HEADER DNA BINDING PROTEIN 07-NOV-25 9T6T TITLE CRYSTAL STRUCTURE OF THE LISTERIA MONOCYTOGENES CADC IN COMPLEX WITH TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO1102 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*AP*TP*TP*CP*AP*AP*AP*CP*AP*AP*AP*CP*AP*CP*TP*TP*GP*AP*AP*T)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*AP*TP*TP*CP*AP*AP*GP*TP*GP*TP*TP*TP*GP*TP*TP*TP*GP*AP*AP*T)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 3 ORGANISM_TAXID: 169963; SOURCE 4 GENE: LMO1102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 10 ORGANISM_TAXID: 169963; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES EGD-E; SOURCE 14 ORGANISM_TAXID: 169963 KEYWDS CADC-DNA COMPLEX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LISBOA,J.H.MORAIS-CABRAL,D.CABANES REVDAT 1 06-MAY-26 9T6T 0 JRNL AUTH J.LISBOA,J.H.MORAIS-CABRAL,D.CABANES JRNL TITL CRYSTAL STRUCTURE OF THE LISTERIA MONOCYTOGENES CADC IN JRNL TITL 2 COMPLEX WITH DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 33722 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6800 - 3.8700 0.96 2677 146 0.1908 0.1987 REMARK 3 2 3.8700 - 3.0800 0.97 2689 143 0.2034 0.2851 REMARK 3 3 3.0800 - 2.6900 1.00 2750 116 0.2452 0.2771 REMARK 3 4 2.6900 - 2.4400 0.99 2722 147 0.2542 0.3128 REMARK 3 5 2.4400 - 2.2700 0.97 2640 135 0.2527 0.3264 REMARK 3 6 2.2700 - 2.1300 0.91 2508 117 0.2670 0.3125 REMARK 3 7 2.1300 - 2.0300 0.98 2674 143 0.2729 0.3259 REMARK 3 8 2.0300 - 1.9400 0.99 2708 129 0.3341 0.3581 REMARK 3 9 1.9400 - 1.8600 0.99 2703 139 0.3712 0.4078 REMARK 3 10 1.8600 - 1.8000 0.99 2732 114 0.3879 0.3987 REMARK 3 11 1.8000 - 1.7400 0.99 2639 150 0.4301 0.4194 REMARK 3 12 1.7400 - 1.6900 0.96 2639 162 0.5213 0.5338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 48.853 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2542 REMARK 3 ANGLE : 0.865 3604 REMARK 3 CHIRALITY : 0.045 446 REMARK 3 PLANARITY : 0.005 302 REMARK 3 DIHEDRAL : 23.172 1074 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 39 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.7388 3.7874 -1.2481 REMARK 3 T TENSOR REMARK 3 T11: 0.1832 T22: 0.2668 REMARK 3 T33: 0.4078 T12: 0.0025 REMARK 3 T13: 0.0459 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.0423 L22: 0.5948 REMARK 3 L33: 0.7375 L12: -0.1507 REMARK 3 L13: -0.1219 L23: -0.6873 REMARK 3 S TENSOR REMARK 3 S11: 0.1407 S12: -0.5221 S13: -0.2853 REMARK 3 S21: -0.0857 S22: -0.0167 S23: -0.0732 REMARK 3 S31: 0.1458 S32: -0.0904 S33: 0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1559 6.2090 12.5729 REMARK 3 T TENSOR REMARK 3 T11: 0.3172 T22: 0.3016 REMARK 3 T33: 0.2976 T12: -0.0276 REMARK 