HEADER LYASE 07-NOV-25 9T6A TITLE GLUTAMATE DECARBOXYLASE FROM MYCOBACTERIUM TUBERCULOSIS AT 1.41 A TITLE 2 RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.1.1.15; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GADB, MT3538; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MTB, GLUTAMATE DECARBOXYLASE, PLP, PH 5, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR J.DOSTAL,I.PICHOVA,J.SNASEL REVDAT 1 30-SEP-26 9T6A 0 JRNL AUTH J.SNASEL,J.DOSTAL,M.TUPEC,O.BULVAS,I.PICHOVA JRNL TITL CYCLOSERINE INHIBITS GLUTAMATE DECARBOXYLASE FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J ENZYME INHIB MED CHEM V. 41 07854 2026 JRNL REFN ESSN 1475-6374 JRNL PMID 42765272 JRNL DOI 10.1080/14756366.2026.2707854 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 141374 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.149 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.330 REMARK 3 FREE R VALUE TEST SET COUNT : 1884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3000 - 2.9400 1.00 11835 160 0.1420 0.1487 REMARK 3 2 2.9400 - 2.3300 1.00 11597 156 0.1393 0.1435 REMARK 3 3 2.3300 - 2.0400 1.00 11531 157 0.1213 0.1437 REMARK 3 4 2.0400 - 1.8500 1.00 11526 155 0.1213 0.1444 REMARK 3 5 1.8500 - 1.7200 1.00 11479 155 0.1141 0.1304 REMARK 3 6 1.7200 - 1.6200 1.00 11464 155 0.1154 0.1311 REMARK 3 7 1.6200 - 1.5400 1.00 11442 155 0.1111 0.1349 REMARK 3 8 1.5400 - 1.4700 1.00 11416 154 0.1185 0.1473 REMARK 3 9 1.4700 - 1.4100 1.00 11466 155 0.1381 0.1709 REMARK 3 10 1.4100 - 1.3600 1.00 11409 153 0.1514 0.1812 REMARK 3 11 1.3600 - 1.3200 0.98 11190 152 0.1727 0.1975 REMARK 3 12 1.3200 - 1.2800 0.74 8405 113 0.1787 0.2082 REMARK 3 13 1.2800 - 1.2500 0.41 4730 64 0.1982 0.2442 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.075 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3646 REMARK 3 ANGLE : 1.260 5013 REMARK 3 CHIRALITY : 0.102 556 REMARK 3 PLANARITY : 0.014 664 REMARK 3 DIHEDRAL : 6.418 545 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9T6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292145305. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8-5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : DCD SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 146118 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 36.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02224 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 23.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29180 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.310 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE (PH 5.0), 20% PEG REMARK 280 200, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 60.91700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.17045 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 64.42700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 60.91700 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.17045 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 64.42700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 60.91700 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.17045 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 64.42700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 60.91700 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.17045 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.42700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 60.91700 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.17045 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.42700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 60.91700 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.17045 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 64.42700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.34089 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 128.85400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.34089 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 128.85400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.34089 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 128.85400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.34089 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 128.85400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.34089 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 128.85400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.34089 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 128.85400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -232.