HEADER RNA BINDING PROTEIN 05-SEP-25 9SLZ TITLE STRUCTURE OF THERMUS THERMOPHILUS LYSYL-TRNA SYNTHETASE COMPLEXED WITH TITLE 2 WILD-TYPE E.COLI TRNALYS(MNM5S2UUU) AND SULPHAMOYL-ANALOGUE OF LYSYL- TITLE 3 ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LYSYL-TRNA SYNTHETASE,LYSRS; COMPND 5 EC: 6.1.1.6; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: WILD-TYPE E. COLI TRNALYS; COMPND 9 CHAIN: T SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: LYSS, TTHA1041; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562 KEYWDS AMINO-ACYL-TRNA SYNTHETASE, TRNA, AMINOACYL-ADENYLATE, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.CUSACK,A.YAREMCHUK,M.TUKALO REVDAT 1 17-SEP-25 9SLZ 0 JRNL AUTH S.CUSACK,A.YAREMCHUK,M.TUKALO JRNL TITL THE CRYSTAL STRUCTURES OF T. THERMOPHILUS LYSYL-TRNA JRNL TITL 2 SYNTHETASE COMPLEXED WITH E. COLI TRNA(LYS) AND A T. JRNL TITL 3 THERMOPHILUS TRNA(LYS) TRANSCRIPT: ANTICODON RECOGNITION AND JRNL TITL 4 CONFORMATIONAL CHANGES UPON BINDING OF A LYSYL-ADENYLATE JRNL TITL 5 ANALOGUE. JRNL REF EMBO J V. 15 6321 1996 JRNL REFN ISSN 0261-4189 JRNL PMID 8947055 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.D.YAREMCHUK,I.A.KRIKLIVIY,S.CUSACK,M.A.TUKALO REMARK 1 TITL COCRYSTALLIZATION OF LYSYL-TRNA SYNTHETASE FROM THERMUS REMARK 1 TITL 2 THERMOPHILUS WITH ITS COGNATE TRNALYS AND WITH ESCHERICHIA REMARK 1 TITL 3 COLI TRNALYS. REMARK 1 REF PROTEINS V. 21 261 1995 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 7540304 REMARK 1 DOI 10.1002/PROT.340210309 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 15932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.285 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3971 REMARK 3 NUCLEIC ACID ATOMS : 411 REMARK 3 HETEROGEN ATOMS : 67 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.94000 REMARK 3 B22 (A**2) : 1.94000 REMARK 3 B33 (A**2) : -6.29200 REMARK 3 B12 (A**2) : 0.97000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.499 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.363 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.574 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.918 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4597 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4123 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6324 ; 0.745 ; 1.868 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9527 ; 0.283 ; 1.764 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 483 ; 5.525 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ; 4.351 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 702 ;12.057 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 693 ; 0.034 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5091 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1045 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 821 ; 0.169 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 163 ; 0.096 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2033 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1940 ; 1.905 ;10.300 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1940 ; 1.905 ;10.300 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2420 ; 3.382 ;18.523 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2421 ; 3.381 ;18.521 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2657 ; 1.867 ;11.621 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2658 ; 1.867 ;11.620 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3904 ; 3.407 ;21.350 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3905 ; 3.407 ;21.347 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9SLZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1292150623. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.885 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15932 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.590 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.0200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24-26% SATURATED AMMONIUM SULPHATE. 50 REMARK 280 MM TRIS-MALEATE (PH 7.6), 10 MM MGCI2, 1 MM NAN3, 4 MG/ML REMARK 280 LYSRSTT, 2.5 MG/ML WT ECOLI TRNALYS AND 325 MICROM LYSAMS. REMARK 280 CRYOPROTECTANT 30% GLYCEROL., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.48333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.96667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.96667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.48333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 501 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 505 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 485 REMARK 465 GLU A 486 REMARK 465 ALA A 487 REMARK 465 VAL A 488 REMARK 465 GLU A 489 REMARK 465 GLU A 490 REMARK 465 GLY A 491 REMARK 465 VAL A 492 REMARK 465 P T 0 REMARK 465 G T 1 REMARK 465 G T 2 REMARK 465 G T 3 REMARK 465 U T 4 REMARK 465 C T 5 REMARK 465 G T 6 REMARK 465 U T 7 REMARK 465 U T 8 REMARK 465 A T 9 REMARK 465 G T 10 REMARK 465 C T 11 REMARK 465 U T 12 REMARK 465 C T 13 REMARK 465 A T 14 REMARK 465 G T 15 REMARK 465 H2U T 16 REMARK 465 H2U T 17 REMARK 465 G T 18 REMARK 465 G T 19 REMARK 465 H2U T 20 REMARK 465 A T 21 REMARK 465 G T 22 REMARK 465 A T 23 REMARK 465 G T 24 REMARK 465 U T 44 REMARK 465 G T 45 REMARK 465 G7M T 46 REMARK 465 U T 47 REMARK 465 C T 48 REMARK 465 G T 49 REMARK 465 C T 50 REMARK 465 A T 51 REMARK 465 G T 52 REMARK 465 G T 53 REMARK 465 5MU T 54 REMARK 465 PSU T 55 REMARK 465 C T 56 REMARK 465 G T 57 REMARK 465 A T 58 REMARK 465 A T 59 REMARK 465 U T 60 REMARK 465 C T 61 REMARK 465 C T 62 REMARK 465 U T 63 REMARK 465 G T 64 REMARK 465 C T 65 REMARK 465 A T 66 REMARK 465 C T 67 REMARK 465 G T 68 REMARK 465 A T 69 REMARK 465 C T 70 REMARK 465 C T 71 REMARK 465 C T 72 REMARK 465 A T 73 REMARK 465 C T 74 REMARK 465 C T 75 REMARK 465 A T 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 40 54.50 -105.08 REMARK 500 LEU A 63 93.80 -160.60 REMARK 500 ASP A 76 -148.80 -98.65 REMARK 500 LEU A 89 -61.99 -162.85 REMARK 500 HIS A 141 -1.18 -150.57 REMARK 500 GLN A 152 72.15 -117.66 REMARK 500 HIS A 292 35.57 -96.77 REMARK 500 LEU A 343 56.41 -94.72 REMARK 500 ASP A 372 75.54 63.19 REMARK 500 SER A 378 89.58 -151.47 REMARK 500 GLU A 386 -67.05 -145.00 REMARK 500 LEU A 403 -63.26 -102.74 REMARK 500 LEU A 457 119.32 -164.91 REMARK 500 ASP A 468 70.95 62.