES 15 A 478 ALA CYS LYS GLU ALA ALA MET ALA MET LEU ALA ASP ILE SEQRES 16 A 478 TYR LEU THR LEU ALA PRO ASN HIS ARG ASP TYR TYR ASN SEQRES 17 A 478 GLU VAL VAL THR LEU CYS ASP GLN ILE THR ALA MET GLY SEQRES 18 A 478 TYR ASP LEU SER GLN CYS LYS TYR ALA ASP ASN PHE ASP SEQRES 19 A 478 ALA THR ILE ASN ASN GLY ALA GLU SER LEU PHE GLU VAL SEQRES 20 A 478 GLN TYR SER GLY SER THR GLU TYR ASP PHE TRP GLY GLY SEQRES 21 A 478 ASP ASN GLN SER SER TRP LEU SER THR PHE MET GLY PRO SEQRES 22 A 478 ARG ASN SER GLY MET VAL ALA GLY ALA TYR GLY TRP ASN SEQRES 23 A 478 LEU PRO THR GLU GLU PHE ILE LYS GLU TYR GLU ALA GLY SEQRES 24 A 478 ASP LEU ARG LYS ASP VAL THR VAL LEU TYR GLN GLY CYS SEQRES 25 A 478 PRO ALA PHE ASP GLY MET GLU TYR ARG ARG SER TRP SER SEQRES 26 A 478 ASN THR GLY TYR ASN VAL ARG LYS PHE LEU VAL SER LYS SEQRES 27 A 478 THR VAL SER PRO GLU TYR ASN THR ASN PRO ASN ASN PHE SEQRES 28 A 478 VAL VAL TYR ARG TYR ALA ASP VAL LEU LEU LYS LYS ALA SEQRES 29 A 478 GLU ALA LEU ASN GLU LEU GLY HIS PRO ASP GLN ALA ALA SEQRES 30 A 478 ALA PRO LEU ASN ILE VAL ARG GLN ARG ALA GLY LEU ALA SEQRES 31 A 478 ASP VAL PRO THR THR LEU ASN GLN GLU THR MET ARG GLU SEQRES 32 A 478 LYS ILE ILE HIS GLU ARG ARG MET GLU LEU ALA PHE GLU SEQRES 33 A 478 GLY HIS ARG TRP PHE ASP MET ILE ARG ILE ASN ASN GLY SEQRES 34 A 478 ASN TYR ALA ILE GLU PHE LEU LYS SER ILE GLY LYS ASN SEQRES 35 A 478 GLN VAL THR LYS GLU ARG LEU LEU LEU PRO ILE PRO GLN SEQRES 36 A 478 THR GLU MET ASP SER ASN ASN LEU MET THR GLN ASN PRO SEQRES 37 A 478 GLY TYR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 478 MET GLY TYR GLY VAL ASP PRO GLU SER GLU VAL THR ASN SEQRES 2 B 478 GLU ILE ALA VAL ALA LEU THR THR ALA CYS TYR LYS THR SEQRES 3 B 478 LEU GLN SER SER ASN MET TYR ASN GLN ARG LEU TRP SER SEQRES 4 B 478 LEU ASP ILE LEU ALA GLY ASN SER GLU VAL GLY ALA GLY SEQRES 5 B 478 GLY GLY THR ASP GLY LEU GLU THR VAL GLN ALA ALA ASN SEQRES 6 B 478 PHE ILE ALA GLN SER ASP ASN GLY PHE ALA LEU TYR VAL SEQRES 7 B 478 TRP ARG SER PRO TRP VAL GLY ILE GLY ARG CYS ASN ILE SEQRES 8 B 478 VAL LEU SER ASN LEU PRO SER ALA ALA ILE SER ASP GLU SEQRES 9 B 478 ILE LYS ASP ARG CYS MET GLY GLU ALA TYR PHE LEU ARG SEQRES 10 B 478 ALA HIS TYR TYR TYR ILE LEU VAL ARG LEU TYR GLY GLY SEQRES 11 B 478 VAL PRO LEU ARG LEU GLN PRO PHE GLU PRO GLY GLN SER SEQRES 12 B 478 THR ASP ILE ALA ARG ASN THR VAL ASP GLU VAL TYR ALA SEQRES 13 B 478 GLN ILE LEU SER ASP CYS LYS ASN ALA VAL ASP MET LEU SEQRES 14 B 478 PRO PRO LYS SER SER TYR GLY GLU ASN ASP LYS GLY ARG SEQRES 15 B 478 ALA CYS LYS GLU ALA ALA MET ALA MET LEU ALA ASP ILE SEQRES 16 B 478 TYR LEU THR LEU ALA PRO ASN HIS ARG ASP TYR TYR ASN SEQRES 17 B 478 GLU VAL VAL THR LEU CYS ASP GLN ILE THR ALA MET GLY SEQRES 18 B 478 TYR ASP LEU SER GLN CYS LYS TYR ALA ASP ASN PHE ASP SEQRES 19 B 478 ALA