3 T13: 0.0387 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 1.7614 L22: 0.8158 REMARK 3 L33: 1.3832 L12: -0.1315 REMARK 3 L13: 1.0266 L23: 0.3343 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.0057 S13: -0.2186 REMARK 3 S21: 0.3124 S22: 0.0561 S23: -0.2583 REMARK 3 S31: -0.0226 S32: -0.0129 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0212 25.7503 13.2729 REMARK 3 T TENSOR REMARK 3 T11: 0.4893 T22: 0.2989 REMARK 3 T33: 0.3663 T12: 0.0849 REMARK 3 T13: -0.0775 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.7439 L22: 0.6069 REMARK 3 L33: 0.1230 L12: 0.0451 REMARK 3 L13: -0.2759 L23: -0.1868 REMARK 3 S TENSOR REMARK 3 S11: -0.2722 S12: 0.0434 S13: 0.0044 REMARK 3 S21: 0.5604 S22: 0.3020 S23: 0.1689 REMARK 3 S31: -0.5552 S32: -0.2621 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9822 25.2780 -13.3859 REMARK 3 T TENSOR REMARK 3 T11: 0.5675 T22: 0.3411 REMARK 3 T33: 0.3686 T12: 0.0095 REMARK 3 T13: -0.0244 T23: 0.0216 REMARK 3 L TENSOR REMARK 3 L11: 0.5158 L22: 1.4400 REMARK 3 L33: 0.4964 L12: -0.1605 REMARK 3 L13: -0.3810 L23: 0.2884 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: -0.1035 S13: -0.0563 REMARK 3 S21: -0.3976 S22: 0.2091 S23: 0.1415 REMARK 3 S31: -0.5002 S32: 0.0674 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7392 3.7536 -2.9883 REMARK 3 T TENSOR REMARK 3 T11: 0.3724 T22: 0.3541 REMARK 3 T33: 0.3178 T12: -0.0007 REMARK 3 T13: -0.0352 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.1429 L22: 0.7435 REMARK 3 L33: 0.5951 L12: -0.2173 REMARK 3 L13: 0.9883 L23: -0.0712 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.0673 S13: -0.2490 REMARK 3 S21: -0.0724 S22: 0.1383 S23: -0.0259 REMARK 3 S31: 0.0299 S32: -0.0452 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7755 7.0069 -13.2998 REMARK 3 T TENSOR REMARK 3 T11: 0.2976 T22: 0.2962 REMARK 3 T33: 0.3393 T12: 0.0098 REMARK 3 T13: -0.0119 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.0598 L22: 0.5627 REMARK 3 L33: 1.1580 L12: -0.0254 REMARK 3 L13: 0.9771 L23: -0.1784 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: 0.2502 S13: -0.1472 REMARK 3 S21: -0.0494 S22: -0.0420 S23: 0.0738 REMARK 3 S31: 0.1933 S32: 0.0311 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2506 25.8172 -13.2025 REMARK 3 T TENSOR REMARK 3 T11: 0.4565 T22: 0.4223 REMARK 3 T33: 0.3552 T12: 0.0182 REMARK 3 T13: -0.0407 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.2006 L22: 0.6558 REMARK 3 L33: 0.3158 L12: 0.1743 REMARK 3 L13: -0.1066 L23: 0.3241 REMARK 3 S TENSOR REMARK 3 S11: -0.2455 S12: 0.0577 S13: -0.0552 REMARK 3 S21: -0.6787 S22: 0.3665 S23: 0.0023 REMARK 3 S31: -0.5635 S32: 0.2785 S33: 