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 9SLZ A 1 492 UNP Q5SJG7 SYK_THET8 1 492 DBREF 9SLZ T 0 76 PDB 9SLZ 9SLZ 0 76 SEQRES 1 A 492 MET ASN ASP GLN THR ARG GLN ARG LEU LEU ASN LEU GLU SEQRES 2 A 492 ALA LEU VAL GLU ALA GLY PHE ALA PRO TYR PRO TYR ARG SEQRES 3 A 492 PHE PRO LYS THR HIS SER ALA GLU ALA ILE LEU LYS ALA SEQRES 4 A 492 LYS ARG GLY ALA PRO PRO GLU SER GLU TRP PRO GLU GLU SEQRES 5 A 492 GLU VAL ALA VAL ALA GLY ARG LEU VAL ALA LEU ARG ARG SEQRES 6 A 492 MET GLY LYS VAL THR PHE ALA HIS LEU LEU ASP GLU THR SEQRES 7 A 492 GLY ARG ILE GLN LEU TYR PHE GLN ARG ASP LEU THR PRO SEQRES 8 A 492 LYS TYR GLU LEU LEU LYS LYS LEU ASP VAL GLY ASP ILE SEQRES 9 A 492 LEU GLY VAL ARG GLY HIS PRO PHE THR THR LYS THR GLY SEQRES 10 A 492 GLU VAL THR VAL LYS VAL LEU ASP TRP THR PRO LEU VAL SEQRES 11 A 492 LYS SER LEU HIS PRO LEU PRO ASP LYS TRP HIS GLY LEU SEQRES 12 A 492 ARG ASP LYS GLU VAL ARG TYR ARG GLN ARG TYR LEU ASP SEQRES 13 A 492 LEU ILE VAL ASN PRO GLU VAL ARG GLU VAL PHE ARG ARG SEQRES 14 A 492 ARG SER GLU ILE VAL ARG TYR ILE ARG ARG PHE PHE GLU SEQRES 15 A 492 ALA LYS GLY PHE LEU GLU VAL GLU THR PRO ILE LEU GLN SEQRES 16 A 492 PRO THR THR GLY GLY ALA GLU ALA ARG PRO PHE LYS THR SEQRES 17 A 492 TYR HIS ASN ALA LEU ASP HIS GLU PHE TYR LEU ARG ILE SEQRES 18 A 492 SER LEU GLU LEU TYR LEU LYS ARG LEU LEU VAL GLY GLY SEQRES 19 A 492 TYR GLU LYS VAL PHE GLU ILE GLY ARG ASN PHE ARG ASN SEQRES 20 A 492 GLU GLY ILE ASP HIS ASN HIS ASN PRO GLU PHE THR MET SEQRES 21 A 492 LEU GLU ALA TYR TRP ALA TYR ALA ASP TYR GLN ASP MET SEQRES 22 A 492 ALA GLY LEU VAL GLU GLU LEU LEU SER GLY LEU VAL LEU SEQRES 23 A 492 HIS LEU PHE GLY SER HIS GLU VAL PRO TYR GLN GLY ARG SEQRES 24 A 492 VAL LEU ASN PHE LYS PRO PRO PHE ARG ARG ILE SER PHE SEQRES 25 A 492 VAL GLU ALA LEU LYS GLU LYS ALA GLY LEU PRO PHE ASP SEQRES 26 A 492 PRO LEU ASP LEU GLU ARG LEU ARG LEU TRP ALA ASP ALA SEQRES 27 A 492 HIS HIS PRO GLU LEU SER GLN VAL PRO ASN TYR LYS LEU SEQRES 28 A 492 LEU ASP LYS LEU PHE GLY ILE TYR VAL GLU PRO GLU LEU SEQRES 29 A 492 GLN ASP PRO THR PHE VAL PHE ASP PHE PRO LEU ALA ILE SEQRES 30 A 492 SER PRO LEU ALA LYS ARG HIS ARG GLU LYS PRO GLY LEU SEQRES 31 A 492 VAL GLU ARG TRP ASP LEU TYR ALA GLY GLY MET GLU LEU SEQRES 32 A 492 ALA PRO CYS TYR SER GLU LEU ASN ASP PRO LEU ASP GLN SEQRES 33 A 492 ARG GLU ARG PHE LEU GLU GLN ALA ARG ARG ARG LYS GLU SEQRES 34 A 492 GLY ASP GLU GLU ALA PRO GLU PRO ASP GLU ASP PHE LEU SEQRES 35 A 492 LEU ALA LEU GLU TYR GLY MET PRO PRO ALA ALA GLY LEU SEQRES 36 A 492 GLY LEU GLY ILE ASP ARG LEU ALA MET LEU LEU THR ASP SEQRES 37 A 492 GLN PRO SER LEU ARG ASP VAL LEU LEU PHE PRO LEU LEU SEQRES 38 A 492 LYS PRO LYS LYS GLU ALA VAL GLU GLU GLY VAL SEQRES 1 T 77 P G G G U C G U U A G C U SEQRES 2 T 77 C A G H2U H2U G G H2U A G A G C SEQRES 3 T 77 A G U U G A C U U8U U U T6A A SEQRES 4 T 77 PSU C A A U U G G7M U C G C A SEQRES 5 T 77 G G 5MU PSU C G A A U C C U G