HEADER HYDROLASE 26-SEP-25 9ST7 TITLE BSTEII IN COMPLEX WITH DSDNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BSTEII; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*CP*TP*AP*CP*AP*TP*TP*GP*GP*TP*TP*AP*CP*CP*T)- COMPND 7 3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*AP*TP*GP*TP*AP*G)-3'); COMPND 12 CHAIN: C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 GENE: BSTEIIR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 9 ORGANISM_TAXID: 1422; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 14 ORGANISM_TAXID: 1422; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS RESTRICTION ENDONUCLEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.ZHANG,H.YUAN,S.RETY,X.G.XI REVDAT 1 07-OCT-26 9ST7 0 JRNL AUTH J.H.ZHANG,S.RETY,X.G.XI JRNL TITL CRYSTAL STRUCTURE OF RESTRICTION ENDONUCLEASE BSTEII BOUND JRNL TITL 2 TO DNA SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.2 REMARK 3 NUMBER OF REFLECTIONS : 41922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2063 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.9400 - 3.5400 0.94 4061 197 0.1523 0.1810 REMARK 3 2 3.5400 - 2.8100 0.97 3991 235 0.1724 0.2222 REMARK 3 3 2.8100 - 2.4500 0.86 3510 207 0.1965 0.2299 REMARK 3 4 2.4500 - 2.2300 0.86 3515 172 0.1855 0.2217 REMARK 3 5 2.2300 - 2.0900 1.00 3564 196 0.1970 0.2197 REMARK 3 6 2.0600 - 1.9500 0.97 3710 190 0.2032 0.2144 REMARK 3 7 1.9500 - 1.8500 0.76 3104 138 0.2201 0.2445 REMARK 3 8 1.8500 - 1.7700 0.80 3235 185 0.2249 0.2485 REMARK 3 9 1.7700 - 1.7000 0.72 2868 155 0.2157 0.2517 REMARK 3 10 1.7000 - 1.6400 0.62 2558 95 0.2224 0.2326 REMARK 3 11 1.6400 - 1.5900 0.53 2122 110 0.2340 0.2572 REMARK 3 12 1.5900 - 1.5400 0.43 1726 80 0.2470 0.3554 REMARK 3 13 1.5400 - 1.5000 0.28 1135 57 0.2694 0.2705 REMARK 3 14 1.5000 - 1.4700 0.13 537 28 0.2748 0.2915 REMARK 3 15 1.4700 - 1.4300 0.06 223 18 0.3398 0.3113 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.878 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2890 REMARK 3 ANGLE : 1.157 3988 REMARK 3 CHIRALITY : 0.080 428 REMARK 3 PLANARITY : 0.010 441 REMARK 3 DIHEDRAL : 18.289 1128 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5123 44.7296 -13.3834 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.1735 REMARK 3 T33: 0.2790 T12: 0.0476 REMARK 3 T13: -0.0709 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.9945 L22: 1.6873 REMARK 3 L33: 5.7914 L12: -0.3446 REMARK 3 L13: 2.1182 L23: -0.3286 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: -0.0506 S13: 0.1655 REMARK 3 S21: -0.4109 S22: -0.0305 S23: 0.3500 REMARK 3 S31: -0.2673 S32: -0.6005 S33: -0.0309 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7465 24.8413 10.1665 REMARK 3 T TENSOR REMARK 3 T11: 0.1439 T22: 0.1889 REMARK 3 T33: 0.1271 T12: -0.0237 REMARK 3 T13: 0.0083 T23: 0.0683 REMARK 3 L TENSOR REMARK 3 L11: 5.3685 L22: 5.0427 REMARK 3 L33: 2.5441 L12: -2.9230 REMARK 3 L13: 1.9934 