HEADER ANTITUMOR PROTEIN 29-OCT-25 9T3R TITLE STRUCTURE OF HUMAN HER2 IN COMPLEX WITH EPS232 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: IG-LIKE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: EPS232 FAB HC; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 11 CHAIN: A; COMPND 12 SYNONYM: METASTATIC LYMPH NODE GENE 19 PROTEIN,MLN 19,PROTO-ONCOGENE COMPND 13 NEU,PROTO-ONCOGENE C-ERBB-2,TYROSINE KINASE-TYPE CELL SURFACE COMPND 14 RECEPTOR HER2,P185ERBB2; COMPND 15 EC: 2.7.10.1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 GENE: ERBB2, HER2, MLN19, NEU, NGL; SOURCE 17 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY FAB, COMPLEX, CANCER, EXTRACELLULAR DOMAIN., ANTITUMOR KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.BIRTLEY,R.M.JOHNSON,L.REGAN,K.SONI,V.E.PYE,K.FITZGERALD REVDAT 1 11-MAR-26 9T3R 0 JRNL AUTH J.BIRTLEY,R.M.JOHNSON,L.REGAN,K.SONI,V.E.PYE,K.FITZGERALD JRNL TITL ELUCIDATING THE RELATIONSHIP BETWEEN AFFINITY AND POTENCY IN JRNL TITL 2 THE PERFORMANCE OF IGE AS THERAPEUTIC ANTIBODIES FOR CANCERS JRNL TITL 3 WITH LOW ANTIGEN DENSITIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : WARP, PHENIX, EPU, WARP, RELION, REMARK 3 RELION, RELION, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 179482 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9T3R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1292151707. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN HER2 IN COMPLEX WITH REMARK 245 EPS232 FAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.10 REMARK 245 SAMPLE SUPPORT DETAILS : 25 MAU REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10400 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : TFS FALCON 4I (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4932.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN L 1 REMARK 465 SER L 2 REMARK 465 GLY L 111 REMARK 465 GLN L 112 REMARK 465 PRO L 113 REMARK 465 LYS L 114 REMARK 465 ALA L 115 REMARK 465 ALA L 116 REMARK 465 PRO L 117 REMARK 465 SER L 118 REMARK 465 VAL L 119 REMARK 465 THR L 120 REMARK 465 LEU L 121 REMARK 465 PHE L 122 REMARK 465 PRO L 123 REMARK 465 PRO L 124 REMARK 465 SER L 125 REMARK 465 SER L 126 REMARK 465 GLU L 127 REMARK 465 GLU L 128 REMARK 465 LEU L 129 REMARK 465 GLN L 130 REMARK 465 ALA L 131 REMARK 465 ASN L 132 REMARK 465 LYS L 133 REMARK 465 ALA L 134 REMARK 465 THR L 135 REMARK 465 LEU L 136 REMARK 465 VAL L 137 REMARK 465 CYS L 138 REMARK 465 LEU L 139 REMARK 465 ILE L 140 REMARK 465 SER L 141 REMARK 465 ASP L 142 REMARK 465 PHE L 143 REMARK 465 TYR L 144 REMARK 465 PRO L 145 REMARK 465 GLY L 146 REMARK 465 ALA L 147 REMARK 465 VAL L 148 REMARK 465 THR L 149 REMARK 465 VAL L 150 REMARK 465 ALA L 151 REMARK 465 TRP L 152 REMARK 465 LYS L 153 REMARK 465 ALA L 154 REMARK 