HEADER VIRAL PROTEIN 30-OCT-25 9T4P TITLE DENGUE 2 VIRUS NS2B-NS3 PROTEASE FUSION PROTEIN WITH CRYSTAL EPITOPE TITLE 2 MUTATION K174Q COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B,SERINE PROTEASE NS3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT,NON-STRUCTURAL COMPND 5 PROTEIN 2B,FLAVIVIRIN PROTEASE NS3 CATALYTIC SUBUNIT,NON-STRUCTURAL COMPND 6 PROTEIN 3; COMPND 7 EC: 3.4.21.91,3.6.1.15,3.6.4.13; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS TYPE 2; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASE CRYSTAL EPITOPES, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.FAIRHEAD,X.NI,L.KOEKEMOER,E.M.MACLEAN,N.D.WRIGHT,H.BOWESMAN-JONES, AUTHOR 2 F.VON DELFT REVDAT 1 12-NOV-25 9T4P 0 JRNL AUTH M.FAIRHEAD,X.NI,L.KOEKEMOER,E.M.MACLEAN,N.D.WRIGHT, JRNL AUTH 2 H.BOWESMAN-JONES,F.VON DELFT JRNL TITL A FAST, PARALLEL METHOD FOR EFFICIENTLY EXPLORING JRNL TITL 2 CRYSTALLIZATION BEHAVIOUR OF LARGE NUMBERS OF PROTEIN JRNL TITL 3 VARIANTS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15533 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 800 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1062 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.4590 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1483 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24900 REMARK 3 B22 (A**2) : 0.13100 REMARK 3 B33 (A**2) : 0.14900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.188 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.224 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.807 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1510 ; 0.014 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1439 ; 0.006 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2035 ; 2.720 ; 1.814 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3337 ; 1.220 ; 1.772 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ; 9.404 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 6 ;17.341 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;18.798 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 220 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1772 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 314 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 242 ; 0.179 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 34 ; 0.141 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 692 ; 0.156 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 48 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 782 ; 6.575 ; 4.864 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 782 ; 6.560 ; 4.866 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 974 ; 8.596 ; 8.720 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 975 ; 8.593 ; 8.724 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 728 ; 8.489 ; 5.623 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 729 ; 8.484 ; 5.628 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1061 ;11.573 ; 9.976 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1062 ;11.568 ; 9.980 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9T4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-OCT-25. REMARK 100 THE DEPOSITION ID IS D_1292151779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976269 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LFS ECO WELL C09 0.1M HEPES PH 7, 0.2M REMARK 280 LITHIUM CHLORIDE, 20% W/V PEG 6000, 10% V/V ETHYLENE GLYCOL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.74300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.74300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 MET A 2 REMARK 465 GLU A 46 REMARK 465 GLN A 47 REMARK 465 THR A 48 REMARK 465 LEU A 49 REMARK 465 GLY A 50 REMARK 465 GLY A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 53 REMARK 465 SER A 54 REMARK 465 GLY A 55 REMARK 465 GLY A 56 REMARK 465 GLY A 57 REMARK 465 GLY A 58 REMARK 465 ALA A 59 REMARK 465 GLY A 60 REMARK 465 VAL A 61 REMARK 465 LEU A 62 REMARK 465 TRP A 63 REMARK 465 ASP A 64 REMARK 465 VAL A 65 REMARK 465 PRO A 66 REMARK 465 SER A 67 REMARK 465 PRO A 68 REMARK 465 PRO A 69 REMARK 465 PRO A 70 REMARK 465 MET A 71 REMARK 465 GLY A 72 REMARK 465 LYS A 73 REMARK 465 ALA A 74 REMARK 465 GLU A 75 REMARK 465 LEU A 76 REMARK 465 ILE A 230 REMARK 465 GLU A 231 REMARK 465 ASP A 232 REMARK 465 ASN A 233 REMARK 465 PRO A 234 REMARK 465 GLU A 235 REMARK 465 ILE A 236 REMARK 465 GLU A 237 REMARK 465 ASP A 238 REMARK 465 ASP A 239 REMARK 465 ILE A 240 REMARK 465 PHE A 241 REMARK 465 ARG A 242 REMARK 465 LYS A 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 8 HZ3 LYS A 84 1.59 REMARK 500 O ARG A 215 O HOH A 301 2.09 REMARK 500 OE2 GLU A 8 NZ LYS A 84 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 8 CD GLU A 8 OE2 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 8 CG - CD - OE1 ANGL. DEV. = -16.2 DEGREES REMARK 500 GLU A 8 CG - CD - OE2 ANGL. DEV. = 22.6 DEGREES REMARK 500 GLU A 20 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 LYS A 84 CD - CE - NZ ANGL. DEV. = 17.7 DEGREES REMARK 500 SER A 216 N - CA - CB ANGL. DEV. = 11.9 DEGREES REMARK 500 VAL A 220 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 33 -162.76 65.11 REMARK 500 ASP A 35 -78.65 165.84 REMARK 500 GLU A 43 95.28 -56.33 REMARK 500 GLU A 44 97.64 149.63 REMARK 500 SER A 185 39.70 -99.27 REMARK 500 PRO A 190 -58.30 -24.23 REMARK 500 SER A 216 -20.41 108.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 122 0.11 SIDE CHAIN REMARK 500 ARG A 165 0.12 SIDE CHAIN REMARK 500 ARG A 215 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9T4P A 3 49 UNP P14337 POLG_DEN28 1394 1440 DBREF 9T4P A 59 243 UNP P14337 POLG_DEN28 1476 1660 SEQADV 9T4P ALA A 0 UNP P14337 EXPRESSION TAG SEQADV 9T4P SER A 1 UNP P14337 EXPRESSION TAG SEQADV 9T4P MET A 2 UNP P14337 EXPRESSION TAG SEQADV 9T4P GLY A 50 UNP P14337 LINKER SEQADV 9T4P