L23: -1.3729 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: -0.3220 S13: -0.3268 REMARK 3 S21: 0.4081 S22: -0.1220 S23: 0.1671 REMARK 3 S31: 0.1679 S32: 0.0839 S33: 0.0921 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 135 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5366 24.8819 2.2652 REMARK 3 T TENSOR REMARK 3 T11: 0.0823 T22: 0.0925 REMARK 3 T33: 0.1522 T12: -0.0047 REMARK 3 T13: -0.0155 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.6497 L22: 1.5676 REMARK 3 L33: 1.5687 L12: -0.4109 REMARK 3 L13: 0.3044 L23: 0.2697 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: -0.0895 S13: -0.2051 REMARK 3 S21: 0.0551 S22: -0.0185 S23: -0.1076 REMARK 3 S31: 0.1047 S32: 0.0273 S33: -0.0163 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 136 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7035 28.5871 -17.6324 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1783 REMARK 3 T33: 0.1897 T12: -0.0397 REMARK 3 T13: 0.0011 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 5.8895 L22: 5.0092 REMARK 3 L33: 7.7924 L12: 1.0528 REMARK 3 L13: 4.4096 L23: 1.1381 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: -0.4516 S13: -0.1405 REMARK 3 S21: 0.1373 S22: -0.1871 S23: 0.4647 REMARK 3 S31: 0.4063 S32: -0.6997 S33: 0.1376 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5916 23.0674 -26.9032 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.2123 REMARK 3 T33: 0.2401 T12: -0.0221 REMARK 3 T13: -0.0748 T23: -0.0714 REMARK 3 L TENSOR REMARK 3 L11: 5.4567 L22: 3.4784 REMARK 3 L33: 3.0941 L12: 0.5440 REMARK 3 L13: 0.9230 L23: 0.8298 REMARK 3 S TENSOR REMARK 3 S11: 0.2157 S12: 0.4005 S13: -1.0717 REMARK 3 S21: -0.1718 S22: -0.0017 S23: 0.1795 REMARK 3 S31: 0.4423 S32: 0.1609 S33: -0.0756 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.3997 26.4299 -31.7699 REMARK 3 T TENSOR REMARK 3 T11: 0.2990 T22: 0.1881 REMARK 3 T33: 0.1859 T12: -0.0099 REMARK 3 T13: -0.0280 T23: -0.0671 REMARK 3 L TENSOR REMARK 3 L11: 2.5575 L22: 3.5358 REMARK 3 L33: 5.1903 L12: -0.4496 REMARK 3 L13: -0.5023 L23: 1.6554 REMARK 3 S TENSOR REMARK 3 S11: 0.0382 S12: 0.5144 S13: -0.3931 REMARK 3 S21: -0.7654 S22: 0.1056 S23: -0.1261 REMARK 3 S31: 0.1027 S32: 0.2360 S33: -0.1321 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.2212 39.3754 -28.4527 REMARK 3 T TENSOR REMARK 3 T11: 0.6682 T22: 0.2917 REMARK 3 T33: 0.3010 T12: -0.0218 REMARK 3 T13: 0.1121 T23: -0.0614 REMARK 3 L TENSOR REMARK 3 L11: 1.5176 L22: 2.8615 REMARK 3 L33: 5.6333 L12: 1.9891 REMARK 3 L13: 2.8387 L23: 3.9777 REMARK 3 S TENSOR REMARK 3 S11: -0.5616 S12: 0.4753 S13: -0.3112 REMARK 3 S21: -1.3363 S22: 0.3211 S23: -0.4639 REMARK 3 S31: -0.1704 S32: 0.8987 S33: -0.3595 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 231 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2565 40.6622 -28.8554 REMARK 3 T TENSOR REMARK 3 T11: 0.5822 T22: 0.2057 REMARK 3 T33: 0.1548 