465 ASP L 155 REMARK 465 SER L 156 REMARK 465 SER L 157 REMARK 465 PRO L 158 REMARK 465 VAL L 159 REMARK 465 LYS L 160 REMARK 465 ALA L 161 REMARK 465 GLY L 162 REMARK 465 VAL L 163 REMARK 465 GLU L 164 REMARK 465 THR L 165 REMARK 465 THR L 166 REMARK 465 THR L 167 REMARK 465 PRO L 168 REMARK 465 SER L 169 REMARK 465 LYS L 170 REMARK 465 GLN L 171 REMARK 465 SER L 172 REMARK 465 ASN L 173 REMARK 465 ASN L 174 REMARK 465 LYS L 175 REMARK 465 TYR L 176 REMARK 465 ALA L 177 REMARK 465 ALA L 178 REMARK 465 SER L 179 REMARK 465 SER L 180 REMARK 465 TYR L 181 REMARK 465 LEU L 182 REMARK 465 SER L 183 REMARK 465 LEU L 184 REMARK 465 THR L 185 REMARK 465 PRO L 186 REMARK 465 GLU L 187 REMARK 465 GLN L 188 REMARK 465 TRP L 189 REMARK 465 LYS L 190 REMARK 465 SER L 191 REMARK 465 HIS L 192 REMARK 465 ARG L 193 REMARK 465 SER L 194 REMARK 465 TYR L 195 REMARK 465 SER L 196 REMARK 465 CYS L 197 REMARK 465 GLN L 198 REMARK 465 VAL L 199 REMARK 465 THR L 200 REMARK 465 HIS L 201 REMARK 465 GLU L 202 REMARK 465 GLY L 203 REMARK 465 SER L 204 REMARK 465 THR L 205 REMARK 465 VAL L 206 REMARK 465 GLU L 207 REMARK 465 LYS L 208 REMARK 465 THR L 209 REMARK 465 VAL L 210 REMARK 465 ALA L 211 REMARK 465 PRO L 212 REMARK 465 THR L 213 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 465 ARG H 87 REMARK 465 SER H 88 REMARK 465 GLU H 89 REMARK 465 SER H 122 REMARK 465 ALA H 123 REMARK 465 SER H 124 REMARK 465 THR H 125 REMARK 465 LYS H 126 REMARK 465 GLY H 127 REMARK 465 PRO H 128 REMARK 465 SER H 129 REMARK 465 VAL H 130 REMARK 465 PHE H 131 REMARK 465 PRO H 132 REMARK 465 LEU H 133 REMARK 465 ALA H 134 REMARK 465 PRO H 135 REMARK 465 SER H 136 REMARK 465 SER H 137 REMARK 465 LYS H 138 REMARK 465 SER H 139 REMARK 465 THR H 140 REMARK 465 SER H 141 REMARK 465 GLY H 142 REMARK 465 GLY H 143 REMARK 465 THR H 144 REMARK 465 ALA H 145 REMARK 465 ALA H 146 REMARK 465 LEU H 147 REMARK 465 GLY H 148 REMARK 465 CYS H 149 REMARK 465 LEU H 150 REMARK 465 VAL H 151 REMARK 465 LYS H 152 REMARK 465 ASP H 153 REMARK 465 TYR H 154 REMARK 465 PHE H 155 REMARK 465 PRO H 156 REMARK 465 GLU H 157 REMARK 465 PRO H 158 REMARK 465 VAL H 159 REMARK 465 THR H 160 REMARK 465 VAL H 161 REMARK 465 SER H 162 REMARK 465 TRP H 163 REMARK 465 ASN H 164 REMARK 465 SER H 165 REMARK 465 GLY H 166 REMARK 465 ALA H 167 REMARK 465 LEU H 168 REMARK 465 THR H 169 REMARK 465 SER H 170 REMARK 465 GLY H 171 REMARK 465 VAL H 172 REMARK 465 HIS H 173 REMARK 465 THR H 174 REMARK 465 PHE H 175 REMARK 465 PRO H 176 REMARK 465 ALA H 177 REMARK 465 VAL H 178 REMARK 465 LEU H 179 REMARK 465 GLN H 180 REMARK 465 SER H 181 REMARK 465 SER H 182 REMARK 465 GLY H 183 REMARK 465 LEU H 184 REMARK 465 TYR H 185 REMARK 465 SER H 186 REMARK 465 LEU H 187 REMARK 465 SER H 188 REMARK 465 SER H 189 REMARK 465 VAL