SEQRES 6 T 77 C A C G A C C C A C C A HET U8U T 34 23 HET T6A T 37 32 HET PSU T 39 20 HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET KAA A 508 32 HETNAM U8U 5-METHYLAMINOMETHYL-2-THIOURIDINE-5'-MONOPHOSPHATE HETNAM T6A N-[N-(9-B-D-RIBOFURANOSYLPURIN-6-YL) HETNAM 2 T6A CARBAMOYL]THREONINE-5'-MONOPHOSPHATE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM KAA 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE HETSYN T6A N-(NEBULARIN-6-YLCARBAMOYL)-L-THREONINE-5'- HETSYN 2 T6A MONOPHOSPHATE HETSYN KAA 5'-O-[N-(L-LYSYL)SULFAMOYL]ADENOSINE FORMUL 2 U8U C11 H18 N3 O8 P S FORMUL 2 T6A C15 H21 N6 O11 P FORMUL 2 PSU C9 H13 N2 O9 P FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 KAA C16 H26 N8 O7 S HELIX 1 AA1 ASN A 2 GLY A 19 1 18 HELIX 2 AA2 SER A 32 LYS A 40 1 9 HELIX 3 AA3 TYR A 93 LEU A 99 5 7 HELIX 4 AA4 ASP A 145 GLN A 152 1 8 HELIX 5 AA5 GLN A 152 ASN A 160 1 9 HELIX 6 AA6 ASN A 160 LYS A 184 1 25 HELIX 7 AA7 LEU A 223 GLY A 234 1 12 HELIX 8 AA8 ASP A 269 PHE A 289 1 21 HELIX 9 AA9 PHE A 312 GLY A 321 1 10 HELIX 10 AB1 ASP A 328 HIS A 340 1 13 HELIX 11 AB2 PRO A 341 SER A 344 5 4 HELIX 12 AB3 LYS A 350 VAL A 360 1 11 HELIX 13 AB4 GLU A 361 LEU A 364 5 4 HELIX 14 AB5 ASP A 412 ASP A 431 1 20 HELIX 15 AB6 ASP A 438 MET A 449 1 12 HELIX 16 AB7 ILE A 459 ASP A 468 1 10 HELIX 17 AB8 SER A 471 VAL A 475 5 5 SHEET 1 AA1 6 VAL A 54 MET A 66 0 SHEET 2 AA1 6 VAL A 69 LEU A 75 -1 O LEU A 75 N ARG A 59 SHEET 3 AA1 6 ARG A 80 GLN A 86 -1 O ILE A 81 N LEU A 74 SHEET 4 AA1 6 VAL A 119 VAL A 130 1 O VAL A 121 N GLN A 82 SHEET 5 AA1 6 ILE A 104 THR A 113 -1 N PHE A 112 O THR A 120 SHEET 6 AA1 6 VAL A 54 MET A 66 -1 N VAL A 54 O GLY A 109 SHEET 1 AA2 4 LEU A 187 GLU A 188 0 SHEET 2 AA2 4 LYS A 237 PHE A 245 1 O PHE A 239 N LEU A 187 SHEET 3 AA2 4 GLU A 257 ALA A 266 -1 O TYR A 264 N VAL A 238 SHEET 4 AA2 4 ALA A 452 GLY A 458 -1 O LEU A 455 N ALA A 263 SHEET 1 AA3 3 LEU A 194 GLN A 195 0 SHEET 2 AA3 3 HIS A 215 LEU A 219 -1 O TYR A 218 N GLN A 195 SHEET 3 AA3 3 LYS A 207 HIS A 210 -1 N THR A 208 O PHE A 217 SHEET 1 AA4 2 GLU A 293 PRO A 295 0 SHEET 2 AA4 2 VAL A 300 ASN A 302 -1 O LEU A 301 N VAL A 294 SHEET 1 AA5 4 ARG A 308 SER A 311 0 SHEET 2 AA5 4 THR A 368 PHE A 371 1 O PHE A 369 N ARG A 308 SHEET 3 AA5 4 ARG A 393 TYR A 397 -1 O TYR A 397 N THR A 368 SHEET 4 AA5 4 GLU A 402 TYR A 407 -1 O LEU A 403 N LEU A 396 LINK O3' U T 33 P U8U T 34 1555 1555 1.61 LINK O3' U8U T 34 P U T 35 1555 1555 1.61 LINK O3' U T 36 P T6A T 37 1555 1555 1.61 LINK O3' T6A T 37 P A T 38 1555 1555 1.61 LINK O3' A T 38 P PSU T 39 1555 1555 1.61 LINK O3' PSU T 39 P C T 40 1555 1555 1.61 CISPEP 1 PRO A 305 PRO A 306 0 -4.43 CRYST1 147.300 147.300 127.450 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006789 0.003920 0.000000 0.00000 SCALE2 0.000000 0.007839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007846 0.00000 CONECT 4151 4183 CONECT 4163 4164 4170 4174 CONECT 4164 4163 4165 4166 CONECT 4165 4164 CONECT 4166 4164 4167 CONECT 4167 4166 4168 4169 CONECT 4168 4167 CONECT 4169 4167 4170 4171 CONECT 4170 4163 4169 CONECT 4171 