HEADER TRANSPORT PROTEIN 07-OCT-25 9SWV TITLE BASIC MEMBRANE PROTEIN D IN COMPLEX WITH CYTIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC MEMBRANE PROTEIN D; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROBABLE SUBSTRATE-BINDING PROTEIN BMPD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: RECOMBINANT PROTEIN; VECTOR PET30A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIELLA BURGDORFERI JD1; SOURCE 3 ORGANISM_TAXID: 521008; SOURCE 4 GENE: BMPD, BB_0385; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS SUBSTRATE BINDING, NUCLEOSIDES, ABC TRANSPORTER SYSTEM, LYME KEYWDS 2 BORRELIOSIS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.T.AIRENNE,J.BRUNELL,M.HUHTALA,T.A.SALMINEN REVDAT 1 21-OCT-26 9SWV 0 JRNL AUTH T.T.AIRENNE,J.BRUNELL,M.HUHTALA,T.A.SALMINEN JRNL TITL BASIC MEMBRANE PROTEIN D IN COMPLEX WITH CYTIDINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 161447 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.013 REMARK 3 FREE R VALUE TEST SET COUNT : 8094 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9967 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.25 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 525 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.38800 REMARK 3 B22 (A**2) : -0.31600 REMARK 3 B33 (A**2) : -1.85900 REMARK 3 B12 (A**2) : 0.95300 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.03100 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.038 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.030 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.973 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5198 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5131 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7077 ; 1.715 ; 1.796 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11815 ; 0.631 ; 1.750 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 714 ; 5.913 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 17 ; 6.618 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 956 ;12.434 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 806 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6138 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1180 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 972 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 76 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2572 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 367 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2609 ; 5.668 ; 1.789 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2606 ; 5.620 ; 1.785 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3281 ; 8.222 ; 3.221 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3282 ; 8.226 ; 3.222 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2589 ; 7.912 ; 2.195 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2584 ; 7.879 ; 2.187 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3749 ;11.529 ; 3.867 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3741 ;11.465 ; 3.854 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 10329 ; 3.994 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9SWV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1292151292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873130 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION JUN 30, 2023 REMARK 200 BUILT=20230630 REMARK 200 DATA SCALING SOFTWARE : XSCALE VERSION JUN 30, 2023 REMARK 200 BUILT=20230630, AIMLESS 0.7.15 ; REMARK 200 NO SCALING, ONLY MERGE. REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 161460 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 40.