HEADER SUGAR BINDING PROTEIN 16-SEP-25 9SP7 TITLE HUMAN GALACTOSYLTRANSFERASE B3GALT6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-1,3-GALACTOSYLTRANSFERASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-1,3-GALTASE 6,BETA3GAL-T6,BETA3GALT6,GAG GALTII, COMPND 5 GALACTOSYLTRANSFERASE II,GALACTOSYLXYLOSYLPROTEIN 3-BETA- COMPND 6 GALACTOSYLTRANSFERASE,UDP-GAL:BETAGAL BETA 1,3-GALACTOSYLTRANSFERASE COMPND 7 POLYPEPTIDE 6; COMPND 8 EC: 2.4.1.134; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: B3GALT6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS ENZYME, PROTEOGLYCAN, GLYCOCONJUGATE, GLYCOSYLTRANSFERASE, SUGAR KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.WEYAND,C.UNVERZAGT REVDAT 2 28-JAN-26 9SP7 1 JRNL REVDAT 1 10-DEC-25 9SP7 0 JRNL AUTH S.WEIDLER,O.BUNDGAARD,M.HESSEFORT,M.RADISCH,C.G.F.GRAF, JRNL AUTH 2 K.LAM,V.J.NEUBAUER,J.EISENREICH,L.KOHLER,K.W.MOREMEN, JRNL AUTH 3 C.STEENTOFT,H.CLAUSEN,T.Y.HUANG,S.C.HUNG,C.STEEGBORN, JRNL AUTH 4 M.WEYAND,C.UNVERZAGT JRNL TITL HUMAN PROTEOGLYCAN LINKAGE REGION GLYCOSYLTRANSFERASES ARE JRNL TITL 2 DIMERIC AND SHOW UNEXPECTED SPECIFICITIES. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 65 16855 2026 JRNL REFN ESSN 1521-3773 JRNL PMID 41316887 JRNL DOI 10.1002/ANIE.202516855 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.06 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 106950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7752 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.5450 REMARK 3 BIN FREE R VALUE SET COUNT : 82 REMARK 3 BIN FREE R VALUE : 0.5710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2222 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 373 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.51000 REMARK 3 B22 (A**2) : 0.71000 REMARK 3 B33 (A**2) : -3.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.222 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2720 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2557 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3729 ; 1.874 ; 1.867 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5856 ; 0.679 ; 1.800 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 354 ; 6.890 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;11.255 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 452 ;13.112 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 379 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3563 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 773 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1264 ; 3.501 ; 1.159 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1264 ; 3.499 ; 1.159 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1595 ; 5.248 ; 2.087 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1596 ; 5.246 ; 2.087 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1456 ; 4.175 ; 1.381 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1449 ; 4.177 ; 1.381 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2103 ; 6.195 ; 2.445 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3114 ;13.690 ;14.640 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2996 ;12.875 ;12.960 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5277 ; 4.237 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6067 9.2059 58.5083 REMARK 3 T TENSOR REMARK 3 T11: 0.0121 T22: 0.0015 REMARK 3 T33: 0.1056 T12: 0.0011 REMARK 3 T13: -0.0186 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.3889 L22: 0.5628 REMARK 3 L33: 1.8392 L12: -0.0324 REMARK 3 L13: -0.2263 L23: -0.5406 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.0011 