HEADER DNA 12-NOV-25 9T8F TITLE CRYSTAL STRUCTURE OF TRABECTEDIN BOUND TO 10-MER DUPLEX DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*GP*CP*AP*TP*CP*G)-3'); COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 4 ORGANISM_TAXID: 2853804 KEYWDS ECTEINASCIDIN, DNA DUPLEX, COVALENT BOND, DNA EXPDTA X-RAY DIFFRACTION AUTHOR T.DARRIERE,F.M.RUIZ,C.CUEVAS,C.FERNANDEZ-TORNERO REVDAT 1 29-JUL-26 9T8F 0 JRNL AUTH T.DARRIERE,F.M.RUIZ,M.MARTINEZ-DIEZ,M.LIMA RIBEIRO,C.CUEVAS, JRNL AUTH 2 C.FERNANDEZ-TORNERO JRNL TITL THE STRUCTURES OF ECTEINASCIDINS BOUND TO DNA SHED LIGHT ON JRNL TITL 2 THEIR MECHANISM OF ACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.105) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 553 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 682 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.4790 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.5330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1616 REMARK 3 HETEROGEN ATOMS : 269 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.30300 REMARK 3 B22 (A**2) : 1.18400 REMARK 3 B33 (A**2) : -7.48700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.491 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.348 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2118 ; 0.006 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 993 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3271 ; 1.972 ; 1.822 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2387 ; 0.490 ; 1.557 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 35 ;22.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 357 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1218 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 303 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 404 ; 0.244 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 24 ; 0.265 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 848 ; 0.263 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 59 ; 0.186 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.160 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2118 ; 6.733 ; 7.514 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2118 ; 6.733 ; 7.514 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3271 ;10.095 ;13.683 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3272 ;10.093 ;13.681 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9T8F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292150630. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.35 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10587 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 25.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 1.