HEADER CHAPERONE 25-SEP-25 9SRV TITLE PARTIAL CRYO-EM STRUCTURE OF ESSENTIAL MYCOPLASMA PNEUMONIAE TITLE 2 LIPOPROTEIN MPN436 (FLEXIBLE LOOPS EXCLUDED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED LIPOPROTEIN MG307 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMOIDES PNEUMONIAE M129; SOURCE 3 ORGANISM_TAXID: 272634; SOURCE 4 GENE: MPN_436, A05_ORF1244, MP405; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PPIASE CHAPERONE MYCOPLASMA PNEUMONIAE LIPOPROTEIN, CHAPERONE EXPDTA ELECTRON MICROSCOPY AUTHOR S.MANGER,I.KELES REVDAT 1 07-OCT-26 9SRV 0 JRNL AUTH S.MANGER,I.KELES,A.S.FRANGAKIS,M.P.SCHEFFER,M.S.MANTANYA JRNL TITL STRUCTURES OF THE ESSENTIAL MYCOPLASMA PNEUMONIAE JRNL TITL 2 LIPOPROTEINS MPN444 AND MPN436 REVEAL A PEPTIDYL-PROLYL JRNL TITL 3 ISOMERASE DOMAIN INVOLVED IN EXTRACELLULAR PROTEIN FOLDING JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, CRYOSPARC, ISOLDE, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC, PHENIX, COOT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.650 REMARK 3 NUMBER OF PARTICLES : 468211 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9SRV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1292151091. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ESSENTIAL MYCOPLASMA PNEUMONIAE REMARK 245 LIPOPROTEIN MPN436 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.80 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NOMINAL BLOT FORCE -3 WAIT TIME REMARK 245 10 S BLOTTING TIME 8-14 S. REMARK 245 BEFORE FREEZING, WHATMAN 595 REMARK 245 FILTER PAPERS WERE INCUBATED REMARK 245 FOR 1 H IN THE VITROBOT CHAMBER REMARK 245 AT 100% RELATIVE HUMIDITY AND REMARK 245 278K. REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -26 REMARK 465 LYS A -25 REMARK 465 LYS A -24 REMARK 465 PHE A -23 REMARK 465 LEU A -22 REMARK 465 ARG A -21 REMARK 465 LYS A -20 REMARK 465 PRO A -19 REMARK 465 GLN A -18 REMARK 465 PHE A -17 REMARK 465 TRP A -16 REMARK 465 LEU A -15 REMARK 465 LEU A -14 REMARK 465 THR A -13 REMARK 465 LEU A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 PHE A -9 REMARK 465 LEU A -8 REMARK 465 SER A -7 REMARK 465 THR A -6 REMARK 465 SER A -5 REMARK 465 VAL A -4 REMARK 465 ILE A -3 REMARK 465 LEU A -2 REMARK 465 ALA A -1 REMARK 465 ALA A 0 REMARK 465 CYS A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 ASN A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 GLN