H 190 REMARK 465 THR H 191 REMARK 465 VAL H 192 REMARK 465 PRO H 193 REMARK 465 SER H 194 REMARK 465 SER H 195 REMARK 465 SER H 196 REMARK 465 LEU H 197 REMARK 465 GLY H 198 REMARK 465 THR H 199 REMARK 465 GLN H 200 REMARK 465 THR H 201 REMARK 465 TYR H 202 REMARK 465 ILE H 203 REMARK 465 CYS H 204 REMARK 465 ASN H 205 REMARK 465 VAL H 206 REMARK 465 ASN H 207 REMARK 465 HIS H 208 REMARK 465 LYS H 209 REMARK 465 PRO H 210 REMARK 465 SER H 211 REMARK 465 ASN H 212 REMARK 465 THR H 213 REMARK 465 LYS H 214 REMARK 465 VAL H 215 REMARK 465 ASP H 216 REMARK 465 LYS H 217 REMARK 465 LYS H 218 REMARK 465 VAL H 219 REMARK 465 GLU H 220 REMARK 465 PRO H 221 REMARK 465 LYS H 222 REMARK 465 SER H 223 REMARK 465 CYS H 224 REMARK 465 ASP H 225 REMARK 465 LYS H 226 REMARK 465 THR H 227 REMARK 465 SER H 228 REMARK 465 GLY H 229 REMARK 465 GLN H 230 REMARK 465 ALA H 231 REMARK 465 GLY H 232 REMARK 465 GLN H 233 REMARK 465 HIS H 234 REMARK 465 HIS H 235 REMARK 465 HIS H 236 REMARK 465 HIS H 237 REMARK 465 HIS H 238 REMARK 465 HIS H 239 REMARK 465 GLY H 240 REMARK 465 ALA H 241 REMARK 465 GLU H 242 REMARK 465 GLN H 243 REMARK 465 LYS H 244 REMARK 465 LEU H 245 REMARK 465 ILE H 246 REMARK 465 SER H 247 REMARK 465 GLU H 248 REMARK 465 GLU H 249 REMARK 465 ASP H 250 REMARK 465 LEU H 251 REMARK 465 GLY H 252 REMARK 465 GLY H 253 REMARK 465 LEU H 254 REMARK 465 ASN H 255 REMARK 465 ASP H 256 REMARK 465 ILE H 257 REMARK 465 PHE H 258 REMARK 465 GLU H 259 REMARK 465 ALA H 260 REMARK 465 GLN H 261 REMARK 465 LYS H 262 REMARK 465 ILE H 263 REMARK 465 GLU H 264 REMARK 465 TRP H 265 REMARK 465 HIS H 266 REMARK 465 GLU H 267 REMARK 465 ASP A 121 REMARK 465 PRO A 122 REMARK 465 LEU A 123 REMARK 465 ASN A 124 REMARK 465 ASN A 125 REMARK 465 THR A 126 REMARK 465 THR A 127 REMARK 465 PRO A 128 REMARK 465 VAL A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 ALA A 132 REMARK 465 SER A 133 REMARK 465 PRO A 134 REMARK 465 CYS A 315 REMARK 465 PRO A 316 REMARK 465 LEU A 317 REMARK 465 HIS A 318 REMARK 465 ASN A 319 REMARK 465 GLN A 320 REMARK 465 GLU A 321 REMARK 465 VAL A 322 REMARK 465 THR A 323 REMARK 465 ALA A 324 REMARK 465 GLU A 325 REMARK 465 ASP A 326 REMARK 465 GLY A 327 REMARK 465 THR A 328 REMARK 465 GLN A 329 REMARK 465 ARG A 330 REMARK 465 CYS A 331 REMARK 465 GLU A 332 REMARK 465 LYS A 333 REMARK 465 CYS A 334 REMARK 465 SER A 335 REMARK 465 LYS A 336 REMARK 465 PRO A 337 REMARK 465 CYS A 338 REMARK 465 ALA A 339 REMARK 465 ARG A 340 REMARK 465 VAL A 341 REMARK 465 GLU A 501 REMARK 465 ASP A 502 REMARK 465 GLU A 503 REMARK 465 CYS A 504 REMARK 465 VAL A 505 REMARK 465 GLY A 506 REMARK 465 GLU A 507 REMARK 465 GLY A 508 REMARK 465 LEU A 509 REMARK 465 ALA A 510 REMARK 465 CYS A 511 REMARK 465 HIS A 512 REMARK 465 GLN A 513 REMARK 465 LEU A 514 REMARK 