0.0040 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2300 25.2797 13.3287 REMARK 3 T TENSOR REMARK 3 T11: 0.5546 T22: 0.4404 REMARK 3 T33: 0.4164 T12: 0.0054 REMARK 3 T13: -0.0176 T23: 0.0474 REMARK 3 L TENSOR REMARK 3 L11: 0.6737 L22: 1.3018 REMARK 3 L33: 0.5568 L12: 0.2035 REMARK 3 L13: -0.4603 L23: -0.3974 REMARK 3 S TENSOR REMARK 3 S11: 0.1444 S12: 0.1071 S13: -0.0165 REMARK 3 S21: 0.5471 S22: 0.2491 S23: -0.4361 REMARK 3 S31: -0.1750 S32: 0.1688 S33: 0.0087 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE DATA WERE INITIALLY CONSISTENT WITH REMARK 3 A HIGHER-SYMMETRY SPACE GROUP (C21); HOWEVER, REFINEMENT IN THIS REMARK 3 SETTING IMPOSED CONSTRAINTS THAT PREVENTED INDEPENDENT MODELLING REMARK 3 OF THE COMPLEMENTARY DNA STRANDS. ANALYSIS OF THE MODEL AND REMARK 3 ELECTRON DENSITY MAPS INDICATED THAT THE STRANDS ARE NOT RELATED REMARK 3 BY STRICT SYMMETRY. REFINEMENT IN THE LOWER-SYMMETRY SPACE GROUP REMARK 3 P21 ALLOWED INDEPENDENT MODELLING AND RESULTED IN IMPROVED REMARK 3 INTERPRETABILITY OF THE ELECTRON DENSITY, DESPITE HIGHER RWORK REMARK 3 AND RFREE VALUES. REMARK 4 REMARK 4 9T6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292151988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9677 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33727 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 42.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05328 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.21.2_5419 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.005M SODIUM CHROMATE TETRAHYDRATE, REMARK 280 0.005M SODIUM MOLYBDATE DIHYDRATE, 0.005M SODIUM TUNGSTATE REMARK 280 DIHYDRATE, 0.005M SODIUM ORTHOVANADATE, 0.1M BES PH 7.5, 0.1M REMARK 280 TRIETHANOLAMINE (TEA) PH 7.5, 15% W/V PEG 3000, 20% V/V 1, 2, 4- REMARK 280 BUTANETRIOL, 1% W/V NDSB 256, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.03650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 301 O HOH B 303 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 301 O HOH C 101 2646 1.71 REMARK 500 O HOH A 312 O HOH B 311 1455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 99 114.17 -160.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CR A 201 CR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 12 OE2 REMARK 620 2 GLU A 54 OE1 54.1 REMARK 620 3 GLU A 54 OE2 52.2 2.0 REMARK 620 4 HOH A 301 O 55.0 1.1 3.0 REMARK 620 5 DA C 7 OP1 41.1 39.1 38.2 39.1 REMARK 620 6 HOH C 101 O 55.1 1.1 2.9 1.1 40.