T12: -0.0774 REMARK 3 T13: 0.0289 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.8543 L22: 1.1384 REMARK 3 L33: 2.6590 L12: -0.4576 REMARK 3 L13: 0.1694 L23: 0.5990 REMARK 3 S TENSOR REMARK 3 S11: -0.1056 S12: 0.4963 S13: -0.0867 REMARK 3 S21: -1.1782 S22: 0.1641 S23: -0.2250 REMARK 3 S31: -0.3111 S32: -0.1682 S33: -0.1448 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5646 37.4715 -29.3008 REMARK 3 T TENSOR REMARK 3 T11: 0.4946 T22: 0.2992 REMARK 3 T33: 0.3494 T12: 0.0346 REMARK 3 T13: -0.2468 T23: -0.0769 REMARK 3 L TENSOR REMARK 3 L11: 4.4649 L22: 2.0630 REMARK 3 L33: 0.9055 L12: 0.5885 REMARK 3 L13: -0.1955 L23: 0.3896 REMARK 3 S TENSOR REMARK 3 S11: 0.0511 S12: 0.5884 S13: -0.2384 REMARK 3 S21: -1.3084 S22: -0.1494 S23: 0.8169 REMARK 3 S31: -0.3997 S32: -0.5500 S33: 0.0471 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4996 26.0929 -11.4566 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.0955 REMARK 3 T33: 0.2019 T12: 0.0119 REMARK 3 T13: -0.0214 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.7712 L22: 3.3837 REMARK 3 L33: 1.5716 L12: -1.1971 REMARK 3 L13: 0.3701 L23: 0.6686 REMARK 3 S TENSOR REMARK 3 S11: 0.2015 S12: 0.0778 S13: -0.3947 REMARK 3 S21: -0.1128 S22: -0.1250 S23: 0.0511 REMARK 3 S31: 0.3487 S32: 0.0066 S33: 0.0381 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 16 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1331 10.6090 -15.9357 REMARK 3 T TENSOR REMARK 3 T11: 0.6894 T22: 0.2231 REMARK 3 T33: 0.7661 T12: 0.1937 REMARK 3 T13: -0.0896 T23: -0.1398 REMARK 3 L TENSOR REMARK 3 L11: 6.9217 L22: 7.6439 REMARK 3 L33: 2.3405 L12: -6.8123 REMARK 3 L13: -0.2500 L23: 0.0093 REMARK 3 S TENSOR REMARK 3 S11: 0.5368 S12: 0.9808 S13: -0.9049 REMARK 3 S21: -0.5608 S22: -0.8967 S23: 0.2302 REMARK 3 S31: 1.6801 S32: 0.0475 S33: 0.2277 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9ST7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-25. REMARK 100 THE DEPOSITION ID IS D_1292151122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 32.940 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.6 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.10750 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 3.65500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM IMIDAZOLE 400MM CALCIUM ACETATE REMARK 280 16% PEG 8000 (W:V) 0.1M BARIUM CHLORIDE DIHYDRATE, PH 8.5, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.36900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.85950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.36900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.73800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 558 O HOH A 648 1.72 REMARK 500 O HOH A 627 O HOH A 637 1.84 REMARK 500 OG SER A 50 O HOH A 401 2.00 REMARK 500 N7 DA B 3 O HOH B 101 2.05 REMARK 500 OE2 GLU A 212 O HOH A 402 2.07 REMARK 500 NZ LYS A 61 O HOH A 403 2.08 REMARK 500 O HOH A 497 O HOH A 