465 CYS A 515 REMARK 465 ALA A 516 REMARK 465 ARG A 517 REMARK 465 GLY A 518 REMARK 465 HIS A 519 REMARK 465 CYS A 520 REMARK 465 TRP A 521 REMARK 465 GLY A 522 REMARK 465 PRO A 523 REMARK 465 GLY A 524 REMARK 465 PRO A 525 REMARK 465 THR A 526 REMARK 465 GLN A 527 REMARK 465 CYS A 528 REMARK 465 VAL A 529 REMARK 465 ASN A 530 REMARK 465 CYS A 531 REMARK 465 SER A 532 REMARK 465 GLN A 533 REMARK 465 PHE A 534 REMARK 465 LEU A 535 REMARK 465 ARG A 536 REMARK 465 GLY A 537 REMARK 465 GLN A 538 REMARK 465 GLU A 539 REMARK 465 CYS A 540 REMARK 465 VAL A 541 REMARK 465 GLU A 542 REMARK 465 GLU A 543 REMARK 465 CYS A 544 REMARK 465 ARG A 545 REMARK 465 VAL A 546 REMARK 465 LEU A 547 REMARK 465 GLN A 548 REMARK 465 GLY A 549 REMARK 465 LEU A 550 REMARK 465 PRO A 551 REMARK 465 ARG A 552 REMARK 465 GLU A 553 REMARK 465 TYR A 554 REMARK 465 VAL A 555 REMARK 465 ASN A 556 REMARK 465 ALA A 557 REMARK 465 ARG A 558 REMARK 465 HIS A 559 REMARK 465 CYS A 560 REMARK 465 LEU A 561 REMARK 465 PRO A 562 REMARK 465 CYS A 563 REMARK 465 HIS A 564 REMARK 465 PRO A 565 REMARK 465 GLU A 566 REMARK 465 CYS A 567 REMARK 465 GLN A 568 REMARK 465 PRO A 569 REMARK 465 GLN A 570 REMARK 465 ASN A 571 REMARK 465 GLY A 572 REMARK 465 SER A 573 REMARK 465 VAL A 574 REMARK 465 THR A 575 REMARK 465 CYS A 576 REMARK 465 PHE A 577 REMARK 465 GLY A 578 REMARK 465 PRO A 579 REMARK 465 GLU A 580 REMARK 465 ALA A 581 REMARK 465 ASP A 582 REMARK 465 GLN A 583 REMARK 465 CYS A 584 REMARK 465 VAL A 585 REMARK 465 ALA A 586 REMARK 465 CYS A 587 REMARK 465 ALA A 588 REMARK 465 HIS A 589 REMARK 465 TYR A 590 REMARK 465 LYS A 591 REMARK 465 ASP A 592 REMARK 465 PRO A 593 REMARK 465 PRO A 594 REMARK 465 PHE A 595 REMARK 465 CYS A 596 REMARK 465 VAL A 597 REMARK 465 ALA A 598 REMARK 465 ARG A 599 REMARK 465 CYS A 600 REMARK 465 PRO A 601 REMARK 465 SER A 602 REMARK 465 GLY A 603 REMARK 465 VAL A 604 REMARK 465 LYS A 605 REMARK 465 PRO A 606 REMARK 465 ASP A 607 REMARK 465 LEU A 608 REMARK 465 SER A 609 REMARK 465 TYR A 610 REMARK 465 MET A 611 REMARK 465 PRO A 612 REMARK 465 ILE A 613 REMARK 465 TRP A 614 REMARK 465 LYS A 615 REMARK 465 PHE A 616 REMARK 465 PRO A 617 REMARK 465 ASP A 618 REMARK 465 GLU A 619 REMARK 465 GLU A 620 REMARK 465 GLY A 621 REMARK 465 ALA A 622 REMARK 465 CYS A 623 REMARK 465 GLN A 624 REMARK 465 PRO A 625 REMARK 465 CYS A 626 REMARK 465 PRO A 627 REMARK 465 ILE A 628 REMARK 465 ASN A 629 REMARK 465 CYS A 630 REMARK 465 THR A 631 REMARK 465 HIS A 632 REMARK 465 SER A 633 REMARK 465 CYS A 634 REMARK 465 VAL A 635 REMARK 465 ASP A 636 REMARK 465 LEU A 637 REMARK 465 ASP A 638 REMARK 465 ASP A 639 REMARK 465 LYS A 640 REMARK 465 GLY A 641 REMARK 465 CYS A 642 REMARK 465 PRO A 643 REMARK 465 ALA A 644 REMARK 465 GLU A 645 REMARK 465 GLN A 646 REMARK 465 ARG