HEADER SIGNALING PROTEIN 11-OCT-25 9SYB TITLE DISHEVELLED 2 PDZ DOMAIN IN COMPLEX WITH FRIZZLED 4 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEGMENT POLARITY PROTEIN DISHEVELLED HOMOLOG DVL-2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: DISHEVELLED-2,DSH HOMOLOG 2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DVL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PDZ, WNT, DISHEVELLED, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.RENKO,M.BIENZ,M.V.GAMMONS REVDAT 1 21-OCT-26 9SYB 0 JRNL AUTH M.RENKO,M.V.GAMMONS JRNL TITL DISHEVELLED 2 PDZ DOMAIN IN COMPLEX WITH FRIZZLED 4 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.877 REMARK 3 FREE R VALUE TEST SET COUNT : 1504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.4200 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77900 REMARK 3 B22 (A**2) : -1.98500 REMARK 3 B33 (A**2) : 1.20600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2103 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2106 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2831 ; 1.581 ; 1.779 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4834 ; 0.517 ; 1.752 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 7.698 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 9 ; 5.401 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 372 ;13.534 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2441 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 427 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 364 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 108 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1021 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 68 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1127 ; 2.303 ; 2.646 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1127 ; 2.303 ; 2.645 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1393 ; 3.253 ; 4.735 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1394 ; 3.252 ; 4.734 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 976 ; 2.751 ; 3.005 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 977 ; 2.749 ; 3.005 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1438 ; 4.306 ; 5.366 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1439 ; 4.304 ; 5.365 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 258 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): -5.9138 -24.2083 -8.3999 REMARK 3 T TENSOR REMARK 3 T11: 0.2970 T22: 0.2166 REMARK 3 T33: 0.1920 T12: 0.0240 REMARK 3 T13: -0.0243 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 7.1043 L22: 3.6216 REMARK 3 L33: 4.2670 L12: -0.5134 REMARK 3 L13: -2.6905 L23: -0.0421 REMARK 3 S TENSOR REMARK 3 S11: 0.2309 S12: -0.6741 S13: 0.0240 REMARK 3 S21: 0.1632 S22: -0.1811 S23: -0.1280 REMARK 3 S31: -0.0553 S32: 0.1765 S33: -0.0499 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 269 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -9.1770 -33.0059 -16.0556 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.1297 REMARK 3 T33: 0.1685 T12: 0.0129 REMARK 3 T13: 0.0454 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 4.3193 L22: 3.7042 REMARK 3 L33: 3.7737 L12: 0.1560 REMARK 3 L13: 0.1565 L23: -0.2104 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.0712 S13: -0.0853 REMARK 3 S21: -0.1335 S22: -0.0121 S23: 0.2049 REMARK 3 S31: 0.0353 S32: -0.2251 S33: -0.0044 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 311 A 336 