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MPD, POTASSIUM CHLORIDE, LITHIUM REMARK 280 CHLORIDE, SPERMINE, PH 6.35, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 13.03900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.25300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.47100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.25300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 13.03900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.47100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H21 DG H 5 O5 ECT G 101 1.46 REMARK 500 O2 DC G 9 H22 DG H 2 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OP1 DA E 7 H39 ECT B 101 1545 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 5 C2 DG D 5 N2 0.102 REMARK 500 DG F 2 C2 DG F 2 N2 0.063 REMARK 500 DG G 5 C2 DG G 5 N2 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 4 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DT A 4 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC B 6 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 4 O3' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 DG D 5 N1 - C2 - N2 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG D 10 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG E 5 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG F 2 N1 - C2 - N2 ANGL. DEV. = 6.5 DEGREES REMARK 500 DG F 2 N3 - C2 - N2 ANGL. DEV. = -4.7 DEGREES REMARK 500 DG F 5 N3 - C2 - N2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC F 6 O3' - P - OP1 ANGL. DEV. = 7.3 DEGREES REMARK 500 DC G 1 O4' - C1' - N1 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG G 5 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DA G 7 O3' - P - O5' ANGL. DEV. = -12.5 DEGREES REMARK 500 DT H 4 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA H 7 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 8 O2 REMARK 620 2 DT B 4 O2 77.8 REMARK 620 3 HOH B 202 O 169.4 105.0 REMARK 620 4 DG C 10 O3' 80.0 87.2 89.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 10 O3' REMARK 620 2 DT C 8 O2 57.7 REMARK 620 3 DT D 4 O2 93.1 94.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K E 101 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT E 4 O2 REMARK 620 2 DT F 8 O2 87.8 REMARK 620 3 DG H 10 O3' 95.0 59.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K G 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT G 4 O2 REMARK 620 2 DT H 8 O2 64.8 REMARK 620 N 1 DBREF 9T8F A 1 10 PDB 9T8F 9T8F 1 10 DBREF 9T8F B 1 10 PDB 9T8F 9T8F 1 10 DBREF 9T8F C 1 10 PDB 9T8F 9T8F 1 10 DBREF 9T8F D 1 10 PDB 9T8F 9T8F 1 10 DBREF 9T8F E 1 10 PDB 9T8F 9T8F 1 10 DBREF 9T8F F 1 10 PDB 9T8F 9T8F 1 10 DBREF 9T8F G 1 10 PDB 9T8F 9T8F 1 10 DBREF 9T8F H 1 10 PDB 9T8F 9T8F 1 10 SEQRES 1 A 10 DC DG DA DT DG DC DA DT DC DG SEQRES 1 B 10 DC DG DA DT DG DC DA DT DC DG SEQRES 1 C 10 DC DG DA DT DG DC DA DT DC DG SEQRES 1 D 10 DC DG DA DT DG DC DA DT DC DG SEQRES 1 E 10 DC DG DA DT DG DC DA DT DC DG SEQRES 1 F 10 DC DG DA DT DG DC DA DT DC DG SEQRES 1 G 10 DC DG DA DT DG DC DA DT DC DG SEQRES 1 H 10 DC DG DA DT DG DC DA DT DC DG HET K A 101 1 HET K A 102 1 HET ECT B 101 95 HET ECT D 101 95 HET K E 101 1 HET ECT F 101 95 HET ECT F 102 95 HET ECT G 101 95 HET K G 102 1 HETNAM K POTASSIUM ION HETNAM ECT ECTEINASCIDIN 743 HETSYN ECT TRABECTEDIN FORMUL 9 K 4(K 1+) FORMUL 11 ECT 5(C39 H43 N3 O11 S) FORMUL 18 HOH *8(H2 O) LINK N2 DG B 5 C40 ECT B 101 1555 