A 647 REMARK 465 ALA A 648 REMARK 465 SER A 649 REMARK 465 PRO A 650 REMARK 465 LEU A 651 REMARK 465 THR A 652 REMARK 465 HIS A 653 REMARK 465 HIS A 654 REMARK 465 HIS A 655 REMARK 465 HIS A 656 REMARK 465 HIS A 657 REMARK 465 HIS A 658 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 216 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 84 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN L 33 52.31 -90.59 REMARK 500 VAL L 53 -57.45 80.54 REMARK 500 ILE H 48 -61.70 -102.13 REMARK 500 LYS A 32 -152.19 60.63 REMARK 500 THR A 146 19.40 -140.68 REMARK 500 ALA A 241 -62.61 -93.85 REMARK 500 THR A 278 17.21 51.55 REMARK 500 PRO A 300 -177.52 -66.77 REMARK 500 ASN A 302 23.66 49.18 REMARK 500 GLU A 348 -131.32 55.15 REMARK 500 ASN A 388 42.41 36.94 REMARK 500 PRO A 420 43.03 -88.63 REMARK 500 ASP A 421 -175.95 -172.99 REMARK 500 ASN A 438 12.31 58.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-55517 RELATED DB: EMDB REMARK 900 STRUCTURE OF HUMAN HER2 IN COMPLEX WITH EPS232 FAB DBREF 9T3R L 1 216 PDB 9T3R 9T3R 1 216 DBREF 9T3R H 1 267 PDB 9T3R 9T3R 1 267 DBREF 9T3R A 23 652 UNP P04626 ERBB2_HUMAN 23 652 SEQADV 9T3R HIS A 653 UNP P04626 EXPRESSION TAG SEQADV 9T3R HIS A 654 UNP P04626 EXPRESSION TAG SEQADV 9T3R HIS A 655 UNP P04626 EXPRESSION TAG SEQADV 9T3R HIS A 656 UNP P04626 EXPRESSION TAG SEQADV 9T3R HIS A 657 UNP P04626 EXPRESSION TAG SEQADV 9T3R HIS A 658 UNP P04626 EXPRESSION TAG SEQRES 1 L 216 GLN SER VAL LEU THR GLN PRO ALA SER VAL SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER ILE THR ILE SER CYS THR GLY THR SER SEQRES 3 L 216 SER ASP VAL GLY SER TYR ASN LEU VAL SER TRP TYR GLN SEQRES 4 L 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR THR SEQRES 5 L 216 VAL SER ASN ARG PRO SER GLY VAL SER ASN ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR ILE SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 216 SER TYR THR SER SER SER SER LEU VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 267 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 267 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 267 TYR THR PHE THR SER TYR ALA MET HIS TRP VAL ARG GLN SEQRES 4 H 267 ALA PRO GLY GLN ARG LEU GLU TRP ILE GLY TRP ILE ASN SEQRES 5 H 267 ALA GLY ASN GLY ASN THR LYS TYR SER GLN LYS PHE GLN SEQRES 6 H 267 GLY ARG VAL THR ILE THR ARG ASP THR SER ALA SER THR SEQRES 7 H 267 ALA TYR MET GLU LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 267 ALA VAL TYR TYR CYS ALA ARG ASP PHE SER SER GLN VAL SEQRES 9 H 267 ALA THR ALA ALA VAL ASP TYR TRP GLY GLN GLY THR LEU SEQRES 10 H 267 VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER VAL SEQRES 11 H 267 PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY GLY SEQRES 12 H 267 THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO SEQRES 