A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 PHE A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 ARG A 16 REMARK 465 GLY A 258 REMARK 465 GLU A 259 REMARK 465 GLY A 260 REMARK 465 ALA A 261 REMARK 465 ILE A 262 REMARK 465 THR A 263 REMARK 465 ASP A 264 REMARK 465 ASN A 265 REMARK 465 ASN A 266 REMARK 465 ILE A 267 REMARK 465 GLY A 268 REMARK 465 GLN A 269 REMARK 465 SER A 270 REMARK 465 GLY A 271 REMARK 465 THR A 272 REMARK 465 ASN A 337 REMARK 465 ASP A 338 REMARK 465 GLU A 339 REMARK 465 LEU A 340 REMARK 465 PRO A 341 REMARK 465 GLN A 342 REMARK 465 ILE A 343 REMARK 465 LYS A 344 REMARK 465 GLU A 345 REMARK 465 LEU A 346 REMARK 465 LYS A 347 REMARK 465 GLU A 348 REMARK 465 ASP A 349 REMARK 465 LEU A 350 REMARK 465 ASN A 351 REMARK 465 ASN A 352 REMARK 465 THR A 353 REMARK 465 ILE A 354 REMARK 465 VAL A 355 REMARK 465 VAL A 356 REMARK 465 ASP A 357 REMARK 465 LYS A 358 REMARK 465 SER A 359 REMARK 465 LYS A 360 REMARK 465 ASP A 361 REMARK 465 VAL A 362 REMARK 465 GLU A 363 REMARK 465 LYS A 364 REMARK 465 ALA A 365 REMARK 465 SER A 366 REMARK 465 LYS A 367 REMARK 465 THR A 368 REMARK 465 ASN A 369 REMARK 465 ALA A 370 REMARK 465 LEU A 371 REMARK 465 PHE A 372 REMARK 465 TYR A 373 REMARK 465 ASN A 374 REMARK 465 ASP A 375 REMARK 465 GLN A 376 REMARK 465 GLU A 377 REMARK 465 GLY A 378 REMARK 465 LYS A 379 REMARK 465 GLN A 380 REMARK 465 GLN A 381 REMARK 465 GLN A 382 REMARK 465 SER A 383 REMARK 465 ASP A 384 REMARK 465 SER A 385 REMARK 465 ASP A 386 REMARK 465 PRO A 387 REMARK 465 ILE A 388 REMARK 465 ALA A 389 REMARK 465 GLY A 390 REMARK 465 ALA A 391 REMARK 465 LEU A 392 REMARK 465 ASP A 393 REMARK 465 ASP A 394 REMARK 465 ILE A 395 REMARK 465 PHE A 396 REMARK 465 ALA A 397 REMARK 465 GLN A 398 REMARK 465 ASN A 399 REMARK 465 THR A 400 REMARK 465 SER A 401 REMARK 465 GLU A 402 REMARK 465 GLY A 403 REMARK 465 THR A 404 REMARK 465 ASN A 405 REMARK 465 LEU A 406 REMARK 465 SER A 407 REMARK 465 LYS A 408 REMARK 465 LEU A 409 REMARK 465 ALA A 410 REMARK 465 GLU A 411 REMARK 465 GLN A 412 REMARK 465 VAL A 413 REMARK 465 LYS A 414 REMARK 465 LYS A 415 REMARK 465 ALA A 416 REMARK 465 ALA A 417 REMARK 465 ALA A 418 REMARK 465 THR A 419 REMARK 465 LYS A 420 REMARK 465 MET A 421 REMARK 465 GLU A 422 REMARK 465 ALA A 423 REMARK 465 LYS A 424 REMARK 465 THR A 425 REMARK 465 ALA A 426 REMARK 465 VAL A 427 REMARK 465 LEU A 428 REMARK 465 ARG A 429 REMARK 465 THR A 430 REMARK 465 ASN A 431 REMARK 465 ASN