1555 1.46 LINK N2 DG D 5 C40 ECT D 101 1555 1555 1.47 LINK N2 DG F 2 C40 ECT F 102 1555 1555 1.46 LINK N2 DG F 5 C40 ECT F 101 1555 1555 1.45 LINK N2 DG G 5 C40 ECT G 101 1555 1555 1.47 LINK O2 DT A 8 K K A 101 1555 1555 2.78 LINK O3' DG A 10 K K A 102 1555 1555 3.18 LINK K K A 101 O2 DT B 4 1555 1555 3.13 LINK K K A 101 O HOH B 202 1555 1555 3.48 LINK K K A 101 O3' DG C 10 1555 1555 2.62 LINK K K A 102 O2 DT C 8 1555 1555 2.78 LINK K K A 102 O2 DT D 4 1555 1555 2.50 LINK O2 DT E 4 K K E 101 1555 1555 2.82 LINK K K E 101 O2 DT F 8 1555 1555 2.68 LINK K K E 101 O3' DG H 10 1555 1555 3.34 LINK O2 DT G 4 K K G 102 1555 1555 3.38 LINK K K G 102 O2 DT H 8 1555 1555 3.35 CRYST1 26.078 40.942 234.506 90.00 90.00 90.00 P 21 21 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.038346 0.000000 0.000000 0.00000 SCALE2 0.000000 0.024425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004264 0.00000 CONECT 233 2524 CONECT 290 2525 CONECT 422 2524 CONECT 460 2563 CONECT 864 2525 CONECT 921 2524 CONECT 1053 2525 CONECT 1091 2658 CONECT 1368 2716 CONECT 1625 2849 CONECT 1721 2754 CONECT 1809 2716 CONECT 1998 3002 CONECT 2036 2944 CONECT 2440 3002 CONECT 2497 2716 CONECT 2524 233 422 921 3007 CONECT 2525 290 864 1053 CONECT 2526 2527 2550 2579 2580 CONECT 2527 2526 2528 2544 2581 CONECT 2528 2527 2529 2541 CONECT 2529 2528 2530 2533 CONECT 2530 2529 2531 CONECT 2531 2530 2532 2582 2583 CONECT 2532 2531 2533 CONECT 2533 2529 2532 2534 CONECT 2534 2533 2535 2536 CONECT 2535 2534 2584 2585 2586 CONECT 2536 2534 2537 2541 CONECT 2537 2536 2538 CONECT 2538 2537 2539 2540 CONECT 2539 2538 CONECT 2540 2538 2587 2588 2589 CONECT 2541 2528 2536 2542 CONECT 2542 2541 2543 2545 2590 CONECT 2543 2542 2544 2567 2591 CONECT 2544 2527 2543 2563 CONECT 2545 2542 2546 CONECT 2546 2545 2547 2592 2593 CONECT 2547 2546 2548 2551 2562 CONECT 2548 2547 2549 2550 CONECT 2549 2548 CONECT 2550 2526 2548 CONECT 2551 2547 2552 2559 CONECT 2552 2551 2553 2594 CONECT 2553 2552 2554 2556 CONECT 2554 2553 2555 CONECT 2555 2554 2595 2596 2597 CONECT 2556 2553 2557 2558 CONECT 2557 2556 2598 CONECT 2558 2556 2559 2599 CONECT 2559 2551 2558 2560 CONECT 2560 2559 2561 2600 2601 CONECT 2561 2560 2562 2602 2603 CONECT 2562 2547 2561 2604 CONECT 2563 460 2544 2564 2605 CONECT 2564 2563 2565 2578 2606 CONECT 2565 2564 2566 2567 CONECT 2566 2565 2607 2608 2609 CONECT 2567 2543 2565 2568 2610 CONECT 2568 2567 2569 2577 CONECT 2569 2568 2570 2571 CONECT 2570 2569 2611 CONECT 2571 2569 2572 2574 CONECT 2572 2571 2573 CONECT 2573 2572 2612 2613 2614 CONECT 2574 2571 2575 2576 CONECT 2575 2574 2615 2616 2617 CONECT 2576 2574 2577 2618 CONECT 2577 2568 2576 2578 CONECT 2578 2564 2577 2619 2620 CONECT 2579 2526 CONECT 2580 2526 CONECT 2581 2527 CONECT 2582 2531 CONECT 2583 2531 CONECT 2584 2535 CONECT 2585 2535 CONECT 2586 2535 CONECT 2587 2540 CONECT 2588 2540 CONECT 2589 2540 CONECT 2590 2542 CONECT 2591 2543 CONECT 2592 2546 CONECT 2593 2546 CONECT 2594 2552 CONECT 2595 2555 CONECT 2596 2555 CONECT 2597 2555 CONECT 2598 2557 CONECT 2599 2558 CONECT 