13 H 267 GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SEQRES 14 H 267 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER SEQRES 15 H 267 GLY LEU TYR SER LEU SER SER VAL THR VAL PRO SER SER SEQRES 16 H 267 SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS SEQRES 17 H 267 LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO SEQRES 18 H 267 LYS SER CYS ASP LYS THR SER GLY GLN ALA GLY GLN HIS SEQRES 19 H 267 HIS HIS HIS HIS HIS GLY ALA GLU GLN LYS LEU ILE SER SEQRES 20 H 267 GLU GLU ASP LEU GLY GLY LEU ASN ASP ILE PHE GLU ALA SEQRES 21 H 267 GLN LYS ILE GLU TRP HIS GLU SEQRES 1 A 636 THR GLN VAL CYS THR GLY THR ASP MET LYS LEU ARG LEU SEQRES 2 A 636 PRO ALA SER PRO GLU THR HIS LEU ASP MET LEU ARG HIS SEQRES 3 A 636 LEU TYR GLN GLY CYS GLN VAL VAL GLN GLY ASN LEU GLU SEQRES 4 A 636 LEU THR TYR LEU PRO THR ASN ALA SER LEU SER PHE LEU SEQRES 5 A 636 GLN ASP ILE GLN GLU VAL GLN GLY TYR VAL LEU ILE ALA SEQRES 6 A 636 HIS ASN GLN VAL ARG GLN VAL PRO LEU GLN ARG LEU ARG SEQRES 7 A 636 ILE VAL ARG GLY THR GLN LEU PHE GLU ASP ASN TYR ALA SEQRES 8 A 636 LEU ALA VAL LEU ASP ASN GLY ASP PRO LEU ASN ASN THR SEQRES 9 A 636 THR PRO VAL THR GLY ALA SER PRO GLY GLY LEU ARG GLU SEQRES 10 A 636 LEU GLN LEU ARG SER LEU THR GLU ILE LEU LYS GLY GLY SEQRES 11 A 636 VAL LEU ILE GLN ARG ASN PRO GLN LEU CYS TYR GLN ASP SEQRES 12 A 636 THR ILE LEU TRP LYS ASP ILE PHE HIS LYS ASN ASN GLN SEQRES 13 A 636 LEU ALA LEU THR LEU ILE ASP THR ASN ARG SER ARG ALA SEQRES 14 A 636 CYS HIS PRO CYS SER PRO MET CYS LYS GLY SER ARG CYS SEQRES 15 A 636 TRP GLY GLU SER SER GLU ASP CYS GLN SER LEU THR ARG SEQRES 16 A 636 THR VAL CYS ALA GLY GLY CYS ALA ARG CYS LYS GLY PRO SEQRES 17 A 636 LEU PRO THR ASP CYS CYS HIS GLU GLN CYS ALA ALA GLY SEQRES 18 A 636 CYS THR GLY PRO LYS HIS SER ASP CYS LEU ALA CYS LEU SEQRES 19 A 636 HIS PHE ASN HIS SER GLY ILE CYS GLU LEU HIS CYS PRO SEQRES 20 A 636 ALA LEU VAL THR TYR ASN THR ASP THR PHE GLU SER MET SEQRES 21 A 636 PRO ASN PRO GLU GLY ARG TYR THR PHE GLY ALA SER CYS SEQRES 22 A 636 VAL THR ALA CYS PRO TYR ASN TYR LEU SER THR ASP VAL SEQRES 23 A 636 GLY SER CYS THR LEU VAL CYS PRO LEU HIS ASN GLN GLU SEQRES 24 A 636 VAL THR ALA GLU ASP GLY THR GLN ARG CYS GLU LYS CYS SEQRES 25 A 636 SER LYS PRO CYS ALA ARG VAL CYS TYR GLY LEU GLY MET SEQRES 26 A 636 GLU HIS LEU ARG GLU VAL ARG ALA VAL THR SER ALA ASN SEQRES 27 A 636 ILE GLN GLU PHE ALA GLY CYS LYS LYS ILE PHE GLY SER SEQRES 28 A 636 LEU ALA PHE LEU PRO GLU SER PHE ASP GLY ASP PRO ALA SEQRES 29 A 636 SER ASN THR ALA PRO LEU GLN PRO GLU GLN LEU GLN VAL SEQRES 30 A 636 PHE GLU THR LEU GLU GLU ILE THR GLY TYR LEU TYR ILE SEQRES 31 A 636 SER ALA TRP PRO ASP SER LEU PRO ASP LEU SER VAL PHE SEQRES 32 A 636 GLN ASN LEU GLN VAL ILE ARG GLY ARG ILE LEU HIS ASN SEQRES 33 A 636 