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 60.91700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -105.51134 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 121.83400 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 121.83400 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -70.34089 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 64.42700 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -70.34089 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 64.42700 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 60.91700 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 35.17045 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 64.42700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 693 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 734 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 767 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 944 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 976 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 VAL A 447 REMARK 465 LYS A 448 REMARK 465 PRO A 449 REMARK 465 GLY A 450 REMARK 465 GLY A 451 REMARK 465 HIS A 452 REMARK 465 PHE A 453 REMARK 465 ASP A 454 REMARK 465 ALA A 455 REMARK 465 GLN A 456 REMARK 465 HIS A 457 REMARK 465 PHE A 458 REMARK 465 ALA A 459 REMARK 465 HIS A 460 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 20 CG CD NE CZ NH1 NH2 REMARK 470 MET A 21 CG SD CE REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 SER A 149 OG REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ASP A 383 CG OD1 OD2 REMARK 470 ASP A 413 CG OD1 OD2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 338 O HOH A 852 11445 2.02 REMARK 500 O HOH A 702 O HOH A 765 11445 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 75 CG - SD - CE ANGL. DEV. = -11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 262 -147.43 -107.91 REMARK 500 LLP A 277 -113.12 -94.84 REMARK 500 ASP A 310 80.85 -153.19 REMARK 500 PHE A 314 16.83 -143.03 REMARK 500 PHE A 314 21.55 -143.03 REMARK 500 PHE A 318 -96.13 -128.01 REMARK 500 ASP A 383 32.12 -87.76 REMARK 500 ASN A 410 55.03 -105.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 979 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 980 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A 981 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 982 DISTANCE = 8.87 ANGSTROMS DBREF 9T6A A 1 460 UNP O06249 O06249_MYCTO 1 460 SEQADV 9T6A VAL A 1 UNP O06249 MET 1 CONFLICT SEQRES 1 A 460 VAL SER ARG SER HIS PRO SER VAL PRO ALA HIS SER ILE SEQRES 2 A 460 ALA PRO ALA TYR THR GLY ARG MET PHE THR ALA PRO VAL SEQRES 3 A 460 PRO ALA LEU ARG MET PRO ASP GLU SER MET ASP PRO GLU SEQRES 4 A 460 ALA ALA TYR ARG PHE ILE HIS ASP GLU LEU MET LEU ASP SEQRES 5 A 460 GLY SER SER ARG LEU ASN LEU ALA THR PHE VAL THR THR SEQRES 6 A 460 TRP MET ASP PRO GLU ALA GLU LYS LEU MET ALA GLU THR SEQRES 7 A 460 PHE ASP LYS ASN MET ILE ASP LYS ASP GLU TYR PRO ALA SEQRES 8 A 460 THR ALA ALA ILE GLU ALA ARG CYS VAL SER MET VAL ALA SEQRES 9 A 460 ASP LEU PHE HIS ALA GLU GLY LEU ARG ASP HIS ASP PRO SEQRES 10 A 460 THR SER ALA THR GLY VAL SER THR ILE GLY SER SER GLU SEQRES 11 A 460 ALA VAL MET LEU GLY GLY LEU ALA LEU LYS TRP ARG TRP SEQRES 12 A 460 ARG GLN ARG VAL GLY SER TRP LYS GLY ARG MET PRO ASN SEQRES 13 A 460 LEU VAL MET GLY SER ASN VAL GLN VAL VAL TRP GLU LYS SEQRES 14 A 460 PHE CYS ARG TYR PHE ASP VAL GLU PRO ARG TYR LEU PRO SEQRES 15 A 460 MET GLU ARG GLY ARG TYR VAL ILE THR PRO GLU GLN VAL SEQRES 16 A 460 LEU ALA ALA VAL ASP GLU ASN THR ILE GLY VAL VAL ALA SEQRES 17 A 460 ILE LEU GLY THR THR TYR THR GLY GLU LEU GLU PRO ILE SEQRES 18 A 460 ALA GLU ILE CYS ALA ALA