A 432 REMARK 465 SER A 433 REMARK 465 LYS A 434 REMARK 465 GLY A 435 REMARK 465 GLN A 436 REMARK 465 GLN A 437 REMARK 465 ASN A 438 REMARK 465 ASN A 439 REMARK 465 TYR A 440 REMARK 465 VAL A 441 REMARK 465 VAL A 442 REMARK 465 LEU A 443 REMARK 465 ASP A 444 REMARK 465 ALA A 445 REMARK 465 ALA A 446 REMARK 465 ILE A 447 REMARK 465 PRO A 448 REMARK 465 THR A 449 REMARK 465 PHE A 450 REMARK 465 ASN A 451 REMARK 465 SER A 452 REMARK 465 THR A 453 REMARK 465 THR A 454 REMARK 465 SER A 455 REMARK 465 LYS A 456 REMARK 465 SER A 457 REMARK 465 LYS A 458 REMARK 465 ASN A 459 REMARK 465 ASN A 460 REMARK 465 SER A 461 REMARK 465 ALA A 462 REMARK 465 SER A 463 REMARK 465 ASN A 464 REMARK 465 GLU A 465 REMARK 465 VAL A 466 REMARK 465 LEU A 467 REMARK 465 VAL A 468 REMARK 465 ALA A 469 REMARK 465 LEU A 470 REMARK 465 LYS A 471 REMARK 465 SER A 472 REMARK 465 GLY A 473 REMARK 465 SER A 474 REMARK 465 ILE A 475 REMARK 465 ASN A 476 REMARK 465 LEU A 477 REMARK 465 ARG A 478 REMARK 465 GLN A 479 REMARK 465 VAL A 480 REMARK 465 GLN A 481 REMARK 465 GLN A 482 REMARK 465 THR A 483 REMARK 465 ASP A 484 REMARK 465 GLN A 485 REMARK 465 ASN A 486 REMARK 465 SER A 487 REMARK 465 TYR A 488 REMARK 465 SER A 489 REMARK 465 PRO A 490 REMARK 465 GLN A 516 REMARK 465 ASP A 517 REMARK 465 SER A 518 REMARK 465 THR A 519 REMARK 465 ASN A 520 REMARK 465 LYS A 521 REMARK 465 LYS A 522 REMARK 465 SER A 523 REMARK 465 VAL A 524 REMARK 465 SER A 525 REMARK 465 LYS A 526 REMARK 465 GLN A 527 REMARK 465 SER A 528 REMARK 465 LEU A 529 REMARK 465 THR A 530 REMARK 465 LEU A 531 REMARK 465 LEU A 532 REMARK 465 THR A 533 REMARK 465 LYS A 534 REMARK 465 SER A 535 REMARK 465 SER A 536 REMARK 465 SER A 537 REMARK 465 GLY A 538 REMARK 465 ASN A 539 REMARK 465 SER A 540 REMARK 465 ASN A 541 REMARK 465 LYS A 542 REMARK 465 VAL A 543 REMARK 465 ARG A 653 REMARK 465 ALA A 654 REMARK 465 ARG A 655 REMARK 465 ASN A 656 REMARK 465 LEU A 657 REMARK 465 ASN A 658 REMARK 465 GLN A 659 REMARK 465 ASN A 660 REMARK 465 VAL A 661 REMARK 465 ASN A 662 REMARK 465 GLN A 663 REMARK 465 ALA A 664 REMARK 465 ASN A 665 REMARK 465 PRO A 666 REMARK 465 THR A 667 REMARK 465 PRO A 668 REMARK 465 TRP A 669 REMARK 465 LEU A 670 REMARK 465 TYR A 951 REMARK 465 PHE A 952 REMARK 465 ASN A 953 REMARK 465 TYR A 954 REMARK 465 GLU A 955 REMARK 465 ASN A 956 REMARK 465 SER A 957 REMARK 465 ALA A 958 REMARK 465 SER A 959 REMARK 465 GLU A 960 REMARK 465 VAL A 961 