GLY ALA TYR SER LEU THR LEU GLN GLY LEU GLY ILE SER SEQRES 34 A 636 TRP LEU GLY LEU ARG SER LEU ARG GLU LEU GLY SER GLY SEQRES 35 A 636 LEU ALA LEU ILE HIS HIS ASN THR HIS LEU CYS PHE VAL SEQRES 36 A 636 HIS THR VAL PRO TRP ASP GLN LEU PHE ARG ASN PRO HIS SEQRES 37 A 636 GLN ALA LEU LEU HIS THR ALA ASN ARG PRO GLU ASP GLU SEQRES 38 A 636 CYS VAL GLY GLU GLY LEU ALA CYS HIS GLN LEU CYS ALA SEQRES 39 A 636 ARG GLY HIS CYS TRP GLY PRO GLY PRO THR GLN CYS VAL SEQRES 40 A 636 ASN CYS SER GLN PHE LEU ARG GLY GLN GLU CYS VAL GLU SEQRES 41 A 636 GLU CYS ARG VAL LEU GLN GLY LEU PRO ARG GLU TYR VAL SEQRES 42 A 636 ASN ALA ARG HIS CYS LEU PRO CYS HIS PRO GLU CYS GLN SEQRES 43 A 636 PRO GLN ASN GLY SER VAL THR CYS PHE GLY PRO GLU ALA SEQRES 44 A 636 ASP GLN CYS VAL ALA CYS ALA HIS TYR LYS ASP PRO PRO SEQRES 45 A 636 PHE CYS VAL ALA ARG CYS PRO SER GLY VAL LYS PRO ASP SEQRES 46 A 636 LEU SER TYR MET PRO ILE TRP LYS PHE PRO ASP GLU GLU SEQRES 47 A 636 GLY ALA CYS GLN PRO CYS PRO ILE ASN CYS THR HIS SER SEQRES 48 A 636 CYS VAL ASP LEU ASP ASP LYS GLY CYS PRO ALA GLU GLN SEQRES 49 A 636 ARG ALA SER PRO LEU THR HIS HIS HIS HIS HIS HIS HELIX 1 AA1 SER A 38 THR A 41 5 4 HELIX 2 AA2 HIS A 42 TYR A 50 1 9 HELIX 3 AA3 LEU A 71 ILE A 77 5 7 HELIX 4 AA4 LEU A 168 PHE A 173 1 6 HELIX 5 AA5 SER A 208 CYS A 212 5 5 HELIX 6 AA6 THR A 276 PHE A 279 5 4 HELIX 7 AA7 MET A 347 GLU A 352 5 6 HELIX 8 AA8 ASN A 360 ALA A 365 5 6 HELIX 9 AA9 ASP A 384 ASN A 388 5 5 HELIX 10 AB1 GLN A 396 GLU A 401 5 6 HELIX 11 AB2 LEU A 422 GLN A 426 5 5 HELIX 12 AB3 LEU A 436 GLY A 439 5 4 HELIX 13 AB4 PRO A 481 PHE A 486 1 6 SHEET 1 AA1 5 SER L 9 GLY L 12 0 SHEET 2 AA1 5 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AA1 5 ASP L 87 THR L 94 -1 N TYR L 88 O THR L 105 SHEET 4 AA1 5 VAL L 35 GLN L 40 -1 N SER L 36 O SER L 91 SHEET 5 AA1 5 LYS L 47 ILE L 50 -1 O MET L 49 N TRP L 37 SHEET 1 AA2 4 SER L 9 GLY L 12 0 SHEET 2 AA2 4 THR L 105 VAL L 109 1 O THR L 108 N VAL L 10 SHEET 3 AA2 4 ASP L 87 THR L 94 -1 N TYR L 88 O THR L 105 SHEET 4 AA2 4 SER L 98 PHE L 101 -1 O SER L 98 N THR L 94 SHEET 1 AA3 3 ILE L 18 THR L 23 0 SHEET 2 AA3 3 THR L 72 ILE L 77 -1 O ALA L 73 N CYS L 22 SHEET 3 AA3 3 PHE L 64 SER L 69 -1 N SER L 69 O THR L 72 SHEET 1 AA4 4 GLN H 3 VAL H 5 0 SHEET 2 AA4 4 CYS H 22 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA4 4 THR H 78 ALA H 79 -1 O ALA H 79 N CYS H 22 SHEET 4 AA4 4 ARG H 72 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 AA5 6 GLU H 10 VAL H 11 0 SHEET 2 AA5 6 THR H 116 THR H 119 1 O THR H 119 N GLU H 10 SHEET 3 AA5 6 ALA H 92 ASP H 99 -1 N ALA H 92 O VAL H 118 SHEET 4 AA5 6 MET H 34 GLN H 39 -1 N HIS H 35 O ALA H 97 SHEET 5 AA5 6 LEU H 45 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA5 6 THR H 58 TYR H 60 -1 O LYS H 59 N TRP H 50 