GLY A 51 UNP P14337 LINKER SEQADV 9T4P GLY A 52 UNP P14337 LINKER SEQADV 9T4P GLY A 53 UNP P14337 LINKER SEQADV 9T4P SER A 54 UNP P14337 LINKER SEQADV 9T4P GLY A 55 UNP P14337 LINKER SEQADV 9T4P GLY A 56 UNP P14337 LINKER SEQADV 9T4P GLY A 57 UNP P14337 LINKER SEQADV 9T4P GLY A 58 UNP P14337 LINKER SEQADV 9T4P GLN A 175 UNP P14337 LYS 1592 ENGINEERED MUTATION SEQRES 1 A 244 ALA SER MET ALA ASP LEU GLU LEU GLU ARG ALA ALA ASP SEQRES 2 A 244 VAL LYS TRP GLU ASP GLN ALA GLU ILE SER GLY SER SER SEQRES 3 A 244 PRO ILE LEU SER ILE THR ILE SER GLU ASP GLY SER MET SEQRES 4 A 244 SER ILE LYS ASN GLU GLU GLU GLU GLN THR LEU GLY GLY SEQRES 5 A 244 GLY GLY SER GLY GLY GLY GLY ALA GLY VAL LEU TRP ASP SEQRES 6 A 244 VAL PRO SER PRO PRO PRO MET GLY LYS ALA GLU LEU GLU SEQRES 7 A 244 ASP GLY ALA TYR ARG ILE LYS GLN LYS GLY ILE LEU GLY SEQRES 8 A 244 TYR SER GLN ILE GLY ALA GLY VAL TYR LYS GLU GLY THR SEQRES 9 A 244 PHE HIS THR MET TRP HIS VAL THR ARG GLY ALA VAL LEU SEQRES 10 A 244 MET HIS LYS GLY LYS ARG ILE GLU PRO SER TRP ALA ASP SEQRES 11 A 244 VAL LYS LYS ASP LEU ILE SER TYR GLY GLY GLY TRP LYS SEQRES 12 A 244 LEU GLU GLY GLU TRP LYS GLU GLY GLU GLU VAL GLN VAL SEQRES 13 A 244 LEU ALA LEU GLU PRO GLY LYS ASN PRO ARG ALA VAL GLN SEQRES 14 A 244 THR LYS PRO GLY LEU PHE GLN THR ASN ALA GLY THR ILE SEQRES 15 A 244 GLY ALA VAL SER LEU ASP PHE SER PRO GLY THR SER GLY SEQRES 16 A 244 SER PRO ILE ILE ASP LYS LYS GLY LYS VAL VAL GLY LEU SEQRES 17 A 244 TYR GLY ASN GLY VAL VAL THR ARG SER GLY ALA TYR VAL SEQRES 18 A 244 SER ALA ILE ALA GLN THR GLU LYS SER ILE GLU ASP ASN SEQRES 19 A 244 PRO GLU ILE GLU ASP ASP ILE PHE ARG LYS FORMUL 2 HOH *48(H2 O) HELIX 1 AA1 GLU A 16 GLY A 23 1 8 HELIX 2 AA2 TRP A 108 ARG A 112 1 5 HELIX 3 AA3 SER A 189 SER A 193 5 5 SHEET 1 AA1 8 LYS A 121 ILE A 123 0 SHEET 2 AA1 8 LEU A 116 HIS A 118 -1 N LEU A 116 O ILE A 123 SHEET 3 AA1 8 LEU A 5 ALA A 11 1 N LEU A 5 O MET A 117 SHEET 4 AA1 8 GLY A 79 LYS A 86 -1 O ALA A 80 N ALA A 10 SHEET 5 AA1 8 TYR A 91 LYS A 100 -1 O SER A 92 N GLN A 85 SHEET 6 AA1 8 THR A 103 MET A 107 -1 O THR A 103 N LYS A 100 SHEET 7 AA1 8 LEU A 134 TYR A 137 -1 O TYR A 137 N PHE A 104 SHEET 8 AA1 8 PRO A 125 ASP A 129 -1 N SER A 126 O SER A 136 SHEET 1 AA2 8 SER A 24 PRO A 26 0 SHEET 2 AA2 8 ARG A 165 THR A 169 -1 O ALA A 166 N SER A 25 SHEET 3 AA2 8 VAL A 153 ALA A 157 -1 N VAL A 153 O THR A 169 SHEET 4 AA2 8 PRO A 196 ILE A 198 -1 O ILE A 198 N GLN A 154 SHEET 5 AA2 8 VAL A 204 VAL A 213 -1 O VAL A 205 N ILE A 197 SHEET 6 AA2 8 TYR A 219 ALA A 224 -1 O ALA A 222 N GLY A 209 SHEET 7 AA2 8 GLY A 179 VAL A 184 -1 N VAL A 184 O SER A 221 SHEET 8 AA2 8 GLY A 172 THR A 176 -1 N PHE A 174 O ILE A 181 SHEET 1 AA3 2 ILE A 30 THR A 31 0 SHEET 2 AA3 2 MET A 38 SER A 39 -1 O MET A 38 N THR A 31 CRYST1 123.486 45.200 40.460 90.00 109.11 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008098 0.000000 0.002805 0.00000 SCALE2 0.000000 