LEU ASP LYS LEU ALA ALA GLY SEQRES 19 A 460 GLY GLY VAL ASP VAL PRO VAL HIS VAL ASP ALA ALA SER SEQRES 20 A 460 GLY GLY PHE VAL VAL PRO PHE LEU HIS PRO ASP LEU VAL SEQRES 21 A 460 TRP ASP PHE ARG LEU PRO ARG VAL VAL SER ILE ASN VAL SEQRES 22 A 460 SER GLY HIS LLP TYR GLY LEU THR TYR PRO GLY VAL GLY SEQRES 23 A 460 PHE VAL VAL TRP ARG GLY PRO GLU HIS LEU PRO GLU ASP SEQRES 24 A 460 LEU VAL PHE ARG VAL ASN TYR LEU GLY GLY ASP MET PRO SEQRES 25 A 460 THR PHE THR LEU ASN PHE SER ARG PRO GLY ASN GLN VAL SEQRES 26 A 460 VAL GLY GLN TYR TYR ASN PHE LEU ARG LEU GLY ARG ASP SEQRES 27 A 460 GLY TYR THR LYS VAL MET GLN ALA LEU SER HIS THR ALA SEQRES 28 A 460 ARG TRP LEU GLY ASP GLN LEU ARG GLU VAL ASP HIS CYS SEQRES 29 A 460 GLU VAL ILE SER ASP GLY SER ALA ILE PRO VAL VAL SER SEQRES 30 A 460 PHE ARG LEU ALA GLY ASP ARG GLY TYR THR GLU PHE ASP SEQRES 31 A 460 VAL SER HIS GLU LEU ARG THR PHE GLY TRP GLN VAL PRO SEQRES 32 A 460 ALA TYR THR MET PRO ASP ASN ALA THR ASP VAL ALA VAL SEQRES 33 A 460 LEU ARG ILE VAL VAL ARG GLU GLY LEU SER ALA ASP LEU SEQRES 34 A 460 ALA ARG ALA LEU HIS ASP ASP ALA VAL THR ALA LEU ALA SEQRES 35 A 460 ALA LEU ASP LYS VAL LYS PRO GLY GLY HIS PHE ASP ALA SEQRES 36 A 460 GLN HIS PHE ALA HIS MODRES 9T6A LLP A 277 LYS MODIFIED RESIDUE HET LLP A 277 24 HET ACT A 501 4 HET PEG A 502 14 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *382(H2 O) HELIX 1 AA1 GLY A 19 THR A 23 5 5 HELIX 2 AA2 ASP A 37 MET A 50 1 14 HELIX 3 AA3 SER A 54 ASN A 58 5 5 HELIX 4 AA4 ASP A 68 THR A 78 1 11 HELIX 5 AA5 TYR A 89 PHE A 107 1 19 HELIX 6 AA6 ASP A 116 ALA A 120 5 5 HELIX 7 AA7 GLY A 127 GLY A 148 1 22 HELIX 8 AA8 GLN A 164 PHE A 174 1 11 HELIX 9 AA9 THR A 191 VAL A 199 1 9 HELIX 10 AB1 PRO A 220 GLY A 234 1 15 HELIX 11 AB2 SER A 247 PHE A 250 5 4 HELIX 12 AB3 VAL A 251 HIS A 256 1 6 HELIX 13 AB4 GLY A 292 LEU A 296 5 5 HELIX 14 AB5 PRO A 297 VAL A 301 5 5 HELIX 15 AB6 GLY A 322 VAL A 361 1 40 HELIX 16 AB7 THR A 387 ARG A 396 1 10 HELIX 17 AB8 THR A 397 GLY A 399 5 3 HELIX 18 AB9 SER A 426 LYS A 446 1 21 SHEET 1 AA1 7 THR A 121 THR A 125 0 SHEET 2 AA1 7 GLY A 286 TRP A 290 -1 O TRP A 290 N THR A 121 SHEET 3 AA1 7 VAL A 268 SER A 274 -1 N VAL A 273 O PHE A 287 SHEET 4 AA1 7 VAL A 241 ASP A 244 1 N VAL A 241 O VAL A 269 SHEET 5 AA1 7 THR A 203 ILE A 209 1 N VAL A 206 O HIS A 242 SHEET 6 AA1 7 ASN A 156 GLY A 160 1 N ASN A 156 O ILE A 204 SHEET 7 AA1 7 GLU A 177 LEU A 181 1 O ARG A 179 N LEU A 157 SHEET 1 AA2 2 PHE A 302 VAL A 304 0 SHEET 2 AA2 2 MET A 311 THR A 313 -1 O MET A 311 N VAL A 304 SHEET 1 AA3 4 GLU A 365 ASP A 369 0 SHEET 2 AA3 4 VAL A 375 ARG A 379 -1 O ARG A 379 N GLU A 365 SHEET 3 AA3 4 ALA A 415 VAL A 420 -1 O LEU A 417 N PHE A 378 SHEET 4 AA3 4 ALA A 404 THR A 406 -1 N TYR A 405 O VAL A 416 LINK C HIS A 276 N LLP A 277 1555 1555 1.34 LINK C LLP A 277 N TYR A 278 1555 1555 1.32 CISPEP 1 ASP A 409 ASN A 410 0 1.46 CISPEP 2 ASP A 409 ASN A 410 0 0.45 CRYST1 121.834 121.834 193.281 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008208 0.004739 0.000000 0.00000 SCALE2 0.000000 0.009478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005174 0.00000 CONECT 2094 2117 CONECT 2102 2103 2110 CONECT 2103 2102 2104 2105 CONECT 2104 2103 CONECT 2105 2103 2106 2107 CONECT 2106 2105 CONECT 2107 2105 2108 2109 CONECT 2108 2107 2123 CONECT 2109 2107 2110 2111 CONECT 2110 2102 2109 CONECT 2111 2109 2112 CONECT 2112 2111 2113 CONECT 2113 2112 2114 2115 2116 CONECT 2114 2113 CONECT 2115 2113 CONECT 2116 2113 CONECT 2117 2094 2118 CONECT 2118 2117 2119 2124 CONECT 2119 2118 2120 CONECT 2120 2119 2121 CONECT 2121 2120 2122 CONECT 2122 2121 2123 CONECT 2123 2108 2122 CONECT 2124 2118 2125 2126 CONECT 2125 2124 CONECT 2126 2124 CONECT 3518 3519 3520 3521 CONECT 3519 3518 CONECT 3520 3518 CONECT 3521 3518 CONECT 3522 3524 3526 CONECT 3523 3525 3527 CONECT 3524 3522 CONECT 3525 3523 CONECT 3526 3522 3528 CONECT 3527 3523 3529 CONECT 3528 3526 3530 CONECT 3529 3527 3531 CONECT 3530 3528 3532 CONECT 3531 3529 3533 CONECT 3532 3530 3534 CONECT 3533 3531 3535 CONECT 3534 3532 CONECT 3535 3533 MASTER 419 0 3 18 13 0 0 6 3735 1 44 36 END