SHEET 1 AA6 4 GLU H 10 VAL H 11 0 SHEET 2 AA6 4 THR H 116 THR H 119 1 O THR H 119 N GLU H 10 SHEET 3 AA6 4 ALA H 92 ASP H 99 -1 N ALA H 92 O VAL H 118 SHEET 4 AA6 4 VAL H 109 TYR H 111 -1 O TYR H 111 N ARG H 98 SHEET 1 AA7 2 SER H 17 LYS H 19 0 SHEET 2 AA7 2 GLU H 82 SER H 84 -1 O LEU H 83 N VAL H 18 SHEET 1 AA8 5 VAL A 25 CYS A 26 0 SHEET 2 AA8 5 VAL A 55 VAL A 56 1 O VAL A 55 N CYS A 26 SHEET 3 AA8 5 GLU A 79 VAL A 80 1 O GLU A 79 N VAL A 56 SHEET 4 AA8 5 ILE A 101 VAL A 102 1 O ILE A 101 N VAL A 80 SHEET 5 AA8 5 GLU A 147 ILE A 148 1 O GLU A 147 N VAL A 102 SHEET 1 AA9 5 GLU A 61 THR A 63 0 SHEET 2 AA9 5 VAL A 84 ALA A 87 1 O LEU A 85 N LEU A 62 SHEET 3 AA9 5 TYR A 112 LEU A 117 1 O ALA A 115 N ILE A 86 SHEET 4 AA9 5 GLY A 152 GLN A 156 1 O LEU A 154 N LEU A 114 SHEET 5 AA9 5 LEU A 183 ILE A 184 1 O LEU A 183 N ILE A 155 SHEET 1 AB1 2 PHE A 258 HIS A 260 0 SHEET 2 AB1 2 ILE A 263 GLU A 265 -1 O ILE A 263 N HIS A 260 SHEET 1 AB2 2 VAL A 272 TYR A 274 0 SHEET 2 AB2 2 SER A 281 PRO A 283 -1 O MET A 282 N THR A 273 SHEET 1 AB3 2 TYR A 289 PHE A 291 0 SHEET 2 AB3 2 SER A 294 VAL A 296 -1 O VAL A 296 N TYR A 289 SHEET 1 AB4 4 LYS A 369 ILE A 370 0 SHEET 2 AB4 4 GLU A 405 ILE A 406 1 O GLU A 405 N ILE A 370 SHEET 3 AB4 4 VAL A 430 ILE A 431 1 O VAL A 430 N ILE A 406 SHEET 4 AB4 4 GLU A 460 LEU A 461 1 O GLU A 460 N ILE A 431 SHEET 1 AB5 5 LEU A 374 PHE A 376 0 SHEET 2 AB5 5 LEU A 410 ILE A 412 1 O TYR A 411 N LEU A 374 SHEET 3 AB5 5 TYR A 441 GLN A 446 1 O THR A 444 N ILE A 412 SHEET 4 AB5 5 LEU A 465 HIS A 469 1 O LEU A 465 N SER A 442 SHEET 5 AB5 5 LEU A 493 THR A 496 1 O LEU A 494 N ALA A 466 SSBOND 1 CYS L 22 CYS L 90 1555 1555 2.03 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 3 CYS A 26 CYS A 53 1555 1555 2.03 SSBOND 4 CYS A 162 CYS A 192 1555 1555 2.03 SSBOND 5 CYS A 195 CYS A 204 1555 1555 2.03 SSBOND 6 CYS A 199 CYS A 212 1555 1555 2.03 SSBOND 7 CYS A 220 CYS A 227 1555 1555 2.03 SSBOND 8 CYS A 224 CYS A 235 1555 1555 2.03 SSBOND 9 CYS A 236 CYS A 244 1555 1555 2.03 SSBOND 10 CYS A 240 CYS A 252 1555 1555 2.03 SSBOND 11 CYS A 255 CYS A 264 1555 1555 2.03 SSBOND 12 CYS A 268 CYS A 295 1555 1555 2.03 SSBOND 13 CYS A 299 CYS A 311 1555 1555 2.03 SSBOND 14 CYS A 342 CYS A 367 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 133 644 CONECT 644 133 CONECT 939 1505 CONECT 1505 939 CONECT 1720 1933 CONECT 1933 1720 CONECT 2684 2936 CONECT 2936 2684 CONECT 2959 3022 CONECT 2986 3084 CONECT 3022 2959 CONECT 3084 2986 CONECT 3144 3185 CONECT 3163 3241 CONECT 3185 3144 CONECT 3241 3163 CONECT 3247 3301 CONECT 3281 3358 CONECT 3301 3247 CONECT 3358 3281 CONECT 3377 3448 CONECT 3448 3377 CONECT 3481 3688 CONECT 3688 3481 CONECT 3713 3804 CONECT 3804 3713 CONECT 3832 4023 CONECT 4023 3832 MASTER 621 0 0 13 53 0 0 6 5077 3 28 87 END