0.022124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026157 0.00000 TER 2919 SER A 229 HETATM 2920 O HOH A 301 -23.549 -7.086 0.558 1.00 22.35 O HETATM 2921 O HOH A 302 -34.351 25.440 35.384 1.00 55.02 O HETATM 2922 O HOH A 303 -2.941 8.661 8.227 1.00 61.59 O HETATM 2923 O HOH A 304 -15.916 8.132 25.305 1.00 42.19 O HETATM 2924 O HOH A 305 -7.710 11.417 3.746 1.00 73.58 O HETATM 2925 O HOH A 306 -31.331 12.174 18.043 1.00 38.63 O HETATM 2926 O HOH A 307 -10.177 3.086 16.497 1.00 48.55 O HETATM 2927 O HOH A 308 -33.076 19.680 14.950 1.00 44.61 O HETATM 2928 O HOH A 309 -29.809 19.214 20.888 1.00 44.91 O HETATM 2929 O HOH A 310 -35.370 5.011 5.091 1.00 65.33 O HETATM 2930 O HOH A 311 -25.678 -2.006 12.513 1.00 47.20 O HETATM 2931 O HOH A 312 -22.970 16.008 25.591 1.00 49.98 O HETATM 2932 O HOH A 313 -14.306 15.643 18.879 1.00 66.33 O HETATM 2933 O HOH A 314 -12.787 -4.839 10.175 1.00 67.33 O HETATM 2934 O HOH A 315 -30.440 25.884 1.928 1.00 63.71 O HETATM 2935 O HOH A 316 -21.322 -8.468 7.333 1.00 60.26 O HETATM 2936 O HOH A 317 -8.912 6.529 -0.973 1.00 57.70 O HETATM 2937 O HOH A 318 -26.771 21.766 0.415 1.00 63.93 O HETATM 2938 O HOH A 319 -21.731 29.210 0.530 1.00 49.35 O HETATM 2939 O HOH A 320 -10.259 19.103 -1.593 1.00 49.16 O HETATM 2940 O HOH A 321 -28.098 -6.336 7.714 1.00 62.76 O HETATM 2941 O HOH A 322 -29.566 17.822 -4.967 1.00 52.33 O HETATM 2942 O HOH A 323 -41.226 25.696 18.936 1.00 68.76 O HETATM 2943 O HOH A 324 -23.264 18.582 -5.286 1.00 51.29 O HETATM 2944 O HOH A 325 -13.889 12.299 -5.404 1.00 61.44 O HETATM 2945 O HOH A 326 -14.050 0.309 -2.018 1.00 70.26 O HETATM 2946 O HOH A 327 -25.318 -3.119 -4.778 1.00 63.73 O HETATM 2947 O HOH A 328 -16.368 16.606 22.355 1.00 39.52 O HETATM 2948 O HOH A 329 -12.714 21.737 22.580 1.00 53.40 O HETATM 2949 O HOH A 330 -19.138 26.267 20.333 1.00 52.74 O HETATM 2950 O HOH A 331 -23.461 26.311 19.219 1.00 41.94 O HETATM 2951 O HOH A 332 -10.336 5.326 4.555 1.00 73.84 O HETATM 2952 O HOH A 333 -34.905 33.237 6.050 1.00 72.16 O HETATM 2953 O HOH A 334 -12.481 29.679 7.432 1.00 59.87 O HETATM 2954 O HOH A 335 -23.665 21.616 23.845 1.00 55.01 O HETATM 2955 O HOH A 336 -13.789 15.023 -5.199 1.00 49.02 O HETATM 2956 O HOH A 337 -36.303 27.818 14.637 1.00 62.00 O HETATM 2957 O HOH A 338 -11.416 10.606 16.208 1.00 26.30 O HETATM 2958 O HOH A 339 -12.823 -2.460 -1.653 1.00 57.59 O HETATM 2959 O HOH A 340 -6.771 7.209 10.236 1.00 64.49 O HETATM 2960 O HOH A 341 -21.960 7.729 2.450 1.00 55.79 O HETATM 2961 O HOH A 342 -29.370 -6.024 -4.773 1.00 55.00 O HETATM 2962 O HOH A 343 -7.569 19.918 -0.625 1.00 66.03 O HETATM 2963 O HOH A 344 -39.527 27.230 18.408 1.00 70.43 O HETATM 2964 O HOH A 345 -21.744 2.910 -2.175 1.00 65.16 O HETATM 2965 O HOH A 346 -29.737 28.044 15.182 1.00 74.50 O HETATM 2966 O HOH A 347 -32.907 4.024 14.535 1.00 66.42 O HETATM 2967 O HOH A 348 -32.082 28.624 16.559 1.00 69.62 O MASTER 391 0 0 3 18 0 0 6 1531 1 0 19 END