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CR B 201 CR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 13 OE1 REMARK 620 2 GLU A 13 OE2 53.9 REMARK 620 3 GLN A 16 OE1 79.5 113.3 REMARK 620 4 HOH A 312 O 42.1 90.5 39.8 REMARK 620 5 DC C 8 OP2 82.2 107.0 11.8 46.5 REMARK 620 6 ASP B 24 OD1 43.6 93.2 40.1 3.5 47.6 REMARK 620 7 HOH B 304 O 42.1 92.4 41.9 4.3 49.5 1.9 REMARK 620 8 HOH B 311 O 41.3 90.4 41.1 1.6 48.0 2.9 3.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CR B 202 CR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 24 OD1 REMARK 620 2 GLU B 13 OE1 62.4 REMARK 620 3 GLU B 13 OE2 63.4 1.3 REMARK 620 4 GLN B 16 OE1 59.9 3.3 3.7 REMARK 620 5 HOH B 301 O 61.7 1.6 1.9 1.9 REMARK 620 6 HOH B 302 O 59.8 2.9 4.1 3.1 3.1 REMARK 620 7 HOH B 303 O 61.6 3.1 2.9 1.9 1.6 4.4 REMARK 620 8 DT D 8 OP2 61.1 73.2 72.9 70.3 71.6 73.1 70.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CR B 203 CR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 12 OE2 REMARK 620 2 GLU B 54 OE1 54.1 REMARK 620 3 GLU B 54 OE2 52.2 2.0 REMARK 620 4 HOH B 322 O 55.1 1.2 3.0 REMARK 620 5 DG D 7 OP1 41.7 39.3 38.4 39.3 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9T6R RELATED DB: PDB REMARK 900 RELATED ID: 9T6S RELATED DB: PDB DBREF 9T6T A 11 111 UNP Q8Y817 Q8Y817_LISMO 11 111 DBREF 9T6T C 1 20 PDB 9T6T 9T6T 1 20 DBREF 9T6T B 11 111 UNP Q8Y817 Q8Y817_LISMO 11 111 DBREF 9T6T D 1 20 PDB 9T6T 9T6T 1 20 SEQADV 9T6T LEU A 112 UNP Q8Y817 EXPRESSION TAG SEQADV 9T6T LEU B 112 UNP Q8Y817 EXPRESSION TAG SEQRES 1 A 102 ASP GLU GLU LYS VAL GLN LYS ILE GLN THR SER LEU GLU SEQRES 2 A 102 ASP LYS LYS ILE SER ASP ILE SER GLN ILE PHE LYS ALA SEQRES 3 A 102 LEU SER GLU GLU THR ARG LEU THR ILE ALA TYR ALA LEU SEQRES 4 A 102 THR LEU GLU LYS GLU LEU CYS VAL CYS ASP ILE SER ILE SEQRES 5 A 102 ILE VAL LYS SER THR VAL ALA THR THR SER HIS HIS LEU SEQRES 6 A 102 LYS ILE LEU SER LYS ALA GLY VAL VAL GLN ASN LYS LYS SEQRES 7 A 102 ILE GLY LYS MET VAL TYR TYR SER LEU ASN ASN SER LEU SEQRES 8 A 102 VAL GLU THR LEU ILE LYS ASP ILE VAL LEU LEU SEQRES 1 C 20 DA DT DT DC DA DA DA DC DA DA DA DC DA SEQRES 2 C 20 DC DT DT DG DA DA DT SEQRES 1 B 102 ASP GLU GLU LYS VAL GLN LYS ILE GLN THR SER LEU GLU SEQRES 2 B 102 ASP LYS LYS ILE SER ASP ILE SER GLN ILE PHE LYS ALA SEQRES 3 B 102 LEU SER GLU GLU THR ARG LEU THR ILE ALA TYR ALA LEU SEQRES 4 B 102 THR LEU GLU LYS GLU LEU CYS VAL CYS ASP ILE SER ILE SEQRES 5 B 102 ILE VAL LYS SER THR VAL ALA THR THR SER HIS HIS LEU SEQRES 6 B 102 LYS ILE LEU SER LYS ALA GLY VAL VAL GLN ASN LYS LYS SEQRES 7 B 102 ILE GLY LYS MET VAL TYR TYR SER LEU ASN ASN SER LEU SEQRES 8 B 102 VAL GLU THR LEU ILE LYS ASP ILE VAL LEU LEU SEQRES 1 D 20 DA DT DT DC DA DA DG DT DG DT DT DT DG SEQRES 2 D 20 DT DT DT DG DA DA DT HET CR A 201 1 HET CR B 201 1 HET CR B 202 1 HET CR B 203 1 HETNAM CR CHROMIUM ION FORMUL 