683 2.08 REMARK 500 O HOH A 635 O HOH A 648 2.08 REMARK 500 O6 DG C 18 O HOH C 101 2.09 REMARK 500 O HOH A 401 O HOH A 613 2.10 REMARK 500 NZ LYS A 41 O HOH A 404 2.11 REMARK 500 O HOH A 563 O HOH A 596 2.12 REMARK 500 OE1 GLU A 150 O HOH A 405 2.16 REMARK 500 OE1 GLU A 57 O HOH A 406 2.17 REMARK 500 OD2 ASP A 29 O HOH A 407 2.18 REMARK 500 O HOH A 466 O HOH A 658 2.19 REMARK 500 O HOH A 639 O HOH A 645 2.19 REMARK 500 O HOH A 437 O HOH A 512 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 646 O HOH A 673 4455 1.96 REMARK 500 O HOH A 402 O HOH B 112 2565 2.13 REMARK 500 O HOH A 553 O HOH A 633 2565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B 1 P DC B 1 OP3 -0.121 REMARK 500 DA C 16 P DA C 16 OP3 -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 237 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 DC B 4 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT B 10 O5' - P - OP2 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 216 -3.43 75.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 213 ASP A 214 -30.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 693 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD1 REMARK 620 2 ASP A 184 OD1 93.7 REMARK 620 3 HOH A 443 O 99.5 166.8 REMARK 620 4 HOH A 548 O 90.2 100.2 79.1 REMARK 620 5 HOH A 584 O 175.5 84.0 82.8 86.4 REMARK 620 6 DG B 9 OP1 88.3 85.4 95.7 174.2 95.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 184 OD1 REMARK 620 2 ASP A 184 OD2 44.5 REMARK 620 3 HOH A 444 O 102.2 57.7 REMARK 620 4 HOH A 478 O 84.8 66.9 66.3 REMARK 620 5 HOH A 531 O 60.2 75.7 102.8 141.0 REMARK 620 6 HOH A 661 O 153.8 109.3 51.7 81.6 122.4 REMARK 620 7 DG B 9 OP1 69.1 103.8 141.7 75.7 104.0 127.8 REMARK 620 N 1 2 3 4 5 6 DBREF 9ST7 A 1 288 UNP E5Q8U2 E5Q8U2_GEOSE 1 288 DBREF 9ST7 B 1 15 PDB 9ST7 9ST7 1 15 DBREF 9ST7 C 16 21 PDB 9ST7 9ST7 16 21 SEQRES 1 A 288 MET ILE LYS ASN PHE ARG ASP TYR GLN ARG VAL ALA ALA SEQRES 2 A 288 LYS TYR ILE THR PHE ILE GLU SER GLU PHE TYR PRO ASP SEQRES 3 A 288 TYR LEU ASP ASN ALA ARG PHE LEU TYR GLY GLU VAL LEU SEQRES 4 A 288 ASN LYS PHE TYR GLU LEU VAL ASN SER SER SER SER SER SEQRES 5 A 288 ILE GLU LEU LEU GLU ASN ILE SER LYS THR LYS ASP PRO SEQRES 6 A 288 VAL ARG THR GLN LEU LEU ARG ILE PHE ARG LYS TYR VAL SEQRES 7 A 288 SER PRO ASP THR SER VAL GLU MET LEU LYS ARG LYS GLN SEQRES 8 A 288 ARG ILE PRO ASP ILE ILE LYS GLU PHE GLY THR ARG PHE SEQRES 9 A 288 ARG ASP ILE LYS ILE VAL ARG GLN LYS ILE ALA THR ARG SEQRES 10 A 288 ASN HIS PRO ASP GLU THR ILE MET ALA LEU LEU TYR GLU SEQRES 11 A 288 TYR LYS ASP ARG GLY LYS LYS GLY TYR GLU LEU THR ASP SEQRES 12 A 288 ALA PHE PHE THR TRP PHE GLU GLN LYS PHE PRO ASN TYR SEQRES 13 A 288 GLU ILE ILE GLY PRO ARG GLY ALA GLY LYS ASP ILE LEU SEQRES 14 A 288 LEU ASN GLU VAL LEU PRO GLY PHE PRO SER LYS ILE PRO SEQRES 15 A 288 ALA ASP PHE LEU ILE TYR ARG ARG SER ASP LYS THR PRO SEQRES 16 A 288 ILE VAL VAL GLY PHE ALA ARG TYR