THR ILE ASN ASN GLY ALA GLU SER LEU PHE GLU VAL SEQRES 20 B 478 GLN TYR SER GLY SER THR GLU TYR ASP PHE TRP GLY GLY SEQRES 21 B 478 ASP ASN GLN SER SER TRP LEU SER THR PHE MET GLY PRO SEQRES 22 B 478 ARG ASN SER GLY MET VAL ALA GLY ALA TYR GLY TRP ASN SEQRES 23 B 478 LEU PRO THR GLU GLU PHE ILE LYS GLU TYR GLU ALA GLY SEQRES 24 B 478 ASP LEU ARG LYS ASP VAL THR VAL LEU TYR GLN GLY CYS SEQRES 25 B 478 PRO ALA PHE ASP GLY MET GLU TYR ARG ARG SER TRP SER SEQRES 26 B 478 ASN THR GLY TYR ASN VAL ARG LYS PHE LEU VAL SER LYS SEQRES 27 B 478 THR VAL SER PRO GLU TYR ASN THR ASN PRO ASN ASN PHE SEQRES 28 B 478 VAL VAL TYR ARG TYR ALA ASP VAL LEU LEU LYS LYS ALA SEQRES 29 B 478 GLU ALA LEU ASN GLU LEU GLY HIS PRO ASP GLN ALA ALA SEQRES 30 B 478 ALA PRO LEU ASN ILE VAL ARG GLN ARG ALA GLY LEU ALA SEQRES 31 B 478 ASP VAL PRO THR THR LEU ASN GLN GLU THR MET ARG GLU SEQRES 32 B 478 LYS ILE ILE HIS GLU ARG ARG MET GLU LEU ALA PHE GLU SEQRES 33 B 478 GLY HIS ARG TRP PHE ASP MET ILE ARG ILE ASN ASN GLY SEQRES 34 B 478 ASN TYR ALA ILE GLU PHE LEU LYS SER ILE GLY LYS ASN SEQRES 35 B 478 GLN VAL THR LYS GLU ARG LEU LEU LEU PRO ILE PRO GLN SEQRES 36 B 478 THR GLU MET ASP SER ASN ASN LEU MET THR GLN ASN PRO SEQRES 37 B 478 GLY TYR LEU GLU HIS HIS HIS HIS HIS HIS HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 B 601 5 HET SO4 B 602 5 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HET SO4 B 606 5 HET SO4 B 607 5 HET SO4 B 608 5 HET SO4 B 609 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 14(O4 S 2-) FORMUL 17 HOH *1240(H2 O) HELIX 1 AA1 THR A 38 ALA A 48 1 11 HELIX 2 AA2 CYS A 49 SER A 55 5 7 HELIX 3 AA3 SER A 65 ALA A 70 1 6 HELIX 4 AA4 GLY A 83 ASN A 91 1 9 HELIX 5 AA5 ASN A 98 LEU A 122 1 25 HELIX 6 AA6 SER A 128 GLY A 155 1 28 HELIX 7 AA7 THR A 176 LEU A 195 1 20 HELIX 8 AA8 PRO A 197 TYR A 201 5 5 HELIX 9 AA9 CYS A 210 ALA A 226 1 17 HELIX 10 AB1 PRO A 227 ARG A 230 5 4 HELIX 11 AB2 ASP A 231 ALA A 245 1 15 HELIX 12 AB3 ASP A 249 CYS A 253 5 5 HELIX 13 AB4 LYS A 254 ASP A 260 5 7 HELIX 14 AB5 TRP A 292 GLY A 298 1 7 HELIX 15 AB6 THR A 315 GLU A 321 1 7 HELIX 16 AB7 ARG A 328 THR A 332 1 5 HELIX 17 AB8 ARG A 347 SER A 351 5 5 HELIX 18 AB9 TYR A 382 LEU A 396 1 15 HELIX 19 AC1 HIS A 398 ALA A 413 1 16 HELIX 20 AC2 ASN A 423 LEU A 439 1 17 HELIX 21 AC3 HIS A 444 ARG A 451 1 8 HELIX 22 AC4 ILE A 452 ASN A 454 5 3 HELIX 23 AC5 GLY A 455 ILE A 465 1 11 HELIX 24 AC6 LYS A 472 LEU A 476 5 5 HELIX 25 AC7 PRO A 480 ASN A 487 1 8 HELIX 26 AC8 THR B 38 ALA B 48 1 11 HELIX 27 AC9 CYS B 49 SER B 55 5 7 HELIX 28 AD1 GLN B 61 ALA B 70 1 10 HELIX 29 AD2 GLY B 83 ASN B 91 1 9 HELIX 30 AD3 ASN B 98 LEU B 122 1 25 HELIX 31 AD4 SER B 128 GLY B 155 1 28 HELIX 32 AD5 THR B 176 LEU B 195 1 20 HELIX 33 AD6 PRO B 197 TYR B 201 5 5 HELIX 34 AD7 CYS B 210 ALA B 226 1 17 HELIX 