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7349 -24.6848 -22.7147 REMARK 3 T TENSOR REMARK 3 T11: 0.2218 T22: 0.1820 REMARK 3 T33: 0.1949 T12: 0.0091 REMARK 3 T13: -0.0048 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 4.7076 L22: 2.7936 REMARK 3 L33: 2.8721 L12: 0.4224 REMARK 3 L13: 0.7333 L23: 0.9719 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.2153 S13: -0.0235 REMARK 3 S21: -0.1528 S22: 0.0112 S23: 0.0919 REMARK 3 S31: -0.0108 S32: -0.1108 S33: 0.0133 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 337 A 352 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6586 -26.6957 -12.2434 REMARK 3 T TENSOR REMARK 3 T11: 0.2303 T22: 0.2632 REMARK 3 T33: 0.1951 T12: 0.0555 REMARK 3 T13: -0.0283 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 4.0857 L22: 0.8286 REMARK 3 L33: 3.8438 L12: -1.3692 REMARK 3 L13: 0.1316 L23: 0.9225 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: -0.2254 S13: -0.2166 REMARK 3 S21: 0.0386 S22: -0.0493 S23: 0.1050 REMARK 3 S31: 0.2335 S32: -0.1464 S33: 0.0470 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 353 A 359 REMARK 3 ORIGIN FOR THE GROUP (A): -8.1973 -48.4946 -13.0257 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.2136 REMARK 3 T33: 0.1988 T12: 0.0013 REMARK 3 T13: -0.0205 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 8.8164 L22: 16.4955 REMARK 3 L33: 7.9711 L12: -1.1884 REMARK 3 L13: -0.9978 L23: 4.6428 REMARK 3 S TENSOR REMARK 3 S11: -0.1175 S12: -0.8680 S13: 0.4630 REMARK 3 S21: 0.7376 S22: 0.0172 S23: 0.4291 REMARK 3 S31: -0.2690 S32: -0.0322 S33: 0.1002 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -13.7614 -57.3637 -30.1127 REMARK 3 T TENSOR REMARK 3 T11: 0.2627 T22: 0.2774 REMARK 3 T33: 0.2044 T12: -0.0525 REMARK 3 T13: 0.0193 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 6.8018 L22: 3.1682 REMARK 3 L33: 5.6864 L12: -0.7485 REMARK 3 L13: 2.8574 L23: -2.9927 REMARK 3 S TENSOR REMARK 3 S11: 0.2889 S12: 0.2625 S13: -0.4012 REMARK 3 S21: -0.3730 S22: -0.2255 S23: 0.0863 REMARK 3 S31: 0.2956 S32: 0.1663 S33: -0.0633 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -13.2791 -49.6615 -23.6482 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.1869 REMARK 3 T33: 0.1634 T12: -0.0096 REMARK 3 T13: -0.0087 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.8226 L22: 4.6533 REMARK 3 L33: 2.7039 L12: -0.3970 REMARK 3 L13: 1.1303 L23: 0.3681 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.0979 S13: 0.0583 REMARK 3 S21: 0.1920 S22: -0.0158 S23: 0.2885 REMARK 3 S31: 0.0237 S32: -0.2782 S33: 0.0344 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -17.5907 -52.6437 -13.3962 REMARK 3 T TENSOR REMARK 3 T11: 0.2686 T22: 0.2983 REMARK 3 T33: 0.2620 T12: -0.0185 REMARK 3 T13: 0.0052 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 4.5053 L22: 11.3265 REMARK 3 L33: 5.5613 L12: -2.3764 REMARK 3 L13: -2.3215 L23: 3.7650 REMARK 3 S TENSOR REMARK 3 S11: -0.0886 S12: -0.3776 S13: 0.2053 REMARK 3 S21: 0.3366 S22: 0.1213 S23: 0.6280 REMARK 3 S31: -0.4187 S32: -0.6050 S33: -0.0327 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -16.2275 -55.4222 -24.5313 REMARK 3 T TENSOR REMARK 3 T11: 0.1540 T22: 0.2814 REMARK 3 T33: 0.1878 T12: -0.0168 REMARK 3 T13: 0.0463 T23: -0.0511 REMARK 3 L TENSOR REMARK 3 L11: 5.1532 L22: 8.8726 REMARK 3 L33: 4.8566 L12: -3.4013 REMARK 3 L13: 2.3842 L23: -1.8659 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: -0.0773 S13: -0.1645 REMARK 3 S21: -0.0351 S22: -0.0738 S23: -0.1041 REMARK 3 S31: 0.1263 S32: 0.0479 S33: 0.0146 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -4.1649 -35.2102 -25.0712 REMARK 3 T TENSOR REMARK 3 T11: 0.3069 T22: 0.2653 REMARK 3 T33: 0.3075 T12: -0.0003 REMARK 3 T13: -0.0388 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.1750 L22: 18.6444 REMARK 3 L33: 7.7332 L12: -0.7820 REMARK 3 L13: -3.3463 L23: 6.5370 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: 0.6850 S13: -0.5705 REMARK 3 S21: -0.7813 S22: -0.1514 S23: 0.9675 REMARK 3 S31: 0.5113 S32: -0.8778 S33: 0.2130 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -16.8295 -15.1700 -11.8995 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.2464 REMARK 3 T33: 0.1707 T12: 0.0824 REMARK 3 T13: 0.0157 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 13.5538 L22: 21.1991 REMARK 3 L33: 10.6126 L12: 8.8351 REMARK 3 L13: 2.3536 L23: 3.8589 REMARK 3 S TENSOR REMARK 3 S11: -0.4125 S12: 0.2319 S13: 0.1712 REMARK 3 S21: -0.5842 S22: 0.2583 S23: 0.0963 REMARK 3 S31: -0.1447 S32: 0.0584 S33: 0.1543 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -21.0741 -9.6176 -5.0964 REMARK 3 T TENSOR REMARK 3 T11: 0.1737 T22: 0.1850 REMARK 3 T33: 0.1668 T12: 0.0127 REMARK 3 T13: -0.0060 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.5058 L22: 2.3706 REMARK 3 L33: 2.9155 L12: -0.8770 REMARK 3 L13: 0.5281 L23: 0.4902 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0124 S13: -0.0005 REMARK 3 S21: -0.0238 S22: -0.0256 S23: -0.1275 REMARK 3 S31: -0.0547 S32: 0.1247 S33: 0.0270 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -16.7230 -21.9073 2.5966 REMARK 3 T TENSOR REMARK 3 T11: 0.3420 T22: 0.4340 REMARK 3 T33: 0.4270 T12: -0.0326 REMARK 3 T13: -0.0880 T23: 0.1146 REMARK 3 L TENSOR REMARK 3 L11: 6.7021 L22: 10.1653 REMARK 3 L33: 19.9145 L12: -6.5096 REMARK 3 L13: -4.7109 L23: -2.0980 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: -0.3529 S13: -0.6513 REMARK 3 S21: 0.1082 S22: 0.0182 S23: 0.2577 REMARK 3 S31: 0.6768 S32: -0.3153 S33: 0.1349 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -18.0449 -12.9139 6.7296 REMARK 3 T TENSOR REMARK 3 T11: 0.2715 T22: 0.2239 REMARK 3 T33: 0.2325 T12: 0.0280 REMARK 3 T13: -0.0187 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 21.7639 L22: 4.0364 REMARK 3 L33: 8.2862 L12: 6.5102 REMARK 3 L13: -5.6511 L23: -2.1064 REMARK 3 S TENSOR REMARK 3 S11: 0.2278 S12: -0.5058 S13: 0.4171 REMARK 3 S21: 0.4665 S22: -0.1634 S23: -0.0586 REMARK 3 S31: -0.4719 S32: 0.2332 S33: -0.0644 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -22.3272 -10.9072 -5.2622 REMARK 3 T TENSOR REMARK 3 T11: 0.2584 T22: 0.1845 REMARK 3 T33: 0.1595 T12: -0.0078 REMARK 3 T13: 0.0103 T23: 0.0521 REMARK 3 L TENSOR REMARK 3 L11: 3.1293 L22: 2.3777 REMARK 3 L33: 1.4343 L12: -2.2969 REMARK 3 L13: -1.7718 L23: 0.9135 REMARK 3 S TENSOR REMARK 3 S11: 0.0484 S12: 0.1384 S13: -0.0830 REMARK 3 S21: 0.0369 S22: -0.1135 S23: -0.0453 REMARK 3 S31: 0.0015 S32: 0.0758 S33: 0.0651 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9SYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1292151107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30950 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.02600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 39.