2600 2560 CONECT 2601 2560 CONECT 2602 2561 CONECT 2603 2561 CONECT 2604 2562 CONECT 2605 2563 CONECT 2606 2564 CONECT 2607 2566 CONECT 2608 2566 CONECT 2609 2566 CONECT 2610 2567 CONECT 2611 2570 CONECT 2612 2573 CONECT 2613 2573 CONECT 2614 2573 CONECT 2615 2575 CONECT 2616 2575 CONECT 2617 2575 CONECT 2618 2576 CONECT 2619 2578 CONECT 2620 2578 CONECT 2621 2622 2645 2674 2675 CONECT 2622 2621 2623 2639 2676 CONECT 2623 2622 2624 2636 CONECT 2624 2623 2625 2628 CONECT 2625 2624 2626 CONECT 2626 2625 2627 2677 2678 CONECT 2627 2626 2628 CONECT 2628 2624 2627 2629 CONECT 2629 2628 2630 2631 CONECT 2630 2629 2679 2680 2681 CONECT 2631 2629 2632 2636 CONECT 2632 2631 2633 CONECT 2633 2632 2634 2635 CONECT 2634 2633 CONECT 2635 2633 2682 2683 2684 CONECT 2636 2623 2631 2637 CONECT 2637 2636 2638 2640 2685 CONECT 2638 2637 2639 2662 2686 CONECT 2639 2622 2638 2658 CONECT 2640 2637 2641 CONECT 2641 2640 2642 2687 2688 CONECT 2642 2641 2643 2646 2657 CONECT 2643 2642 2644 2645 CONECT 2644 2643 CONECT 2645 2621 2643 CONECT 2646 2642 2647 2654 CONECT 2647 2646 2648 2689 CONECT 2648 2647 2649 2651 CONECT 2649 2648 2650 CONECT 2650 2649 2690 2691 2692 CONECT 2651 2648 2652 2653 CONECT 2652 2651 2693 CONECT 2653 2651 2654 2694 CONECT 2654 2646 2653 2655 CONECT 2655 2654 2656 2695 2696 CONECT 2656 2655 2657 2697 2698 CONECT 2657 2642 2656 2699 CONECT 2658 1091 2639 2659 2700 CONECT 2659 2658 2660 2673 2701 CONECT 2660 2659 2661 2662 CONECT 2661 2660 2702 2703 2704 CONECT 2662 2638 2660 2663 2705 CONECT 2663 2662 2664 2672 CONECT 2664 2663 2665 2666 CONECT 2665 2664 2706 CONECT 2666 2664 2667 2669 CONECT 2667 2666 2668 CONECT 2668 2667 2707 2708 2709 CONECT 2669 2666 2670 2671 CONECT 2670 2669 2710 2711 2712 CONECT 2671 2669 2672 2713 CONECT 2672 2663 2671 2673 CONECT 2673 2659 2672 2714 2715 CONECT 2674 2621 CONECT 2675 2621 CONECT 2676 2622 CONECT 2677 2626 CONECT 2678 2626 CONECT 2679 2630 CONECT 2680 2630 CONECT 2681 2630 CONECT 2682 2635 CONECT 2683 2635 CONECT 2684 2635 CONECT 2685 2637 CONECT 2686 2638 CONECT 2687 2641 CONECT 2688 2641 CONECT 2689 2647 CONECT 2690 2650 CONECT 2691 2650 CONECT 2692 2650 CONECT 2693 2652 CONECT 2694 2653 CONECT 2695 2655 CONECT 2696 2655 CONECT 2697 2656 CONECT 2698 2656 CONECT 2699 2657 CONECT 2700 2658 CONECT 2701 2659 CONECT 2702 2661 CONECT 2703 2661 CONECT 2704 2661 CONECT 2705 2662 CONECT 2706 2665 CONECT 2707 2668 CONECT 2708 2668 CONECT 2709 2668 CONECT 2710 2670 CONECT 2711 2670 CONECT 2712 2670 CONECT 2713 2671 CONECT 2714 2673 CONECT 2715 2673 CONECT 2716 1368 1809 2497 CONECT 2717 2718 2741 2770 2771 CONECT 2718 2717 2719 2735 2772 CONECT 2719 2718 2720 2732 CONECT 2720 2719 2721 2724 CONECT 2721 2720 2722 CONECT 2722 2721 2723 2773 2774 CONECT 2723 2722 2724 CONECT 2724 2720 2723 2725 CONECT 2725 2724 2726 2727 CONECT 2726 2725 2775 2776 2777 CONECT 2727 2725 2728 2732 CONECT 2728 2727 2729 CONECT 2729 2728 2730 2731 CONECT 2730 2729 CONECT 2731 2729 2778 2779 2780 CONECT 2732 2719 2727 2733 CONECT 2733 2732 2734 2736 2781 CONECT 2734 2733 2735 2758 2782 