HEADER LIGASE 10-SEP-25 9SNI TITLE CTLH-CRA DOMAIN OF MURINE TWA1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-INDUCED DEGRADATION PROTEIN 8 HOMOLOG; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: TWO HYBRID-ASSOCIATED PROTEIN 1 WITH RANBPM,TWA1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: GID8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL KEYWDS CTLH COMPLEX, GID COMPLEX, E3 LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.M.VAN GEN HASSEND,H.SCHINDELIN REVDAT 1 18-FEB-26 9SNI 0 JRNL AUTH P.M.VAN GEN HASSEND,H.SCHINDELIN JRNL TITL ENGINEERING CTLH-CRA DOMAINS WITH SWAPPED BINDING JRNL TITL 2 SPECIFICITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 76.8 REMARK 3 NUMBER OF REFLECTIONS : 18249 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.210 REMARK 3 FREE R VALUE TEST SET COUNT : 950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8800 - 4.0400 1.00 3411 179 0.1880 0.2258 REMARK 3 2 4.0400 - 3.2100 1.00 3249 172 0.2495 0.2580 REMARK 3 3 3.2100 - 2.8000 1.00 3196 186 0.3103 0.3280 REMARK 3 4 2.8000 - 2.5500 1.00 3177 187 0.3380 0.3379 REMARK 3 5 2.5500 - 2.3600 0.78 2456 138 0.3325 0.3414 REMARK 3 6 2.3600 - 2.2200 0.46 1445 76 0.3544 0.3775 REMARK 3 7 2.2200 - 2.1130 0.11 365 12 0.3662 0.3693 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.258 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.301 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2132 REMARK 3 ANGLE : 0.390 2877 REMARK 3 CHIRALITY : 0.030 322 REMARK 3 PLANARITY : 0.005 382 REMARK 3 DIHEDRAL : 13.548 827 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9SNI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1292150702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.113 REMARK 200 RESOLUTION RANGE LOW (A) : 46.882 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 25.00 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS 8.0, 1.6 M POTASSIUM SODIUM REMARK 280 TARTRATE, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.24500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.42150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.42150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 14.12250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.42150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.42150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.36750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.42150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.42150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 14.12250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.42150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.42150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.36750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.24500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWA1 SHOWED MASS FOR A STABLE MONOMER IN OUR SEC-MALS REMARK 300 MEASUREMENTS. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 56 REMARK 465 PRO B 57 REMARK 465 SER B 58 REMARK 465 VAL B 59 REMARK 465 ASP B 60 REMARK 465 LEU B 61 REMARK 465 GLU B 187 REMARK 465 SER B 188 REMARK 465 THR B 189 REMARK 465 PRO B 190 REMARK 465 ARG A 186 REMARK 465 GLU A 187 REMARK 465 SER A 188 REMARK 465 THR A 189 REMARK 465 PRO A 190 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 136 115.38 -165.68 REMARK 500 ASN A 97 75.95 -116.60 REMARK 500 REMARK 500 REMARK: NULL DBREF 9SNI B 57 190 UNP Q9D7M1 GID8_MOUSE 57 190 DBREF 9SNI A 57 190 UNP Q9D7M1 GID8_MOUSE 57 190 SEQADV 9SNI GLY B 56 UNP Q9D7M1 EXPRESSION TAG SEQADV 9SNI GLY A 56 UNP Q9D7M1 EXPRESSION TAG SEQRES 1 B 135 GLY PRO SER VAL ASP LEU GLU THR LEU ASP GLU ARG ILE SEQRES 2 B 135 LYS ILE ARG GLU MET ILE LEU LYS GLY GLN ILE GLN GLU SEQRES 3 B 135 ALA ILE ALA LEU ILE ASN SER LEU HIS PRO GLU LEU LEU SEQRES 4 B 135 ASP THR ASN ARG TYR LEU TYR PHE HIS LEU GLN GLN GLN SEQRES 5 B 135 HIS LEU ILE GLU LEU ILE ARG GLN ARG GLU THR GLU ALA SEQRES 6 B 135 ALA LEU GLU PHE ALA GLN THR GLN LEU ALA GLU GLN GLY SEQRES 7 B 135 GLU GLU SER ARG GLU CYS LEU THR GLU MET GLU ARG THR SEQRES 8 B 135 LEU ALA LEU LEU ALA PHE ASP SER PRO GLU GLU SER PRO SEQRES 9 B 135 PHE GLY ASP LEU LEU HIS MET MET GLN ARG GLN LYS VAL SEQRES 10 B 135 TRP SER GLU VAL ASN GLN ALA VAL LEU ASP TYR GLU ASN SEQRES 11 B 135 ARG GLU SER THR PRO SEQRES 1 A 135 GLY PRO SER VAL ASP LEU GLU THR LEU ASP GLU ARG ILE SEQRES 2 A 135 LYS ILE ARG GLU MET ILE LEU LYS GLY GLN ILE GLN GLU SEQRES 3 A 135 ALA ILE ALA LEU ILE ASN SER LEU HIS PRO GLU LEU LEU SEQRES 4 A 135 ASP THR ASN ARG TYR LEU TYR PHE HIS LEU GLN GLN GLN SEQRES 5 A 135 HIS LEU ILE GLU LEU ILE ARG GLN ARG GLU THR GLU ALA SEQRES 6 A 135 ALA LEU GLU PHE ALA GLN THR GLN LEU ALA GLU GLN GLY SEQRES 7 A 135 GLU GLU SER ARG GLU CYS LEU THR GLU MET GLU ARG THR SEQRES 8 A 135 LEU ALA LEU LEU ALA PHE ASP SER PRO GLU GLU SER PRO SEQRES 9 A 135 PHE GLY ASP LEU LEU HIS MET MET GLN ARG GLN LYS VAL SEQRES 10 A 135 TRP SER GLU VAL ASN GLN ALA VAL LEU ASP TYR GLU ASN SEQRES 11 A 135 ARG GLU SER THR PRO HELIX 1 AA1 THR B 63 LYS B 76 1 14 HELIX 2 AA2 GLN B 78 HIS B 90 1 13 HELIX 3 AA3 GLU B 92 ASN B 97 1 6 HELIX 4 AA4 ASN B 97 GLN B 115 1 19 HELIX 5 AA5 GLU B 117 SER B 136 1 20 HELIX 6 AA6 ARG B 137 LEU B 140 5 4 HELIX 7 AA7 THR B 141 LEU B 150 1 10 HELIX 8 AA8 SER B 154 SER B 158 5 5 HELIX 9 AA9 PHE B 160 LEU B 164 5 5 HELIX 10 AB1 HIS B 165 ASN B 185 1 21 HELIX 11 AB2 THR A 63 LYS A 76 1 14 HELIX 12 AB3 GLN A 78 HIS A 90 1 13 HELIX 13 AB4 GLU A 92 ASN A 97 1 6 HELIX 14 AB5 ASN A 97 GLN A 115 1 19 HELIX 15 AB6 GLU A 117 SER A 136 1 20 HELIX 16 AB7 THR A 141 ALA A 151 1 11 HELIX 17 AB8 SER A 154 SER A 158 5 5 HELIX 18 AB9 PHE A 160 HIS A 165 5 6 HELIX 19 AC1 MET A 166 GLU A 184 1 19 CRYST1 118.843 118.843 56.490 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017702 0.00000 MASTER 256 0 0 19 0 0 0 6 2101 2 0 22 END