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 40.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.08000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 15.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (~20 MG/ML): 50 MM REMARK 280 TRIS PH 8.0; 1 MG/ML HYGROMYCIN A WELL SOLUTION: 0.2 M CACL2, REMARK 280 0.1 M NAACETATE PH 5.0, 20 % PEG6000 SEED STOCK FROM AN EARLIER REMARK 280 CRYSTALLIZATION TRIAL (MAY HAVE CONTAINED VERY LOW LEVELS OF REMARK 280 CYTIDINE): 0.2 M CACL2, 0.1M TRIS PH 8.0, 22.5 % W/V PEG6000 REMARK 280 SITTING DROPS: 90 NL OF PROTEIN SOLUTION, 90 NL OF WELL SOLUTION REMARK 280 AND 30 NL OF SEED STOCK. CRYO SOLUTION: 50% MPD WERE ADDED TO REMARK 280 THE DROP TO A FINAL CONCENTRATION OF 16% (V/V)., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 SER A -27 REMARK 465 SER A -26 REMARK 465 GLY A -25 REMARK 465 LEU A -24 REMARK 465 VAL A -23 REMARK 465 PRO A -22 REMARK 465 ARG A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 GLY A -18 REMARK 465 MET A -17 REMARK 465 LYS A -16 REMARK 465 GLU A -15 REMARK 465 THR A -14 REMARK 465 ALA A -13 REMARK 465 ALA A -12 REMARK 465 ALA A -11 REMARK 465 LYS A -10 REMARK 465 PHE A -9 REMARK 465 GLU A -8 REMARK 465 ARG A -7 REMARK 465 GLN A -6 REMARK 465 HIS A -5 REMARK 465 MET A -4 REMARK 465 ASP A -3 REMARK 465 SER A -2 REMARK 465 PRO A -1 REMARK 465 ASP A 0 REMARK 465 LEU A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 ASP A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 324 REMARK 465 ASN A 325 REMARK 465 MET B -34 REMARK 465 HIS B -33 REMARK 465 HIS B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 SER B -27 REMARK 465 SER B -26 REMARK 465 GLY B -25 REMARK 465 LEU B -24 REMARK 465 VAL B -23 REMARK 465 PRO B -22 REMARK 465 ARG B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 GLY B -18 REMARK 465 MET B -17 REMARK 465 LYS B -16 REMARK 465 GLU B -15 REMARK 465 THR B -14 REMARK 465 ALA B -13 REMARK 465 ALA B -12 REMARK 465 ALA B -11 REMARK 465 LYS B -10 REMARK 465 PHE B -9 REMARK 465 GLU B -8 REMARK 465 ARG B -7 REMARK 465 GLN B -6 REMARK 465 HIS B -5 REMARK 465 MET B -4 REMARK 465 ASP B -3 REMARK 465 SER B -2 REMARK 465 PRO B -1 REMARK 465 ASP B 0 REMARK 465 LEU B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 ASP B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 GLU B 10 REMARK 465 GLU B 324 REMARK 465 ASN B 325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 175 H GLY A 177 1.25 REMARK 500 HG1 THR B 175 H GLY B 177 1.26 REMARK 500 HD21 ASN B 165 O HOH B 502 1.57 REMARK 500 HE1 MET B 152 O HOH B 726 1.58 REMARK 500 HD22 ASN B 234 O HOH B 504 1.59 REMARK 500 O HOH B 667 O HOH B 686 2.01 REMARK 500 OE1 GLU B 149 O HOH B 501 2.02 REMARK 500 O HOH A 673 O HOH A 681 2.06 REMARK 500 O HOH B 533 O HOH B 710 2.07 REMARK 500 OE2 GLU A 149 O HOH A 501 2.08 REMARK 500 ND2 ASN B 165 O HOH B 502 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET B 152 CG - SD - CE ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG B 183 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 191 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 102 60.08 -67.65 REMARK 500 GLU A 103 25.05 46.62 REMARK 500 ALA A 200 71.92 -117.87 REMARK 500 ALA A 201 28.49 -152.11 REMARK 500 ASP A 225 -55.61 77.82 REMARK 500 ALA A 232 78.55 -160.00 REMARK 500 SER B 55 18.72 -140.60 REMARK 500 GLU B 98 40.68 70.13 REMARK 500 GLU B 103 4.10 55.62 REMARK 500 ALA B 201 31.78 -153.34 REMARK 500 ASP B 225 -54.56 79.15 REMARK 500 ALA B 232 76.45 -159.35 REMARK 500 TYR B 311 -0.25 -145.