REMARK 465 THR A 982 REMARK 465 VAL A 983 REMARK 465 GLN A 984 REMARK 465 ALA A 985 REMARK 465 ILE A 986 REMARK 465 GLN A 987 REMARK 465 GLN A 988 REMARK 465 VAL A 989 REMARK 465 ALA A 990 REMARK 465 SER A 991 REMARK 465 LEU A 992 REMARK 465 ALA A 993 REMARK 465 LEU A 994 REMARK 465 VAL A 995 REMARK 465 GLN A 996 REMARK 465 LYS A 997 REMARK 465 GLN A 998 REMARK 465 GLN A 999 REMARK 465 MET A 1000 REMARK 465 GLN A 1001 REMARK 465 GLN A 1002 REMARK 465 ASN A 1003 REMARK 465 SER A 1004 REMARK 465 ALA A 1121 REMARK 465 GLN A 1122 REMARK 465 LYS A 1123 REMARK 465 SER A 1124 REMARK 465 GLN A 1125 REMARK 465 ARG A 1126 REMARK 465 ASP A 1127 REMARK 465 SER A 1128 REMARK 465 THR A 1129 REMARK 465 PRO A 1130 REMARK 465 SER A 1131 REMARK 465 GLY A 1132 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 158 HH TYR A 512 1.32 REMARK 500 OD1 ASP A 309 HG SER A 311 1.54 REMARK 500 HG SER A 200 O LEU A 292 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 497 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 730 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 756 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A1026 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A1208 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 107 34.50 -143.71 REMARK 500 ILE A 216 -41.98 -132.07 REMARK 500 LYS A 223 -24.08 56.89 REMARK 500 ASP A 224 -157.05 -70.41 REMARK 500 PHE A 232 74.69 -116.97 REMARK 500 ASN A 246 40.13 -103.53 REMARK 500 ASN A 249 -3.74 -59.79 REMARK 500 GLU A 285 -39.43 -147.32 REMARK 500 LYS A 288 -0.40 62.90 REMARK 500 ASP A 293 77.75 -152.31 REMARK 500 ASN A 302 -48.05 64.41 REMARK 500 PHE A 493 -172.07 -62.15 REMARK 500 PHE A 575 79.75 -152.15 REMARK 500 ALA A 600 96.45 -66.38 REMARK 500 SER A 601 69.51 -68.40 REMARK 500 THR A 700 -56.06 -152.28 REMARK 500 PRO A 703 -16.05 -49.88 REMARK 500 ASN A 717 -3.17 62.15 REMARK 500 TYR A 759 3.80 55.45 REMARK 500 ASN A 769 14.60 57.61 REMARK 500 SER A 832 10.34 50.14 REMARK 500 ASN A 868 5.50 57.29 REMARK 500 LYS A 885 42.85 -86.53 REMARK 500 THR A 936 56.20 -68.61 REMARK 500 ASN A 943 57.53 -119.22 REMARK 500 THR A 965 -60.28 -98.79 REMARK 500 PHE A 973 -175.15 -63.57 REMARK 500 PHE A 974 75.02 -65.28 REMARK 500 TYR A 975 151.75 -47.81 REMARK 500 TYR A1008 108.74 -48.03 REMARK 500 SER A1079 -29.33 60.29 REMARK 500 ASN A1168 47.97 -85.