4169 4172 CONECT 4172 4171 4173 CONECT 4173 4172 CONECT 4174 4163 4176 4180 CONECT 4175 4176 CONECT 4176 4174 4175 4178 CONECT 4177 4178 4186 CONECT 4178 4176 4177 4179 CONECT 4179 4178 4180 4181 CONECT 4180 4174 4179 CONECT 4181 4179 4182 CONECT 4182 4181 4183 CONECT 4183 4151 4182 4184 4185 CONECT 4184 4183 CONECT 4185 4183 CONECT 4186 4177 CONECT 4214 4226 CONECT 4226 4214 4227 4228 4229 CONECT 4227 4226 CONECT 4228 4226 CONECT 4229 4226 4230 CONECT 4230 4229 4231 CONECT 4231 4230 4232 4233 CONECT 4232 4231 4237 CONECT 4233 4231 4234 4235 CONECT 4234 4233 4258 CONECT 4235 4233 4236 4237 CONECT 4236 4235 CONECT 4237 4232 4235 4238 CONECT 4238 4237 4239 4247 CONECT 4239 4238 4240 CONECT 4240 4239 4241 CONECT 4241 4240 4242 4247 CONECT 4242 4241 4243 4244 CONECT 4243 4242 4248 CONECT 4244 4242 4245 CONECT 4245 4244 4246 CONECT 4246 4245 4247 CONECT 4247 4238 4241 4246 CONECT 4248 4243 4249 4250 CONECT 4249 4248 CONECT 4250 4248 4251 CONECT 4251 4250 4252 4255 CONECT 4252 4251 4253 4254 CONECT 4253 4252 CONECT 4254 4252 CONECT 4255 4251 4256 4257 CONECT 4256 4255 CONECT 4257 4255 CONECT 4258 4234 CONECT 4266 4297 CONECT 4280 4281 4285 CONECT 4281 4280 4282 4286 CONECT 4282 4281 4283 CONECT 4283 4282 4284 4287 CONECT 4284 4283 4285 4288 CONECT 4285 4280 4284 CONECT 4286 4281 CONECT 4287 4283 CONECT 4288 4284 4289 4294 CONECT 4289 4288 4290 4291 CONECT 4290 4289 CONECT 4291 4289 4292 4293 CONECT 4292 4291 4294 4295 CONECT 4293 4291 4300 CONECT 4294 4288 4292 CONECT 4295 4292 4296 CONECT 4296 4295 4297 CONECT 4297 4266 4296 4298 4299 CONECT 4298 4297 CONECT 4299 4297 CONECT 4300 4293 CONECT 4385 4386 4387 4388 4389 CONECT 4386 4385 CONECT 4387 4385 CONECT 4388 4385 CONECT 4389 4385 CONECT 4390 4391 4392 4393 4394 CONECT 4391 4390 CONECT 4392 4390 CONECT 4393 4390 CONECT 4394 4390 CONECT 4395 4396 4397 4398 4399 CONECT 4396 4395 CONECT 4397 4395 CONECT 4398 4395 CONECT 4399 4395 CONECT 4400 4401 4402 4403 4404 CONECT 4401 4400 CONECT 4402 4400 CONECT 4403 4400 CONECT 4404 4400 CONECT 4405 4406 4407 4408 4409 CONECT 4406 4405 CONECT 4407 4405 CONECT 4408 4405 CONECT 4409 4405 CONECT 4410 4411 4412 4413 4414 CONECT 4411 4410 CONECT 4412 4410 CONECT 4413 4410 CONECT 4414 4410 CONECT 4415 4416 4417 4418 4419 CONECT 4416 4415 CONECT 4417 4415 CONECT 4418 4415 CONECT 4419 4415 CONECT 4420 4421 CONECT 4421 4420 4422 CONECT 4422 4421 4423 CONECT 4423 4422 4424 CONECT 4424 4423 4425 CONECT 4425 4424 4426 4427 CONECT 4426 4425 CONECT 4427 4425 4428 4429 CONECT 4428 4427 CONECT 4429 4427 4430 CONECT 4430 4429 4431 4432 4433 CONECT 4431 4430 CONECT 4432 4430 CONECT 4433 4430 4434 CONECT 4434 4433 4435 CONECT 4435 4434 4436 4437 CONECT 4436 4435 4441 CONECT 4437 4435 4438 4439 CONECT 4438 4437 CONECT 4439 4437 4440 4441 CONECT 4440 4439 CONECT 4441 4436 4439 4442 CONECT 4442 4441 4443 4446 CONECT 4443 4442 4444 CONECT 4444 4443 4445 CONECT 4445 4444 4446 4450 CONECT 4446 4442 4445 4447 CONECT 4447 4446 4448 CONECT 4448 4447 4449 CONECT 4449 4448 4450 CONECT 4450 4445 4449 4451 CONECT 4451 4450 MASTER 368 0 11 17 19 0 0 6 4449 2 148 44 END