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 746 DISTANCE = 6.33 ANGSTROMS DBREF 9SWV A 2 325 UNP P0CL55 BMPD_BORBU 18 341 DBREF 9SWV B 2 325 UNP P0CL55 BMPD_BORBU 18 341 SEQADV 9SWV MET A -34 UNP P0CL55 INITIATING METHIONINE SEQADV 9SWV HIS A -33 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS A -32 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS A -31 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS A -30 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS A -29 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS A -28 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER A -27 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER A -26 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLY A -25 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LEU A -24 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV VAL A -23 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV PRO A -22 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ARG A -21 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLY A -20 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER A -19 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLY A -18 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV MET A -17 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LYS A -16 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLU A -15 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV THR A -14 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ALA A -13 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ALA A -12 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ALA A -11 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LYS A -10 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV PHE A -9 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLU A -8 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ARG A -7 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLN A -6 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS A -5 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV MET A -4 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ASP A -3 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER A -2 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV PRO A -1 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ASP A 0 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LEU A 1 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV MET B -34 UNP P0CL55 INITIATING METHIONINE SEQADV 9SWV HIS B -33 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS B -32 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS B -31 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS B -30 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS B -29 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS B -28 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER B -27 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER B -26 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLY B -25 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LEU B -24 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV VAL B -23 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV PRO B -22 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ARG B -21 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLY B -20 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER B -19 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLY B -18 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV MET B -17 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LYS B -16 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLU B -15 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV THR B -14 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ALA B -13 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ALA B -12 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ALA B -11 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LYS B -10 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV PHE B -9 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLU B -8 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ARG B -7 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV GLN B -6 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV HIS B -5 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV MET B -4 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ASP B -3 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV SER B -2 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV PRO B -1 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV ASP B 0 UNP P0CL55 EXPRESSION TAG SEQADV 9SWV LEU B 1 UNP P0CL55 EXPRESSION TAG SEQRES 1 A 360 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 360 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 360 GLU ARG GLN HIS MET ASP SER PRO ASP LEU SER SER SER SEQRES 4 A 360 ASP ASP GLY LYS SER GLU ALA LYS THR VAL SER LEU ILE SEQRES 5 A 360 VAL ASP GLY ALA PHE ASP ASP LYS GLY PHE ASN GLU SER SEQRES 6 A 360 SER SER LYS ALA ILE ARG LYS LEU LYS ALA ASP LEU ASN SEQRES 7 A 360 ILE ASN ILE ILE GLU LYS ALA SER THR GLY ASN SER TYR SEQRES 8 A 360 LEU GLY ASP ILE ALA ASN LEU GLU ASP GLY ASN SER ASN SEQRES 9 A 360 LEU ILE TRP GLY ILE GLY PHE ARG LEU SER ASP ILE LEU SEQRES 10 A 360 PHE GLN ARG ALA SER GLU ASN VAL SER VAL ASN TYR ALA SEQRES 11 A 360 ILE ILE GLU GLY VAL TYR ASP GLU ILE GLN ILE PRO LYS SEQRES 12 A 360 ASN LEU LEU ASN ILE SER PHE ARG SER GLU GLU VAL ALA SEQRES 13 A 360 PHE LEU ALA GLY TYR PHE ALA SER LYS ALA SER LYS THR SEQRES 14 A 360 GLY LYS ILE GLY PHE VAL GLY GLY VAL ARG GLY LYS VAL SEQRES 15 A 360 LEU GLU SER PHE MET TYR GLY TYR GLU ALA GLY ALA LYS SEQRES 16 A 360 TYR ALA ASN SER ASN ILE LYS VAL VAL SER GLN TYR VAL SEQRES 17 A 360 GLY THR PHE GLY ASP PHE GLY LEU GLY ARG SER THR ALA SEQRES 18 A 360 SER ASN MET TYR ARG ASP GLY VAL ASP ILE ILE PHE ALA SEQRES 19 A 360 ALA ALA GLY LEU SER GLY ILE GLY VAL ILE GLU ALA ALA SEQRES 20 A 360 LYS GLU LEU GLY PRO ASP HIS TYR ILE ILE GLY VAL ASP SEQRES 21 A 360 GLN ASP GLN SER TYR LEU ALA PRO ASN ASN VAL ILE VAL SEQRES 22 A 360 SER ALA VAL LYS LYS VAL ASP SER LEU MET TYR SER LEU SEQRES 23 A 360 THR LYS LYS TYR LEU GLU THR GLY VAL LEU ASP GLY GLY SEQRES 24 A 360 LYS THR MET PHE LEU GLY LEU LYS GLU ASP GLY LEU GLY SEQRES 25 A 360 LEU VAL LEU ASN GLU ASN LEU LYS SER ASN TYR SER GLU SEQRES 26 A 360 ILE TYR ASN LYS SER LEU LYS ILE GLY GLN SER ILE MET SEQRES 27 A 360 ASN GLY ILE ILE LYS VAL PRO TYR ASP LYS VAL SER TYR SEQRES 28 A 360 ASP ASN PHE VAL LEU GLN MET GLU ASN SEQRES 1 B 360 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 B 360 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 B 360 GLU ARG GLN HIS MET ASP SER PRO ASP LEU SER SER SER SEQRES 4 B 360 ASP ASP GLY LYS SER GLU ALA LYS THR VAL SER LEU ILE SEQRES 5 B 360 VAL ASP GLY ALA PHE ASP ASP LYS GLY PHE ASN GLU SER SEQRES 6 B 360 SER SER LYS