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 497 0.10 SIDE CHAIN REMARK 500 TYR A 512 0.07 SIDE CHAIN REMARK 500 TYR A 619 0.07 SIDE CHAIN REMARK 500 TYR A 850 0.08 SIDE CHAIN REMARK 500 TYR A 862 0.07 SIDE CHAIN REMARK 500 TYR A 902 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-55148 RELATED DB: EMDB DBREF 9SRV A -26 1217 UNP P75342 Y436_MYCPN 1 1244 SEQRES 1 A 1244 MET LYS LYS PHE LEU ARG LYS PRO GLN PHE TRP LEU LEU SEQRES 2 A 1244 THR LEU GLY GLY PHE LEU SER THR SER VAL ILE LEU ALA SEQRES 3 A 1244 ALA CYS ALA THR PRO SER ASN SER ALA LEU GLN THR VAL SEQRES 4 A 1244 PHE LYS ALA ARG SER SER GLN PHE PHE ASN GLY GLU GLN SEQRES 5 A 1244 GLY SER LEU GLN SER ALA LEU THR THR ALA LEU LYS ASN SEQRES 6 A 1244 PRO VAL ALA ASN LYS GLN PHE ILE ALA ALA PRO LEU LEU SEQRES 7 A 1244 LYS ALA LEU GLU ALA TRP TYR GLU ASN ASN GLU ASP LYS SEQRES 8 A 1244 LYS ILE THR GLN PHE LEU LYS ASP THR LYS SER ASN VAL SEQRES 9 A 1244 ASP SER GLN TYR THR THR ALA VAL ASP LYS VAL VAL SER SEQRES 10 A 1244 ALA SER ARG ASN LYS SER LEU PHE VAL GLN GLN ASP LEU SEQRES 11 A 1244 LEU ASP ASN ALA GLY GLY SER GLU ALA THR TRP LYS ALA SEQRES 12 A 1244 GLN LYS LEU LEU GLU GLN LEU ILE SER ASP PHE ALA SER SEQRES 13 A 1244 ARG VAL PHE GLN LYS ASN TYR LEU ASN TYR LYS LYS ASP SEQRES 14 A 1244 GLY GLN VAL SER THR GLY PRO PHE THR TYR ASP GLU LEU SEQRES 15 A 1244 HIS LYS GLU GLU SER TRP LYS ASN PHE GLU PHE SER ALA SEQRES 16 A 1244 PRO ARG PHE SER GLU THR ASN ASP ASP PHE PHE ALA LYS SEQRES 17 A 1244 ILE GLN SER GLN VAL PHE ASP GLN TRP VAL GLU TYR THR SEQRES 18 A 1244 ASP PRO THR LEU ILE SER GLN VAL ASN TYR LYS TYR SER SEQRES 19 A 1244 ALA PRO SER GLN GLY LEU GLY GLN ILE TYR ASN ARG GLU SEQRES 20 A 1244 LYS LEU LYS ASP LYS LEU THR PRO SER TYR ALA PHE PRO SEQRES 21 A 1244 PHE PHE ALA GLU GLU LYS ASP ILE ALA PRO ASN GLN ASN SEQRES 22 A 1244 VAL GLY ASN LYS ARG TRP LYS GLN LEU VAL LYS GLY GLU SEQRES 23 A 1244 GLY ALA ILE THR ASP ASN ASN ILE GLY GLN SER GLY THR SEQRES 24 A 1244 ASN SER GLN LYS THR GLY LEU LEU LYS TYR ARG ASN GLU SEQRES 25 A 1244 SER ASN LYS GLY ASP PHE LEU ASP PHE PRO LEU ASN LEU SEQRES 26 A 1244 SER ASP THR ASN GLU THR LYS GLN LEU VAL ASP ALA SER SEQRES 27 A 1244 ASN ILE VAL ASP GLN LEU GLU ALA ALA ASN LEU GLY ALA SEQRES 28 A 1244 ALA LEU ASN LEU LYS LEU GLN VAL PHE GLU GLN ASP ASN SEQRES 29 A 1244 ASP GLU LEU PRO GLN ILE LYS GLU LEU LYS GLU ASP LEU SEQRES 30 A 1244 ASN ASN THR ILE VAL VAL ASP LYS SER LYS ASP VAL GLU SEQRES 31 A 1244 LYS ALA SER LYS THR ASN ALA LEU PHE TYR ASN ASP GLN SEQRES 