35 AD8 PRO B 227 ARG B 230 5 4 HELIX 36 AD9 ASP B 231 ALA B 245 1 15 HELIX 37 AE1 ASP B 249 CYS B 253 5 5 HELIX 38 AE2 LYS B 254 ASP B 260 5 7 HELIX 39 AE3 TRP B 292 GLY B 298 1 7 HELIX 40 AE4 THR B 315 GLU B 321 1 7 HELIX 41 AE5 ARG B 328 THR B 332 1 5 HELIX 42 AE6 ARG B 347 SER B 351 5 5 HELIX 43 AE7 TYR B 382 LEU B 396 1 15 HELIX 44 AE8 HIS B 398 ALA B 413 1 16 HELIX 45 AE9 ASN B 423 LEU B 439 1 17 HELIX 46 AF1 HIS B 444 ARG B 451 1 8 HELIX 47 AF2 ILE B 452 ASN B 454 5 3 HELIX 48 AF3 GLY B 455 ILE B 465 1 11 HELIX 49 AF4 LYS B 472 LEU B 476 5 5 HELIX 50 AF5 PRO B 480 ASN B 487 1 8 SHEET 1 AA1 2 SER A 73 GLY A 76 0 SHEET 2 AA1 2 TRP A 311 PRO A 314 -1 O LEU A 313 N GLU A 74 SHEET 1 AA2 2 SER A 269 VAL A 273 0 SHEET 2 AA2 2 PHE A 377 ARG A 381 -1 O PHE A 377 N VAL A 273 SHEET 1 AA3 2 VAL A 333 LEU A 334 0 SHEET 2 AA3 2 ASN A 356 VAL A 357 -1 O ASN A 356 N LEU A 334 SHEET 1 AA4 2 SER B 73 GLY B 76 0 SHEET 2 AA4 2 TRP B 311 PRO B 314 -1 O LEU B 313 N GLU B 74 SHEET 1 AA5 2 SER B 269 VAL B 273 0 SHEET 2 AA5 2 PHE B 377 ARG B 381 -1 O PHE B 377 N VAL B 273 SHEET 1 AA6 2 VAL B 333 LEU B 334 0 SHEET 2 AA6 2 ASN B 356 VAL B 357 -1 O ASN B 356 N LEU B 334 CRYST1 119.500 119.500 176.980 90.00 90.00 90.00 P 42 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008368 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005650 0.00000 CONECT 7395 7396 7397 7398 7399 CONECT 7396 7395 CONECT 7397 7395 CONECT 7398 7395 CONECT 7399 7395 CONECT 7400 7401 7402 7403 7404 CONECT 7401 7400 CONECT 7402 7400 CONECT 7403 7400 CONECT 7404 7400 CONECT 7405 7406 7407 7408 7409 CONECT 7406 7405 CONECT 7407 7405 CONECT 7408 7405 CONECT 7409 7405 CONECT 7410 7411 7412 7413 7414 CONECT 7411 7410 CONECT 7412 7410 CONECT 7413 7410 CONECT 7414 7410 CONECT 7415 7416 7417 7418 7419 CONECT 7416 7415 CONECT 7417 7415 CONECT 7418 7415 CONECT 7419 7415 CONECT 7420 7421 7422 7423 7424 CONECT 7421 7420 CONECT 7422 7420 CONECT 7423 7420 CONECT 7424 7420 CONECT 7425 7426 7427 7428 7429 CONECT 7426 7425 CONECT 7427 7425 CONECT 7428 7425 CONECT 7429 7425 CONECT 7430 7431 7432 7433 7434 CONECT 7431 7430 CONECT 7432 7430 CONECT 7433 7430 CONECT 7434 7430 CONECT 7435 7436 7437 7438 7439 CONECT 7436 7435 CONECT 7437 7435 CONECT 7438 7435 CONECT 7439 7435 CONECT 7440 7441 7442 7443 7444 CONECT 7441 7440 CONECT 7442 7440 CONECT 7443 7440 CONECT 7444 7440 CONECT 7445 7446 7447 7448 7449 CONECT 7446 7445 CONECT 7447 7445 CONECT 7448 7445 CONECT 7449 7445 CONECT 7450 7451 7452 7453 7454 CONECT 7451 7450 CONECT 7452 7450 CONECT 7453 7450 CONECT 7454 7450 CONECT 7455 7456 7457 7458 7459 CONECT 7456 7455 CONECT 7457 7455 CONECT 7458 7455 CONECT 7459 7455 CONECT 7460 7461 7462 7463 7464 CONECT 7461 7460 CONECT 7462 7460 CONECT 7463 7460 CONECT 7464 7460 MASTER 406 0 14 50 12 0 0 6 8702 2 70 74 END