ASP SER ASP ARG GLY SEQRES 17 A 288 GLY ALA GLN GLU ASP ASP ARG THR GLY GLY ASN ARG ASP SEQRES 18 A 288 LYS ILE THR GLU ILE LYS LYS TYR ALA ALA GLU HIS ASN SEQRES 19 A 288 ILE PRO LEU LYS ILE LEU PHE LEU ASN ASP GLY PRO GLY SEQRES 20 A 288 LEU LEU LEU GLY SER MET TRP ASN ASP TYR SER ALA LEU SEQRES 21 A 288 GLU ASP TYR GLY GLU GLY CYS VAL MET VAL CYS THR LEU SEQRES 22 A 288 LYS MET LEU GLU GLU ARG PHE THR ILE ASP TRP LEU GLU SEQRES 23 A 288 ASN LEU SEQRES 1 B 15 DC DT DA DC DA DT DT DG DG DT DT DA DC SEQRES 2 B 15 DC DT SEQRES 1 C 6 DA DT DG DT DA DG HET CA A 301 1 HET CA A 302 1 HETNAM CA CALCIUM ION FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *340(H2 O) HELIX 1 AA1 ASN A 4 ILE A 16 5 13 HELIX 2 AA2 TYR A 27 SER A 49 1 23 HELIX 3 AA3 SER A 51 THR A 62 1 12 HELIX 4 AA4 PRO A 65 SER A 79 1 15 HELIX 5 AA5 SER A 83 LYS A 88 1 6 HELIX 6 AA6 ARG A 89 GLN A 91 5 3 HELIX 7 AA7 ARG A 92 GLY A 101 1 10 HELIX 8 AA8 THR A 102 PHE A 104 5 3 HELIX 9 AA9 ASP A 106 ARG A 117 1 12 HELIX 10 AB1 ASP A 121 GLU A 130 1 10 HELIX 11 AB2 GLY A 135 PHE A 153 1 19 HELIX 12 AB3 LEU A 170 LEU A 174 1 5 HELIX 13 AB4 GLY A 209 ASP A 213 5 5 HELIX 14 AB5 ASP A 214 ASN A 219 1 6 HELIX 15 AB6 ASN A 219 HIS A 233 1 15 HELIX 16 AB7 GLY A 245 LEU A 250 5 6 HELIX 17 AB8 SER A 252 GLU A 265 1 14 HELIX 18 AB9 THR A 272 LYS A 274 5 3 HELIX 19 AC1 MET A 275 PHE A 280 1 6 HELIX 20 AC2 THR A 281 ASN A 287 1 7 SHEET 1 AA1 5 TYR A 156 ILE A 159 0 SHEET 2 AA1 5 PHE A 185 ARG A 189 -1 O TYR A 188 N GLU A 157 SHEET 3 AA1 5 PRO A 195 TYR A 203 -1 O ILE A 196 N ILE A 187 SHEET 4 AA1 5 LYS A 238 ASP A 244 1 O LEU A 242 N PHE A 200 SHEET 5 AA1 5 VAL A 268 CYS A 271 1 O MET A 269 N PHE A 241 SHEET 1 AA2 2 ILE A 168 LEU A 169 0 SHEET 2 AA2 2 PRO A 182 ALA A 183 -1 O ALA A 183 N ILE A 168 LINK OD1 ASP A 167 CA CA A 301 1555 1555 2.35 LINK OD1 ASP A 184 CA CA A 301 1555 1555 2.31 LINK OD1 ASP A 184 CA CA A 302 1555 1555 2.72 LINK OD2 ASP A 184 CA CA A 302 1555 1555 3.02 LINK CA CA A 301 O HOH A 443 1555 1555 2.45 LINK CA CA A 301 O HOH A 548 1555 1555 2.43 LINK CA CA A 301 O HOH A 584 1555 1555 2.29 LINK CA CA A 301 OP1 DG B 9 1555 1555 2.29 LINK CA CA A 302 O HOH A 444 1555 1555 2.50 LINK CA CA A 302 O HOH A 478 1555 1555 2.19 LINK CA CA A 302 O HOH A 531 1555 1555 2.96 LINK CA CA A 302 O HOH A 661 1555 1555 2.60 LINK CA CA A 302 OP1 DG B 9 1555 1555 2.78 CISPEP 1 TYR A 24 PRO A 25 0 3.70 CISPEP 2 ASP A 64 PRO A 65 0 8.21 CISPEP 3 HIS A 119 PRO A 120 0 -3.71 CRYST1 69.719 74.738 66.450 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015049 0.00000 CONECT 1393 2792 CONECT 1521 2792 2793 CONECT 1522 2793 CONECT 2523 2792 2793 CONECT 2792 1393 1521 2523 2836 CONECT 2792 2941 2977 CONECT 2793 1521 1522 2523 2837 CONECT 2793 2871 2924 3054 CONECT 2836 2792 CONECT 2837 2793 CONECT 2871 2793 CONECT 2924 2793 CONECT 2941 2792 CONECT 2977 2792 CONECT 3054 2793 MASTER 543 0 2 20 7 0 0 6 3130 3 15 26 END