32 A 1244 GLU GLY LYS GLN GLN GLN SER ASP SER ASP PRO ILE ALA SEQRES 33 A 1244 GLY ALA LEU ASP ASP ILE PHE ALA GLN ASN THR SER GLU SEQRES 34 A 1244 GLY THR ASN LEU SER LYS LEU ALA GLU GLN VAL LYS LYS SEQRES 35 A 1244 ALA ALA ALA THR LYS MET GLU ALA LYS THR ALA VAL LEU SEQRES 36 A 1244 ARG THR ASN ASN SER LYS GLY GLN GLN ASN ASN TYR VAL SEQRES 37 A 1244 VAL LEU ASP ALA ALA ILE PRO THR PHE ASN SER THR THR SEQRES 38 A 1244 SER LYS SER LYS ASN ASN SER ALA SER ASN GLU VAL LEU SEQRES 39 A 1244 VAL ALA LEU LYS SER GLY SER ILE ASN LEU ARG GLN VAL SEQRES 40 A 1244 GLN GLN THR ASP GLN ASN SER TYR SER PRO ILE LYS PHE SEQRES 41 A 1244 ARG ILE VAL ARG ASN SER THR GLY VAL THR VAL PHE GLY SEQRES 42 A 1244 LEU ASP GLY GLY SER TYR TYR LEU LYS GLN ASP SER THR SEQRES 43 A 1244 ASN LYS LYS SER VAL SER LYS GLN SER LEU THR LEU LEU SEQRES 44 A 1244 THR LYS SER SER SER GLY ASN SER ASN LYS VAL LEU ARG SEQRES 45 A 1244 ASP LEU ASP LYS GLN LYS GLN PHE LEU LYS PHE ARG ALA SEQRES 46 A 1244 PHE GLN ALA LYS THR ASN THR PHE TYR SER THR ASN PHE SEQRES 47 A 1244 ALA PHE SER PHE PRO LEU ASN GLU THR LEU LYS SER TRP SEQRES 48 A 1244 PHE ASP LYS HIS ARG GLU LEU ILE LEU ALA ASN ALA LEU SEQRES 49 A 1244 VAL ASN ALA SER LEU ASP GLN LYS ASP LYS ALA SER LYS SEQRES 50 A 1244 ALA LEU THR GLU ALA PHE ASN PRO TYR LYS GLU LEU ILE SEQRES 51 A 1244 LYS GLU PHE ALA PRO VAL ALA LEU ALA THR THR MET ILE SEQRES 52 A 1244 SER PHE TYR PHE ASP GLN MET LYS ALA LEU ASN ASN LYS SEQRES 53 A 1244 LEU LEU GLU ARG ALA ARG ASN LEU ASN GLN ASN VAL ASN SEQRES 54 A 1244 GLN ALA ASN PRO THR PRO TRP LEU ASN GLY LEU SER ALA SEQRES 55 A 1244 LYS LEU PRO TYR VAL ASN THR ASN GLY ASN TYR GLU LYS SEQRES 56 A 1244 LEU ASN ASN TYR PHE THR PHE LEU ILE THR LYS THR LEU SEQRES 57 A 1244 TRP PRO LYS VAL GLY GLN GLU GLU THR SER ILE SER GLU SEQRES 58 A 1244 GLU SER ASN LYS LEU LYS THR LYS THR ALA ASP VAL ASP SEQRES 59 A 1244 LYS ILE ARG ASP LYS ILE LEU GLU ASN ILE GLN THR LYS SEQRES 60 A 1244 VAL ASN ASP PHE VAL LYS ASN LYS LEU LYS PRO ALA LEU SEQRES 61 A 1244 ALA PRO ARG PRO ALA TYR SER ASN VAL ILE LEU LEU ASN SEQRES 62 A 1244 VAL ASN ASN ASP LYS VAL LEU SER SER GLY ALA ASN TRP SEQRES 63 A 1244 SER LEU ALA SER LEU LEU GLN SER ASP LYS VAL ASN PRO SEQRES 64 A 1244 LEU SER PHE MET LEU LEU LYS GLN ALA PHE ASP ASN ASN SEQRES 65 A 1244 ASP LEU PHE LYS LYS ALA GLN LYS LEU PHE LYS ASP ILE SEQRES 66 A 1244 GLN GLU LYS SER SER ASN ASN GLY GLY MET GLN SER SER SEQRES 67 