ALA ILE ARG LYS LEU LYS ALA ASP LEU ASN SEQRES 7 B 360 ILE ASN ILE ILE GLU LYS ALA SER THR GLY ASN SER TYR SEQRES 8 B 360 LEU GLY ASP ILE ALA ASN LEU GLU ASP GLY ASN SER ASN SEQRES 9 B 360 LEU ILE TRP GLY ILE GLY PHE ARG LEU SER ASP ILE LEU SEQRES 10 B 360 PHE GLN ARG ALA SER GLU ASN VAL SER VAL ASN TYR ALA SEQRES 11 B 360 ILE ILE GLU GLY VAL TYR ASP GLU ILE GLN ILE PRO LYS SEQRES 12 B 360 ASN LEU LEU ASN ILE SER PHE ARG SER GLU GLU VAL ALA SEQRES 13 B 360 PHE LEU ALA GLY TYR PHE ALA SER LYS ALA SER LYS THR SEQRES 14 B 360 GLY LYS ILE GLY PHE VAL GLY GLY VAL ARG GLY LYS VAL SEQRES 15 B 360 LEU GLU SER PHE MET TYR GLY TYR GLU ALA GLY ALA LYS SEQRES 16 B 360 TYR ALA ASN SER ASN ILE LYS VAL VAL SER GLN TYR VAL SEQRES 17 B 360 GLY THR PHE GLY ASP PHE GLY LEU GLY ARG SER THR ALA SEQRES 18 B 360 SER ASN MET TYR ARG ASP GLY VAL ASP ILE ILE PHE ALA SEQRES 19 B 360 ALA ALA GLY LEU SER GLY ILE GLY VAL ILE GLU ALA ALA SEQRES 20 B 360 LYS GLU LEU GLY PRO ASP HIS TYR ILE ILE GLY VAL ASP SEQRES 21 B 360 GLN ASP GLN SER TYR LEU ALA PRO ASN ASN VAL ILE VAL SEQRES 22 B 360 SER ALA VAL LYS LYS VAL ASP SER LEU MET TYR SER LEU SEQRES 23 B 360 THR LYS LYS TYR LEU GLU THR GLY VAL LEU ASP GLY GLY SEQRES 24 B 360 LYS THR MET PHE LEU GLY LEU LYS GLU ASP GLY LEU GLY SEQRES 25 B 360 LEU VAL LEU ASN GLU ASN LEU LYS SER ASN TYR SER GLU SEQRES 26 B 360 ILE TYR ASN LYS SER LEU LYS ILE GLY GLN SER ILE MET SEQRES 27 B 360 ASN GLY ILE ILE LYS VAL PRO TYR ASP LYS VAL SER TYR SEQRES 28 B 360 ASP ASN PHE VAL LEU GLN MET GLU ASN HET CTN A 401 30 HET MPD A 402 22 HET CL A 403 1 HET CTN B 401 30 HET MPD B 402 22 HET ACT B 403 7 HET ACT B 404 7 HET ACT B 405 7 HET CL B 406 1 HETNAM CTN 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION HETSYN CTN CYTIDINE FORMUL 3 CTN 2(C9 H13 N3 O5) FORMUL 4 MPD 2(C6 H14 O2) FORMUL 5 CL 2(CL 1-) FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 12 HOH *504(H2 O) HELIX 1 AA1 GLY A 26 ASN A 43 1 18 HELIX 2 AA2 SER A 55 GLY A 66 1 12 HELIX 3 AA3 LEU A 78 ASN A 89 1 12 HELIX 4 AA4 ARG A 116 SER A 132 1 17 HELIX 5 AA5 GLY A 145 ASN A 163 1 19 HELIX 6 AA6 ASP A 178 ASP A 192 1 15 HELIX 7 AA7 ALA A 201 GLY A 216 1 16 HELIX 8 AA8 GLN A 228 ALA A 232 5 5 HELIX 9 AA9 LYS A 243 GLY A 259 1 17 HELIX 10 AB1 LEU A 284 ASN A 304 1 21 HELIX 11 AB2 ASP A 312 MET A 323 1 12 HELIX 12 AB3 GLY B 26 ASN B 43 1 18 HELIX 13 AB4 SER B 55 GLY B 66 1 12 HELIX 14 AB5 LEU B 78 ASN B 89 1 12 HELIX 15 AB6 ARG B 116 SER B 132 1 17 HELIX 16 AB7 GLY B 145 ASN B 163 1 19 HELIX 17 AB8 ASP B 178 ASP B 192 1 15 HELIX 18 AB9 ALA B 201 GLY B 216 1 16 HELIX 19 AC1 GLN B 228 ALA B 232 5 5 HELIX 20 AC2 LYS B 243 GLY B 259 1 17 HELIX 21 AC3 LEU B 284 ASN B 304 1 21 HELIX 22 AC4 ASP B 312 MET B 323 1 12 SHEET 1 AA1 6 ASN A 45 SER A 51 0 SHEET 2 AA1 6 THR A 13 ASP A 19 1 N VAL A 18 O SER A 51 SHEET 3 AA1 6 LEU A 70 ILE A 74 1 O TRP A 72 N SER A 15 SHEET 4 AA1 6 ASN A 93 ILE A 97 1 O ALA A 95 N GLY A 73 SHEET 5 AA1 6 LEU A 110 PHE A 115 1 O LEU A 111 N ILE A 96 SHEET 6 AA1 6 LYS A 265 LEU A 269 1 O MET A 267 N SER A 114 SHEET 1 AA2 6 LYS A 167 TYR A 172 0 SHEET 2 AA2 6 LYS A 136 GLY A 141 1 N ILE A 137 O VAL A 169 SHEET 3 AA2 6 ILE A 196 ALA A 200 1 O ILE A 196 N GLY A 138 SHEET 4 AA2 6 TYR A 220 ASP A 225 1 O ILE A 222 N ILE A 197 SHEET 5 AA2 6 VAL A 236 LYS A 242 1 O ALA A 240 N GLY A 223 SHEET 6 AA2 6 LEU A 276 LEU A 280 -1 O VAL A 279 N SER A 239 SHEET 1 AA3 6 ASN B 45 SER B 51 0 SHEET 2 AA3 6 THR B 13 ASP B 19 1 N VAL B 18 O SER B 51 SHEET 3 AA3 6 LEU B 70 ILE B 74 1 O TRP B 72 