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MG FORMATE, 15% W/V PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.49350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.03100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 54.32200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.49350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.03100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.32200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.49350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.03100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.32200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.49350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.03100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.32200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 282 REMARK 465 ARG A 283 REMARK 465 SER B 280 REMARK 465 ASN B 281 REMARK 465 GLU B 282 REMARK 465 ARG B 283 REMARK 465 GLY B 284 REMARK 465 ASP B 285 REMARK 465 GLY B 286 REMARK 465 GLU B 320 REMARK 465 GLY B 350 REMARK 465 GLY B 351 REMARK 465 GLY B 352 REMARK 465 LYS B 353 REMARK 465 ASN C 281 REMARK 465 GLU C 282 REMARK 465 ARG C 283 REMARK 465 GLY C 284 REMARK 465 ASP C 285 REMARK 465 GLY C 286 REMARK 465 GLY C 352 REMARK 465 LYS C 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 267 O HOH B 401 2.08 REMARK 500 OD1 ASN B 270 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 294 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 MET C 310 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 315 -117.92 44.19 REMARK 500 ASN B 315 -111.71 52.93 REMARK 500 PRO B 338 160.15 -38.23 REMARK 500 SER B 355 78.56 -108.66 REMARK 500 MET C 266 48.90 -68.11 REMARK 500 ASN C 315 -127.94 46.77 REMARK 500 PHE C 319 61.92 -114.80 REMARK 500 ASN C 321 77.05 51.47 REMARK 500 MET C 322 142.01 -173.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 9SYB A 258 347 UNP O14641 DVL2_HUMAN 264 353 DBREF 9SYB B 258 347 UNP O14641 DVL2_HUMAN 264 353 DBREF 9SYB C 258 347 UNP O14641 DVL2_HUMAN 264 353 SEQADV 9SYB SER A 348 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY A 349 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY A 350 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY A 351 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY A 352 UNP O14641 EXPRESSION TAG SEQADV 9SYB LYS A 353 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY A 354 UNP O14641 EXPRESSION TAG SEQADV 9SYB SER A 355 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLU A 356 UNP O14641 EXPRESSION TAG SEQADV 9SYB THR A 357 UNP O14641 EXPRESSION TAG SEQADV 9SYB VAL A 358 UNP O14641 EXPRESSION TAG SEQADV 9SYB VAL A 359 UNP O14641 EXPRESSION TAG SEQADV 9SYB SER B 348 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY B 349 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY B 350 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY B 351 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY B 352 UNP O14641 EXPRESSION TAG SEQADV 9SYB LYS B 353 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY B 354 UNP O14641 EXPRESSION TAG SEQADV 9SYB SER B 355 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLU B 356 UNP O14641 EXPRESSION TAG SEQADV 9SYB THR B 357 UNP O14641 EXPRESSION TAG SEQADV 9SYB VAL B 358 UNP O14641 EXPRESSION TAG SEQADV 9SYB VAL B 359 UNP O14641 EXPRESSION TAG SEQADV 9SYB SER C 348 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY C 349 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY C 350 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY C 351 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY C 352 UNP O14641 EXPRESSION TAG SEQADV 9SYB LYS C 353 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLY C 354 UNP O14641 EXPRESSION TAG SEQADV 9SYB SER C 355 UNP O14641 EXPRESSION TAG SEQADV 9SYB GLU C 356 UNP O14641 EXPRESSION TAG SEQADV 9SYB THR C 357 UNP O14641 EXPRESSION TAG SEQADV 9SYB VAL C 358 UNP O14641 EXPRESSION TAG SEQADV 9SYB VAL C 359 UNP O14641 EXPRESSION TAG SEQRES 1 A 102 ASN ILE ILE THR VAL THR LEU ASN MET GLU LYS TYR ASN SEQRES 2 A 102 PHE LEU GLY ILE SER ILE VAL GLY GLN SER ASN GLU ARG SEQRES 3 A 102 GLY ASP GLY GLY ILE TYR ILE GLY SER ILE MET LYS GLY SEQRES 4 A 102 GLY ALA VAL ALA ALA ASP GLY ARG ILE GLU PRO GLY ASP SEQRES 5 A 102 MET LEU LEU GLN VAL ASN ASP MET ASN PHE GLU ASN MET SEQRES 6 A 102 SER ASN ASP ASP ALA VAL ARG VAL LEU ARG ASP ILE VAL SEQRES 7 A 102 HIS LYS PRO GLY PRO ILE VAL LEU THR VAL ALA LYS SER SEQRES 8 A 102 GLY GLY GLY GLY LYS GLY SER GLU THR VAL VAL SEQRES 1 B 102 ASN ILE ILE THR VAL THR LEU ASN MET GLU LYS TYR ASN SEQRES 2 B 102 PHE LEU GLY ILE SER ILE VAL GLY GLN SER ASN GLU ARG SEQRES 3 B 102 GLY ASP GLY GLY ILE TYR ILE GLY SER ILE MET LYS GLY SEQRES 4 B 102 GLY ALA VAL ALA ALA ASP GLY ARG ILE GLU PRO GLY ASP SEQRES 5 B 102 MET LEU LEU GLN VAL ASN ASP MET ASN PHE GLU ASN MET SEQRES 6 B 102 SER ASN ASP ASP ALA VAL ARG VAL LEU ARG ASP ILE VAL SEQRES 7 B 102 HIS LYS PRO GLY PRO ILE VAL LEU THR VAL ALA LYS SER SEQRES 8 B 102 GLY GLY GLY GLY LYS GLY SER GLU THR VAL VAL SEQRES 1 C 102 ASN ILE ILE THR VAL THR LEU ASN MET GLU LYS TYR ASN SEQRES 2 C 102 PHE LEU GLY ILE SER ILE VAL GLY GLN SER ASN GLU ARG SEQRES 3 C 102 GLY ASP GLY GLY ILE TYR ILE GLY SER ILE MET LYS GLY SEQRES 4 C 102 GLY ALA VAL ALA ALA ASP GLY ARG ILE GLU PRO GLY ASP SEQRES 5 C 102 MET LEU LEU GLN VAL ASN ASP MET ASN PHE GLU ASN MET SEQRES 6 C 102 SER ASN ASP ASP ALA VAL ARG VAL LEU ARG ASP ILE VAL SEQRES 7 C 102 HIS LYS PRO GLY PRO ILE VAL LEU THR VAL ALA LYS SER SEQRES 8 C 102 GLY GLY GLY GLY LYS GLY SER GLU THR VAL VAL FORMUL 4 HOH *38(H2 O) HELIX 1 AA1 GLY A 297 GLY A 303 1 7 HELIX 2 AA2 SER A 323 LYS A 337 1 15 HELIX 3 AA3 ASN B 265 TYR B 269 5 5 HELIX 4 AA4 GLY B 297 GLY B 303 1 7 HELIX 5 AA5 SER B 323 LYS B 337 1 15 HELIX 6 AA6 GLY C 297 GLY C 303 1 7 HELIX 7 AA7 SER C 323 LYS C 337 1 15 SHEET 1 AA1 4 ILE A 259 LEU A 264 0 SHEET 2 AA1 4 ILE A 341 ALA A 346 -1 O LEU A 343 N VAL A 262 SHEET 3 AA1 4 MET A 310 VAL A 314 -1 N GLN A 313 O THR A 344 SHEET 4 AA1 4 MET A 317 ASN A 318 -1 O MET A 317 N VAL A 314 SHEET 1 AA2 2 ILE A 274 VAL A 277 0 SHEET 2 AA2 2 TYR A 289 ILE A 293 -1 O TYR A 289 N VAL A 277 SHEET 1 AA3 4 ILE B 259 LEU B 264 0 SHEET 2 AA3 4 ILE B 341 ALA B 346 -1 O ILE B 341 N LEU B 264 SHEET 3 AA3 4 MET B 310 VAL B 314 -1 N GLN B 313 O THR B 344 SHEET 4 AA3 4 MET B 317 ASN B 318 -1 O MET B 317 N VAL B 314 SHEET 1 AA4 2 ILE B 274 VAL B 277 0 SHEET 2 AA4 2 TYR B 289 ILE B 293 -1 O TYR B 289 N VAL B 277 SHEET 1 AA5 4 ILE C 259 LEU C 264 0 SHEET 2 AA5 4 ILE C 341 ALA C 346 -1 O LEU C 343 N VAL C 262 SHEET 3 AA5 4 MET C 310 VAL C 314 -1 N MET C 310 O ALA C 346 SHEET 4 AA5 4 MET C 317 ASN C 318 -1 O MET C 317 N VAL C 314 SHEET 1 AA6 2 ILE C 274 VAL C 277 0 SHEET 2 AA6 2 TYR C 289 ILE C 293 -1 O TYR C 289 N VAL C 277 CRYST1 62.987 88.062 108.644 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015876 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011356 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009204 0.00000 MASTER 610 0 0 7 18 0 0 6 2125 3 0 24 END