A 1244 SER THR THR ASN SER ASP ALA ASP ALA LEU SER LYS VAL SEQRES 68 A 1244 ILE GLY ASN TYR TYR TYR THR THR TRP ALA LYS LEU THR SEQRES 69 A 1244 ASP LYS SER ILE TYR GLY ASN PRO LYS ASP ASN LYS PHE SEQRES 70 A 1244 ASP GLU LEU PHE LYS LEU ALA PHE GLU ALA SER ILE ASP SEQRES 71 A 1244 GLU LYS SER PHE ASN VAL ASP TYR LYS ALA VAL ILE ASP SEQRES 72 A 1244 HIS TYR ARG PHE ILE TYR THR LEU GLN TRP LEU VAL ASP SEQRES 73 A 1244 GLN LYS LEU LYS ASN PHE LYS SER LEU LEU LYS THR ASN SEQRES 74 A 1244 LEU LYS PHE GLY GLU VAL ALA PHE ILE ALA TYR LYS ASN SEQRES 75 A 1244 THR GLU THR THR ASN PHE SER ASN PRO GLN GLY VAL PHE SEQRES 76 A 1244 GLY SER TYR PHE ASN TYR GLU ASN SER ALA SER GLU VAL SEQRES 77 A 1244 LYS GLU SER THR GLN THR LEU ASP PRO ASN ASN PHE PHE SEQRES 78 A 1244 TYR LYS THR THR THR LYS PRO THR VAL GLN ALA ILE GLN SEQRES 79 A 1244 GLN VAL ALA SER LEU ALA LEU VAL GLN LYS GLN GLN MET SEQRES 80 A 1244 GLN GLN ASN SER THR ASP HIS TYR GLY PHE THR GLY LEU SEQRES 81 A 1244 SER THR SER THR SER SER MET PHE ASP ALA SER SER ARG SEQRES 82 A 1244 ASP ALA ILE LEU GLN GLN ILE THR LYS THR SER LEU GLN SEQRES 83 A 1244 GLN TYR GLY SER LYS ASP GLN LEU LYS LYS ILE ILE GLN SEQRES 84 A 1244 GLY THR ASN ASN GLN LEU LEU LEU ASP ARG ILE ALA VAL SEQRES 85 A 1244 GLN LEU SER GLY LEU ASN PRO SER THR THR ASN GLY GLY SEQRES 86 A 1244 SER GLY LYS THR ILE ALA THR TYR PHE GLN VAL ASP ALA SEQRES 87 A 1244 VAL GLY ASN PRO THR LEU ASP PHE GLN ALA LYS ARG LYS SEQRES 88 A 1244 LEU LEU LEU ASP LEU LEU ASP GLN TYR GLN ASN TYR PHE SEQRES 89 A 1244 GLY ASN GLY ALA GLN LYS SER GLN ARG ASP SER THR PRO SEQRES 90 A 1244 SER GLY THR GLY ASN TYR LEU THR TYR GLN ASN GLY SER SEQRES 91 A 1244 ASP LYS TYR THR TYR THR GLN PHE THR TYR GLN ASP ILE SEQRES 92 A 1244 ASP SER LEU SER LEU THR THR THR SER GLY THR ASN ASN SEQRES 93 A 1244 LYS ILE ALA SER ASP VAL VAL ALA ALA LEU LEU LEU PHE SEQRES 94 A 1244 GLN ALA ALA ASP LYS GLY THR GLN GLN LEU ALA LEU SER SEQRES 95 A 1244 ALA ILE ASN LYS PRO GLN LEU ASN ILE GLY ASP LYS ARG SEQRES 96 A 1244 ILE GLU SER GLY LEU LYS LEU LEU LYS HELIX 1 AA1 GLY A 23 GLY A 26 5 4 HELIX 2 AA2 SER A 27 ASN A 38 1 12 HELIX 3 AA3 ASN A 42 ASN A 61 1 20 HELIX 4 AA4 ASP A 63 VAL A 89 1 27 HELIX 5 AA5 LYS A 95 LEU A 103 1 9 HELIX 6 AA6 LEU A 104 GLY A 108 5 5 HELIX 7 AA7 SER A 110 VAL A 131 1 22 HELIX 8 AA8 THR A 151 HIS A 156 1 6 HELIX 9 AA9 LYS A 157 LYS A 162 5 6 HELIX 10 AB1 ASN A 175 ASP A 195 1 21 HELIX 11 AB2 GLY A 