CONECT 2735 2718 2734 2754 CONECT 2736 2733 2737 CONECT 2737 2736 2738 2783 2784 CONECT 2738 2737 2739 2742 2753 CONECT 2739 2738 2740 2741 CONECT 2740 2739 CONECT 2741 2717 2739 CONECT 2742 2738 2743 2750 CONECT 2743 2742 2744 2785 CONECT 2744 2743 2745 2747 CONECT 2745 2744 2746 CONECT 2746 2745 2786 2787 2788 CONECT 2747 2744 2748 2749 CONECT 2748 2747 2789 CONECT 2749 2747 2750 2790 CONECT 2750 2742 2749 2751 CONECT 2751 2750 2752 2791 2792 CONECT 2752 2751 2753 2793 2794 CONECT 2753 2738 2752 2795 CONECT 2754 1721 2735 2755 2796 CONECT 2755 2754 2756 2769 2797 CONECT 2756 2755 2757 2758 CONECT 2757 2756 2798 2799 2800 CONECT 2758 2734 2756 2759 2801 CONECT 2759 2758 2760 2768 CONECT 2760 2759 2761 2762 CONECT 2761 2760 2802 CONECT 2762 2760 2763 2765 CONECT 2763 2762 2764 CONECT 2764 2763 2803 2804 2805 CONECT 2765 2762 2766 2767 CONECT 2766 2765 2806 2807 2808 CONECT 2767 2765 2768 2809 CONECT 2768 2759 2767 2769 CONECT 2769 2755 2768 2810 2811 CONECT 2770 2717 CONECT 2771 2717 CONECT 2772 2718 CONECT 2773 2722 CONECT 2774 2722 CONECT 2775 2726 CONECT 2776 2726 CONECT 2777 2726 CONECT 2778 2731 CONECT 2779 2731 CONECT 2780 2731 CONECT 2781 2733 CONECT 2782 2734 CONECT 2783 2737 CONECT 2784 2737 CONECT 2785 2743 CONECT 2786 2746 CONECT 2787 2746 CONECT 2788 2746 CONECT 2789 2748 CONECT 2790 2749 CONECT 2791 2751 CONECT 2792 2751 CONECT 2793 2752 CONECT 2794 2752 CONECT 2795 2753 CONECT 2796 2754 CONECT 2797 2755 CONECT 2798 2757 CONECT 2799 2757 CONECT 2800 2757 CONECT 2801 2758 CONECT 2802 2761 CONECT 2803 2764 CONECT 2804 2764 CONECT 2805 2764 CONECT 2806 2766 CONECT 2807 2766 CONECT 2808 2766 CONECT 2809 2767 CONECT 2810 2769 CONECT 2811 2769 CONECT 2812 2813 2836 2865 2866 CONECT 2813 2812 2814 2830 2867 CONECT 2814 2813 2815 2827 CONECT 2815 2814 2816 2819 CONECT 2816 2815 2817 CONECT 2817 2816 2818 2868 2869 CONECT 2818 2817 2819 CONECT 2819 2815 2818 2820 CONECT 2820 2819 2821 2822 CONECT 2821 2820 2870 2871 2872 CONECT 2822 2820 2823 2827 CONECT 2823 2822 2824 CONECT 2824 2823 2825 2826 CONECT 2825 2824 CONECT 2826 2824 2873 2874 2875 CONECT 2827 2814 2822 2828 CONECT 2828 2827 2829 2831 2876 CONECT 2829 2828 2830 2853 2877 CONECT 2830 2813 2829 2849 CONECT 2831 2828 2832 CONECT 2832 2831 2833 2878 2879 CONECT 2833 2832 2834 2837 2848 CONECT 2834 2833 2835 2836 CONECT 2835 2834 CONECT 2836 2812 2834 CONECT 2837 2833 2838 2845 CONECT 2838 2837 2839 2880 CONECT 2839 2838 2840 2842 CONECT 2840 2839 2841 CONECT 2841 2840 2881 2882 2883 CONECT 2842 2839 2843 2844 CONECT 2843 2842 2884 CONECT 2844 2842 2845 2885 CONECT 2845 2837 2844 2846 CONECT 2846 2845 2847 2886 2887 CONECT 2847 2846 2848 2888 2889 CONECT 2848 2833 2847 2890 CONECT 2849 1625 2830 2850 2891 CONECT 2850 2849 2851 2864 2892 CONECT 2851 2850 2852 2853 CONECT 2852 2851 2893 2894 2895 CONECT 2853 2829 2851 2854 2896 CONECT 2854 2853 2855 2863 CONECT 2855 2854 2856 2857 CONECT 2856 2855 2897 CONECT 2857 2855 2858 2860 CONECT 2858 2857 2859 CONECT 2859 2858 2898 2899 2900 CONECT 2860 2857 2861 2862 CONECT 2861 2860 2901 2902 2903 