N SER B 15 SHEET 4 AA3 6 ASN B 93 ILE B 97 1 O ALA B 95 N GLY B 73 SHEET 5 AA3 6 LEU B 110 PHE B 115 1 O LEU B 111 N ILE B 96 SHEET 6 AA3 6 LYS B 265 LEU B 269 1 O MET B 267 N SER B 114 SHEET 1 AA4 6 LYS B 167 TYR B 172 0 SHEET 2 AA4 6 LYS B 136 GLY B 141 1 N ILE B 137 O VAL B 169 SHEET 3 AA4 6 ILE B 196 ALA B 200 1 O ILE B 196 N GLY B 138 SHEET 4 AA4 6 TYR B 220 ASP B 225 1 O ILE B 222 N ILE B 197 SHEET 5 AA4 6 VAL B 236 LYS B 242 1 O ALA B 240 N GLY B 223 SHEET 6 AA4 6 LEU B 276 LEU B 280 -1 O VAL B 279 N SER B 239 CRYST1 43.390 57.490 67.590 90.96 108.60 102.72 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023047 0.005202 0.008280 0.00000 SCALE2 0.000000 0.017832 0.001686 0.00000 SCALE3 0.000000 0.000000 0.015680 0.00000 CONECT102321023310249 CONECT1023310232102341025010251 CONECT1023410233102351024710252 CONECT102351023410236 CONECT1023610235102371024510253 CONECT10237102361023810242 CONECT10238102371023910254 CONECT10239102381024010255 CONECT10240102391024110244 CONECT102411024010242 CONECT10242102371024110243 CONECT1024310242 CONECT10244102401025610257 CONECT1024510236102461024710258 CONECT102461024510259 CONECT1024710234102451024810260 CONECT102481024710261 CONECT1024910232 CONECT1025010233 CONECT1025110233 CONECT1025210234 CONECT1025310236 CONECT1025410238 CONECT1025510239 CONECT1025610244 CONECT1025710244 CONECT1025810245 CONECT1025910246 CONECT1026010247 CONECT1026110248 CONECT1026210263102701027110272 CONECT1026310262102641026510266 CONECT102641026310273 CONECT1026510263102741027510276 CONECT1026610263102671027710278 CONECT1026710266102681026910279 CONECT102681026710280 CONECT1026910267102811028210283 CONECT1027010262 CONECT1027110262 CONECT1027210262 CONECT1027310264 CONECT1027410265 CONECT1027510265 CONECT1027610265 CONECT1027710266 CONECT1027810266 CONECT1027910267 CONECT1028010268 CONECT1028110269 CONECT1028210269 CONECT1028310269 CONECT102851028610302 CONECT1028610285102871030310304 CONECT1028710286102881030010305 CONECT102881028710289 CONECT1028910288102901029810306 CONECT10290102891029110295 CONECT10291102901029210307 CONECT10292102911029310308 CONECT10293102921029410297 CONECT102941029310295 CONECT10295102901029410296 CONECT1029610295 CONECT10297102931030910310 CONECT1029810289102991030010311 CONECT102991029810312 CONECT1030010287102981030110313 CONECT103011030010314 CONECT1030210285 CONECT1030310286 CONECT1030410286 CONECT1030510287 CONECT1030610289 CONECT1030710291 CONECT1030810292 CONECT1030910297 CONECT1031010297 CONECT1031110298 CONECT1031210299 CONECT1031310300 CONECT1031410301 CONECT1031510316103231032410325 CONECT1031610315103171031810319 CONECT103171031610326 CONECT1031810316103271032810329 CONECT1031910316103201033010331 CONECT1032010319103211032210332 CONECT103211032010333 CONECT1032210320103341033510336 CONECT1032310315 CONECT1032410315 CONECT1032510315 CONECT1032610317 CONECT1032710318 CONECT1032810318 CONECT1032910318 CONECT1033010319 CONECT1033110319 CONECT1033210320 CONECT1033310321 CONECT1033410322 CONECT1033510322 CONECT1033610322 CONECT10337103381033910340 CONECT1033810337 CONECT1033910337 CONECT1034010337103411034210343 CONECT1034110340 CONECT1034210340 CONECT1034310340 CONECT10344103451034610347 CONECT1034510344 CONECT1034610344 CONECT1034710344103481034910350 CONECT1034810347 CONECT1034910347 CONECT1035010347 CONECT10351103521035310354 CONECT1035210351 CONECT1035310351 CONECT1035410351103551035610357 CONECT1035510354 CONECT1035610354 CONECT1035710354 MASTER 417 0 9 22 24 0 0 6 5352 2 125 56 END