212 ILE A 216 5 5 HELIX 12 AB3 ARG A 251 LYS A 257 1 7 HELIX 13 AB4 THR A 277 ARG A 283 5 7 HELIX 14 AB5 PRO A 295 SER A 299 5 5 HELIX 15 AB6 ASN A 312 LEU A 317 1 6 HELIX 16 AB7 GLU A 318 PHE A 333 1 16 HELIX 17 AB8 GLY A 509 LEU A 514 5 6 HELIX 18 AB9 ASP A 546 ASN A 564 1 19 HELIX 19 AC1 SER A 568 ALA A 572 5 5 HELIX 20 AC2 PRO A 576 ASP A 586 1 11 HELIX 21 AC3 HIS A 588 ALA A 600 1 13 HELIX 22 AC4 ASP A 606 ASN A 617 1 12 HELIX 23 AC5 TYR A 619 GLU A 652 1 34 HELIX 24 AC6 TYR A 686 LYS A 699 1 14 HELIX 25 AC7 LEU A 701 GLY A 706 1 6 HELIX 26 AC8 LYS A 722 LEU A 749 1 28 HELIX 27 AC9 ASP A 770 LEU A 785 1 16 HELIX 28 AD1 ASN A 791 ASN A 804 1 14 HELIX 29 AD2 ASN A 805 SER A 822 1 18 HELIX 30 AD3 SER A 823 GLY A 827 5 5 HELIX 31 AD4 SER A 830 THR A 834 5 5 HELIX 32 AD5 SER A 836 ILE A 845 1 10 HELIX 33 AD6 ILE A 845 LEU A 856 1 12 HELIX 34 AD7 LYS A 859 GLY A 863 5 5 HELIX 35 AD8 PRO A 865 LYS A 869 5 5 HELIX 36 AD9 PHE A 870 ASP A 883 1 14 HELIX 37 AE1 ASP A 890 LEU A 923 1 34 HELIX 38 AE2 ASP A 969 PHE A 973 5 5 HELIX 39 AE3 ASP A 1022 LYS A 1035 1 14 HELIX 40 AE4 LEU A 1038 GLY A 1042 5 5 HELIX 41 AE5 SER A 1043 THR A 1054 1 12 HELIX 42 AE6 ASN A 1056 LEU A 1070 1 15 HELIX 43 AE7 SER A 1073 GLY A 1077 5 5 HELIX 44 AE8 THR A 1082 PHE A 1087 1 6 HELIX 45 AE9 ASP A 1098 LEU A 1110 1 13 HELIX 46 AF1 ASP A 1111 TYR A 1113 5 3 HELIX 47 AF2 ASP A 1155 LEU A 1159 5 5 HELIX 48 AF3 ALA A 1172 ALA A 1185 1 14 HELIX 49 AF4 ASP A 1186 ALA A 1196 1 11 HELIX 50 AF5 ASP A 1206 LEU A 1216 1 11 SHEET 1 AA1 3 GLN A 144 VAL A 145 0 SHEET 2 AA1 3 LEU A 137 LYS A 141 -1 N LYS A 141 O GLN A 144 SHEET 3 AA1 3 PHE A 164 PHE A 166 -1 O GLU A 165 N ASN A 138 SHEET 1 AA2 4 LYS A 305 VAL A 308 0 SHEET 2 AA2 4 THR A 197 LYS A 205 -1 N ILE A 199 O GLN A 306 SHEET 3 AA2 4 GLY A 501 LEU A 507 -1 O GLY A 506 N SER A 200 SHEET 4 AA2 4 ARG A 494 ARG A 497 -1 N ARG A 494 O PHE A 505 SHEET 1 AA3 2 GLU A 714 GLU A 715 0 SHEET 2 AA3 2 LYS A 718 LEU A 719 -1 O LYS A 718 N GLU A 715 SHEET 1 AA4 2 ALA A 752 LEU A 753 0 SHEET 2 AA4 2 LEU A 765 ASN A 766 -1 O ASN A 766 N ALA A 752 SHEET 1 AA5 4 PHE A1010 THR A1015 0 SHEET 2 AA5 4 ALA A 929 TYR A 933 -1 N PHE A 930 O SER A1014 SHEET 3 AA5 4 ASP A1144 PHE A1151 -1 O THR A1149 N ILE A 931 SHEET 4 AA5 4 LEU A1137 ASN A1141 -1 N TYR A1139 O TYR A1146 CISPEP 1 GLY A 148 PRO A 149 0 5.75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 524 0 0 50 15 0 0 6 7508 1 0 96 END