S13: 0.0413 REMARK 3 S21: -0.0026 S22: 0.0023 S23: 0.0365 REMARK 3 S31: -0.1088 S32: 0.0073 S33: -0.0156 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9SP7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1292150855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.006364 REMARK 200 MONOCHROMATOR : DCM SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 208815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.870 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.53 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.410 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 4000, 20% (V/V) REMARK 280 ISOPROPANOL, 0.1 M SODIUM CITRATE, PH 5.6, EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.62500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.73000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.62500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.73000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.54000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.62500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.73000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.54000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.62500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.73000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 151.08000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 807 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 820 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 ASP A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 ALA A 41 REMARK 465 MET A 42 REMARK 465 SER A 43 REMARK 465 GLY A 44 REMARK 465 ARG A 45 REMARK 465 SER A 46 REMARK 465 PRO A 47 REMARK 465 PRO A 48 REMARK 465 PRO A 49 REMARK 465 PRO A 50 REMARK 465 ALA A 51 REMARK 465 PRO A 52 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 83 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 115 CZ NH1 NH2 REMARK 470 ARG A 191 NE CZ NH1 NH2 REMARK 470 LYS A 193 CE NZ REMARK 470 ILE A 328 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 93 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 162 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LEU A 210 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG A 229 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 232 NE - CZ - NH2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 256 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR A 310 CB - CG - CD1 ANGL. DEV. = 4.0 DEGREES REMARK 500 TYR A 310 CZ - CE2 - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 CYS A 322 CB - CA - C ANGL. DEV. = 8.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 79 -101.58 -123.65 REMARK 500 ASP A 127 59.84 -99.55 REMARK 500 SER A 309 -169.26 -103.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 321 CYS A 322 -142.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 106 0.10 SIDE CHAIN REMARK 500 ARG A 107 0.12 SIDE CHAIN REMARK 500 ARG A 126 0.17 SIDE CHAIN REMARK 500 ARG A 173 0.11 SIDE CHAIN REMARK 500 ARG A 177 0.15 SIDE CHAIN REMARK 500 ARG A 189 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 871 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 872 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 873 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ASP A 158 OD1 121.2 REMARK 620 3 HIS A 279 NE2 94.4 88.1 REMARK 620 N 1 2 DBREF 9SP7 A 36 329 UNP Q96L58 B3GT6_HUMAN 36 329 SEQRES 1 A 294 PRO GLY ASP PRO ARG ALA MET SER GLY ARG SER PRO PRO SEQRES 2 A 294 PRO PRO ALA PRO ALA ARG ALA ALA ALA PHE LEU ALA VAL SEQRES 3 A 294 LEU VAL ALA SER ALA PRO ARG ALA ALA GLU ARG ARG SER SEQRES 4 A 294 