5 CR 4(CR 3+) FORMUL 9 HOH *145(H2 O) HELIX 1 AA1 ASP A 11 SER A 21 1 11 HELIX 2 AA2 LEU A 22 LYS A 25 5 4 HELIX 3 AA3 LYS A 26 LEU A 37 1 12 HELIX 4 AA4 GLU A 39 GLU A 52 1 14 HELIX 5 AA5 VAL A 57 LYS A 65 1 9 HELIX 6 AA6 THR A 67 ALA A 81 1 15 HELIX 7 AA7 ASN A 99 ILE A 109 1 11 HELIX 8 AA8 GLU B 12 SER B 21 1 10 HELIX 9 AA9 LEU B 22 LYS B 25 5 4 HELIX 10 AB1 LYS B 26 LEU B 37 1 12 HELIX 11 AB2 GLU B 39 GLU B 52 1 14 HELIX 12 AB3 VAL B 57 LYS B 65 1 9 HELIX 13 AB4 THR B 67 ALA B 81 1 15 HELIX 14 AB5 ASN B 99 ILE B 109 1 11 SHEET 1 AA1 3 LEU A 55 CYS A 56 0 SHEET 2 AA1 3 MET A 92 LEU A 97 -1 O TYR A 95 N LEU A 55 SHEET 3 AA1 3 VAL A 84 ILE A 89 -1 N LYS A 87 O TYR A 94 SHEET 1 AA2 3 LEU B 55 CYS B 56 0 SHEET 2 AA2 3 MET B 92 LEU B 97 -1 O TYR B 95 N LEU B 55 SHEET 3 AA2 3 VAL B 84 ILE B 89 -1 N LYS B 87 O TYR B 94 LINK OE2 GLU A 12 CR CR A 201 1555 1454 2.62 LINK OE1 GLU A 13 CR CR B 201 1555 1455 2.35 LINK OE2 GLU A 13 CR CR B 201 1555 1455 2.43 LINK OE1 GLN A 16 CR CR B 201 1555 1455 2.43 LINK OD1 ASP A 24 CR CR B 202 1555 1455 2.23 LINK OE1 GLU A 54 CR CR A 201 1555 1555 2.21 LINK OE2 GLU A 54 CR CR A 201 1555 1555 2.22 LINK CR CR A 201 O HOH A 301 1555 1555 2.16 LINK CR CR A 201 OP1 DA C 7 2656 1555 2.53 LINK CR CR A 201 O HOH C 101 1555 2646 2.14 LINK O HOH A 312 CR CR B 201 1655 1555 2.16 LINK OP2 DC C 8 CR CR B 201 1555 2655 2.31 LINK OE2 GLU B 12 CR CR B 203 1555 1656 2.60 LINK OE1 GLU B 13 CR CR B 202 1555 1555 2.13 LINK OE2 GLU B 13 CR CR B 202 1555 1555 2.15 LINK OE1 GLN B 16 CR CR B 202 1555 1555 2.28 LINK OD1 ASP B 24 CR CR B 201 1555 1555 2.07 LINK OE1 GLU B 54 CR CR B 203 1555 1555 2.17 LINK OE2 GLU B 54 CR CR B 203 1555 1555 2.18 LINK CR CR B 201 O HOH B 304 1555 1555 2.16 LINK CR CR B 201 O HOH B 311 1555 1555 2.21 LINK CR CR B 202 O HOH B 301 1555 1555 2.23 LINK CR CR B 202 O HOH B 302 1555 1555 2.18 LINK CR CR B 202 O HOH B 303 1555 1555 2.17 LINK CR CR B 202 OP2 DT D 8 2655 1555 2.35 LINK CR CR B 203 O HOH B 322 1555 1454 2.13 LINK CR CR B 203 OP1 DG D 7 2554 1555 2.51 CRYST1 50.503 82.073 38.476 90.00 98.31 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019801 0.000000 0.002891 0.00000 SCALE2 0.000000 0.012184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026266 0.00000 CONECT 355 2435 CONECT 356 2435 CONECT 1240 2437 CONECT 1241 2437 CONECT 1265 2437 CONECT 1329 2436 CONECT 1570 2438 CONECT 1571 2438 CONECT 2435 355 356 2439 CONECT 2436 1329 2512 2519 CONECT 2437 1240 1241 1265 2509 CONECT 2437 2510 2511 CONECT 2438 1570 1571 CONECT 2439 2435 CONECT 2509 2437 CONECT 2510 2437 CONECT 2511 2437 CONECT 2512 2436 CONECT 2519 2436 MASTER 430 0 4 14 6 0 0 6 2561 4 19 20 END