CONECT 2862 2860 2863 2904 CONECT 2863 2854 2862 2864 CONECT 2864 2850 2863 2905 2906 CONECT 2865 2812 CONECT 2866 2812 CONECT 2867 2813 CONECT 2868 2817 CONECT 2869 2817 CONECT 2870 2821 CONECT 2871 2821 CONECT 2872 2821 CONECT 2873 2826 CONECT 2874 2826 CONECT 2875 2826 CONECT 2876 2828 CONECT 2877 2829 CONECT 2878 2832 CONECT 2879 2832 CONECT 2880 2838 CONECT 2881 2841 CONECT 2882 2841 CONECT 2883 2841 CONECT 2884 2843 CONECT 2885 2844 CONECT 2886 2846 CONECT 2887 2846 CONECT 2888 2847 CONECT 2889 2847 CONECT 2890 2848 CONECT 2891 2849 CONECT 2892 2850 CONECT 2893 2852 CONECT 2894 2852 CONECT 2895 2852 CONECT 2896 2853 CONECT 2897 2856 CONECT 2898 2859 CONECT 2899 2859 CONECT 2900 2859 CONECT 2901 2861 CONECT 2902 2861 CONECT 2903 2861 CONECT 2904 2862 CONECT 2905 2864 CONECT 2906 2864 CONECT 2907 2908 2931 2960 2961 CONECT 2908 2907 2909 2925 2962 CONECT 2909 2908 2910 2922 CONECT 2910 2909 2911 2914 CONECT 2911 2910 2912 CONECT 2912 2911 2913 2963 2964 CONECT 2913 2912 2914 CONECT 2914 2910 2913 2915 CONECT 2915 2914 2916 2917 CONECT 2916 2915 2965 2966 2967 CONECT 2917 2915 2918 2922 CONECT 2918 2917 2919 CONECT 2919 2918 2920 2921 CONECT 2920 2919 CONECT 2921 2919 2968 2969 2970 CONECT 2922 2909 2917 2923 CONECT 2923 2922 2924 2926 2971 CONECT 2924 2923 2925 2948 2972 CONECT 2925 2908 2924 2944 CONECT 2926 2923 2927 CONECT 2927 2926 2928 2973 2974 CONECT 2928 2927 2929 2932 2943 CONECT 2929 2928 2930 2931 CONECT 2930 2929 CONECT 2931 2907 2929 CONECT 2932 2928 2933 2940 CONECT 2933 2932 2934 2975 CONECT 2934 2933 2935 2937 CONECT 2935 2934 2936 CONECT 2936 2935 2976 2977 2978 CONECT 2937 2934 2938 2939 CONECT 2938 2937 2979 CONECT 2939 2937 2940 2980 CONECT 2940 2932 2939 2941 CONECT 2941 2940 2942 2981 2982 CONECT 2942 2941 2943 2983 2984 CONECT 2943 2928 2942 2985 CONECT 2944 2036 2925 2945 2986 CONECT 2945 2944 2946 2959 2987 CONECT 2946 2945 2947 2948 CONECT 2947 2946 2988 2989 2990 CONECT 2948 2924 2946 2949 2991 CONECT 2949 2948 2950 2958 CONECT 2950 2949 2951 2952 CONECT 2951 2950 2992 CONECT 2952 2950 2953 2955 CONECT 2953 2952 2954 CONECT 2954 2953 2993 2994 2995 CONECT 2955 2952 2956 2957 CONECT 2956 2955 2996 2997 2998 CONECT 2957 2955 2958 2999 CONECT 2958 2949 2957 2959 CONECT 2959 2945 2958 3000 3001 CONECT 2960 2907 CONECT 2961 2907 CONECT 2962 2908 CONECT 2963 2912 CONECT 2964 2912 CONECT 2965 2916 CONECT 2966 2916 CONECT 2967 2916 CONECT 2968 2921 CONECT 2969 2921 CONECT 2970 2921 CONECT 2971 2923 CONECT 2972 2924 CONECT 2973 2927 CONECT 2974 2927 CONECT 2975 2933 CONECT 2976 2936 CONECT 2977 2936 CONECT 2978 2936 CONECT 2979 2938 CONECT 2980 2939 CONECT 2981 2941 CONECT 2982 2941 CONECT 2983 2942 CONECT 2984 2942 CONECT 2985 2943 CONECT 2986 2944 CONECT 2987 2945 CONECT 2988 2947 CONECT 2989 2947 CONECT 2990 2947 CONECT 2991 2948 CONECT 2992 2951 CONECT 2993 2954 CONECT 2994 2954 CONECT 2995 2954 CONECT 2996 2956 CONECT 2997 2956 CONECT 2998 2956 CONECT 2999 2957 CONECT 3000 2959 CONECT 3001 2959 CONECT 3002 1998 2440 CONECT 3007 2524 MASTER 363 0 9 0 0 0 0 6 1893 8 496 8 END