VAL ILE ARG SER THR TRP LEU ALA ARG ARG GLY ALA PRO SEQRES 5 A 294 GLY ASP VAL TRP ALA ARG PHE ALA VAL GLY THR ALA GLY SEQRES 6 A 294 LEU GLY ALA GLU GLU ARG ARG ALA LEU GLU ARG GLU GLN SEQRES 7 A 294 ALA ARG HIS GLY ASP LEU LEU LEU LEU PRO ALA LEU ARG SEQRES 8 A 294 ASP ALA TYR GLU ASN LEU THR ALA LYS VAL LEU ALA MET SEQRES 9 A 294 LEU ALA TRP LEU ASP GLU HIS VAL ALA PHE GLU PHE VAL SEQRES 10 A 294 LEU LYS ALA ASP ASP ASP SER PHE ALA ARG LEU ASP ALA SEQRES 11 A 294 LEU LEU ALA GLU LEU ARG ALA ARG GLU PRO ALA ARG ARG SEQRES 12 A 294 ARG ARG LEU TYR TRP GLY PHE PHE SER GLY ARG GLY ARG SEQRES 13 A 294 VAL LYS PRO GLY GLY ARG TRP ARG GLU ALA ALA TRP GLN SEQRES 14 A 294 LEU CYS ASP TYR TYR LEU PRO TYR ALA LEU GLY GLY GLY SEQRES 15 A 294 TYR VAL LEU SER ALA ASP LEU VAL HIS TYR LEU ARG LEU SEQRES 16 A 294 SER ARG ASP TYR LEU ARG ALA TRP HIS SER GLU ASP VAL SEQRES 17 A 294 SER LEU GLY ALA TRP LEU ALA PRO VAL ASP VAL GLN ARG SEQRES 18 A 294 GLU HIS ASP PRO ARG PHE ASP THR GLU TYR ARG SER ARG SEQRES 19 A 294 GLY CYS SER ASN GLN TYR LEU VAL THR HIS LYS GLN SER SEQRES 20 A 294 LEU GLU ASP MET LEU GLU LYS HIS ALA THR LEU ALA ARG SEQRES 21 A 294 GLU GLY ARG LEU CYS LYS ARG GLU VAL GLN LEU ARG LEU SEQRES 22 A 294 SER TYR VAL TYR ASP TRP SER ALA PRO PRO SER GLN CYS SEQRES 23 A 294 CYS GLN ARG ARG GLU GLY ILE PRO HET MN A 401 1 HET MLI A 402 14 HETNAM MN MANGANESE (II) ION HETNAM MLI MALONATE ION FORMUL 2 MN MN 2+ FORMUL 3 MLI C3 H2 O4 2- FORMUL 4 HOH *373(H2 O) HELIX 1 AA1 ALA A 69 THR A 79 1 11 HELIX 2 AA2 GLY A 102 GLY A 117 1 16 HELIX 3 AA3 LEU A 132 HIS A 146 1 15 HELIX 4 AA4 ARG A 162 ARG A 173 1 12 HELIX 5 AA5 GLU A 174 ARG A 179 1 6 HELIX 6 AA6 GLY A 196 ALA A 201 5 6 HELIX 7 AA7 ALA A 222 ARG A 232 1 11 HELIX 8 AA8 ASP A 233 LEU A 235 5 3 HELIX 9 AA9 SER A 240 LEU A 249 1 10 HELIX 10 AB1 SER A 282 GLY A 297 1 16 HELIX 11 AB2 PRO A 317 CYS A 321 5 5 SHEET 1 AA1 2 ALA A 55 ALA A 56 0 SHEET 2 AA1 2 VAL A 147 ALA A 148 1 O ALA A 148 N ALA A 55 SHEET 1 AA2 7 LEU A 119 LEU A 122 0 SHEET 2 AA2 7 VAL A 90 GLY A 97 1 N PHE A 94 O LEU A 120 SHEET 3 AA2 7 LEU A 59 ALA A 64 1 N VAL A 61 O TRP A 91 SHEET 4 AA2 7 PHE A 151 ASP A 156 1 O PHE A 151 N ALA A 60 SHEET 5 AA2 7 GLY A 217 SER A 221 -1 O TYR A 218 N LYS A 154 SHEET 6 AA2 7 LEU A 181 GLY A 184 -1 N TRP A 183 O VAL A 219 SHEET 7 AA2 7 GLN A 255 HIS A 258 1 O GLN A 255 N TYR A 182 SHEET 1 AA3 3 PHE A 160 ALA A 161 0 SHEET 2 AA3 3 VAL A 277 THR A 278 -1 O THR A 278 N PHE A 160 SHEET 3 AA3 3 PHE A 262 ASP A 263 1 N ASP A 263 O VAL A 277 SHEET 1 AA4 2 PHE A 186 SER A 187 0 SHEET 2 AA4 2 TYR A 212 ALA A 213 -1 O TYR A 212 N SER A 187 SHEET 1 AA5 2 GLY A 270 CYS A 271 0 SHEET 2 AA5 2 VAL A 304 GLN A 305 -1 O VAL A 304 N CYS A 271 SSBOND 1 CYS A 206 CYS A 206 1555 4556 2.13 SSBOND 2 CYS A 271 CYS A 300 1555 1555 2.03 SSBOND 3 CYS A 321 CYS A 322 1555 1555 2.10 LINK OD2 ASP A 156 MN MN A 401 1555 1555 2.31 LINK OD1 ASP A 158 MN MN A 401 1555 1555 2.17 LINK NE2BHIS A 279 MN MN A 401 1555 1555 1.98 CRYST1 59.250 77.460 151.080 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016878 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006619 0.00000 CONECT 902 2609 CONECT 917 2609 CONECT 2081 2355 CONECT 2172 2609 CONECT 2355 2081 CONECT 2542 2548 CONECT 2548 2542 CONECT 2609 902 917 2172 CONECT 2610 2612 2614 CONECT 2611 2613 2615 CONECT 2612 2610 2616 2618 CONECT 2613 2611 2617 2619 CONECT 2614 2610 2620 2622 CONECT 2615 2611 2621 2623 CONECT 2616 2612 CONECT 2617 2613 CONECT 2618 2612 CONECT 2619 2613 CONECT 2620 2614 CONECT 2621 2615 CONECT 2622 2614 CONECT 2623 2615 MASTER 431 0 2 11 16 0 0 6 2603 1 22 23 END