data_9T9D # _entry.id 9T9D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.416 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9T9D pdb_00009t9d 10.2210/pdb9t9d/pdb WWPDB D_1292150696 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-07-29 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9T9D _pdbx_database_status.recvd_initial_deposition_date 2025-11-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email cftornero@cib.csic.es _pdbx_contact_author.name_first Carlos _pdbx_contact_author.name_last Fernandez-Tornero _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5097-731X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Darriere, T.' 1 0000-0002-1655-525X 'Ruiz, F.M.' 2 0000-0002-0385-7777 'Cuevas, C.' 3 ? 'Fernandez-Tornero, C.' 4 0000-0001-5097-731X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'The structures of ecteinascidins bound to DNA shed light on their mechanism of action' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Darriere, T.' 1 0000-0002-1655-525X primary 'Ruiz, F.M.' 2 0000-0002-0385-7777 primary 'Cuevas, C.' 3 ? primary 'Fernandez-Tornero, C.' 4 0000-0001-5097-731X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*GP*AP*GP*GP*CP*CP*TP*CP*T)-3') ; 3045.005 4 ? ? ? ? 2 non-polymer syn ;[(1R,2R,3R,11S,12S,14R,26R)-5,12-dihydroxy-3'-(hydroxymethyl)-6-methoxy-7,21,30-trimethyl-27-oxospiro[17,19,28-trioxa-24-thia-13,30-diazaheptacyclo[12.9.6.13,11.02,13.04,9.015,23.016,20]triaconta-4(9),5,7,15,20,22-hexaene-26,1'-3,4-dihydro-2H-[1]benzofuro[2,3-c]pyridine]-22-yl] acetate ; 785.859 6 ? ? ? ? 3 water nat water 18.015 32 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DG)(DA)(DG)(DG)(DC)(DC)(DT)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can AGAGGCCTCT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;[(1R,2R,3R,11S,12S,14R,26R)-5,12-dihydroxy-3'-(hydroxymethyl)-6-methoxy-7,21,30-trimethyl-27-oxospiro[17,19,28-trioxa-24-thia-13,30-diazaheptacyclo[12.9.6.13,11.02,13.04,9.015,23.016,20]triaconta-4(9),5,7,15,20,22-hexaene-26,1'-3,4-dihydro-2H-[1]benzofuro[2,3-c]pyridine]-22-yl] acetate ; A1JUN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DC n 1 7 DC n 1 8 DT n 1 9 DC n 1 10 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'DNA molecule' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2853804 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1JUN non-polymer . ;[(1R,2R,3R,11S,12S,14R,26R)-5,12-dihydroxy-3'-(hydroxymethyl)-6-methoxy-7,21,30-trimethyl-27-oxospiro[17,19,28-trioxa-24-thia-13,30-diazaheptacyclo[12.9.6.13,11.02,13.04,9.015,23.016,20]triaconta-4(9),5,7,15,20,22-hexaene-26,1'-3,4-dihydro-2H-[1]benzofuro[2,3-c]pyridine]-22-yl] acetate ; PM54 'C41 H43 N3 O11 S' 785.859 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DT 10 10 10 DT DT A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DA 3 3 3 DA DA B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DC 6 6 6 DC DC B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DT 8 8 8 DT DT B . n B 1 9 DC 9 9 9 DC DC B . n B 1 10 DT 10 10 10 DT DT B . n C 1 1 DA 1 1 1 DA DA C . n C 1 2 DG 2 2 2 DG DG C . n C 1 3 DA 3 3 3 DA DA C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DG 5 5 5 DG DG C . n C 1 6 DC 6 6 6 DC DC C . n C 1 7 DC 7 7 7 DC DC C . n C 1 8 DT 8 8 8 DT DT C . n C 1 9 DC 9 9 9 DC DC C . n C 1 10 DT 10 10 10 DT DT C . n D 1 1 DA 1 1 1 DA DA D . n D 1 2 DG 2 2 2 DG DG D . n D 1 3 DA 3 3 3 DA DA D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DG 5 5 5 DG DG D . n D 1 6 DC 6 6 6 DC DC D . n D 1 7 DC 7 7 7 DC DC D . n D 1 8 DT 8 8 8 DT DT D . n D 1 9 DC 9 9 9 DC DC D . n D 1 10 DT 10 10 10 DT DT D . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1JUN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1JUN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 A1JUN 1 101 104 A1JUN P54 A . F 2 A1JUN 1 102 105 A1JUN P54 A . G 2 A1JUN 1 101 106 A1JUN P54 B . H 2 A1JUN 1 101 104 A1JUN P54 C . I 2 A1JUN 1 102 105 A1JUN P54 C . J 2 A1JUN 1 101 106 A1JUN P54 D . K 3 HOH 1 201 5 HOH HOH A . K 3 HOH 2 202 8 HOH HOH A . K 3 HOH 3 203 16 HOH HOH A . K 3 HOH 4 204 15 HOH HOH A . K 3 HOH 5 205 17 HOH HOH A . K 3 HOH 6 206 14 HOH HOH A . K 3 HOH 7 207 31 HOH HOH A . K 3 HOH 8 208 18 HOH HOH A . L 3 HOH 1 201 20 HOH HOH B . L 3 HOH 2 202 6 HOH HOH B . L 3 HOH 3 203 19 HOH HOH B . L 3 HOH 4 204 1 HOH HOH B . L 3 HOH 5 205 21 HOH HOH B . M 3 HOH 1 201 7 HOH HOH C . M 3 HOH 2 202 28 HOH HOH C . M 3 HOH 3 203 25 HOH HOH C . M 3 HOH 4 204 32 HOH HOH C . M 3 HOH 5 205 3 HOH HOH C . M 3 HOH 6 206 23 HOH HOH C . M 3 HOH 7 207 26 HOH HOH C . M 3 HOH 8 208 27 HOH HOH C . N 3 HOH 1 201 24 HOH HOH D . N 3 HOH 2 202 9 HOH HOH D . N 3 HOH 3 203 12 HOH HOH D . N 3 HOH 4 204 22 HOH HOH D . N 3 HOH 5 205 29 HOH HOH D . N 3 HOH 6 206 30 HOH HOH D . N 3 HOH 7 207 10 HOH HOH D . N 3 HOH 8 208 13 HOH HOH D . N 3 HOH 9 209 2 HOH HOH D . N 3 HOH 10 210 11 HOH HOH D . N 3 HOH 11 211 4 HOH HOH D . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? '5.8.0430 (refmacat 0.4.105)' ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 # _cell.angle_alpha 90 _cell.angle_alpha_esd ? _cell.angle_beta 90 _cell.angle_beta_esd ? _cell.angle_gamma 90 _cell.angle_gamma_esd ? _cell.entry_id 9T9D _cell.details ? _cell.formula_units_Z ? _cell.length_a 92.43 _cell.length_a_esd ? _cell.length_b 126.688 _cell.length_b_esd ? _cell.length_c 43.387 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 32 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9T9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9T9D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25% polyethylene glycol 400, 50 mM MES pH 6.5, 50 mM KCl, 100 mM LiCl and 12 mM spermine' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-07-04 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9793 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALBA BEAMLINE XALOC' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline XALOC _diffrn_source.pdbx_synchrotron_site ALBA # _reflns.B_iso_Wilson_estimate 50.9 _reflns.entry_id 9T9D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.1 _reflns.d_resolution_low 46.258 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15329 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.050 _reflns.pdbx_Rpim_I_all 0.027 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.042 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.1 _reflns_shell.d_res_low 2.2 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1256 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.262 _reflns_shell.pdbx_Rpim_I_all 0.774 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.588 _reflns_shell.pdbx_CC_star 0.796 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.988 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] -2.323 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] -0.000 _refine.aniso_B[2][2] 5.060 _refine.aniso_B[2][3] 0.000 _refine.aniso_B[3][3] -2.736 _refine.B_iso_max ? _refine.B_iso_mean 59.041 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.953 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9T9D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.100 _refine.ls_d_res_low 46.258 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15328 _refine.ls_number_reflns_R_free 748 _refine.ls_number_reflns_R_work 14580 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.909 _refine.ls_percent_reflns_R_free 4.880 _refine.ls_R_factor_all 0.245 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2802 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2427 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.178 _refine.pdbx_overall_ESU_R_Free 0.170 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 8.368 _refine.overall_SU_ML 0.193 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 46.258 _refine_hist.number_atoms_solvent 32 _refine_hist.number_atoms_total 1172 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 808 _refine_hist.pdbx_number_atoms_ligand 332 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 0.011 1294 ? r_bond_refined_d ? ? ? 'X-RAY DIFFRACTION' ? 0.002 0.017 600 ? r_bond_other_d ? ? ? 'X-RAY DIFFRACTION' ? 2.434 1.932 2010 ? r_angle_refined_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.596 1.591 1450 ? r_angle_other_deg ? ? ? 'X-RAY DIFFRACTION' ? 50.997 12.500 24 ? r_dihedral_angle_2_deg ? ? ? 'X-RAY DIFFRACTION' ? 4.507 5.000 32 ? r_dihedral_angle_other_2_deg ? ? ? 'X-RAY DIFFRACTION' ? 0.089 0.200 216 ? r_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.013 0.020 808 ? r_gen_planes_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 174 ? r_gen_planes_other ? ? ? 'X-RAY DIFFRACTION' ? 0.287 0.200 230 ? r_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.223 0.200 707 ? r_symmetry_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 0.266 0.200 612 ? r_nbtor_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.098 0.200 394 ? r_symmetry_nbtor_other ? ? ? 'X-RAY DIFFRACTION' ? 0.214 0.200 46 ? r_xyhbond_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.204 0.200 98 ? r_symmetry_nbd_refined ? ? ? 'X-RAY DIFFRACTION' ? 0.225 0.200 84 ? r_nbd_other ? ? ? 'X-RAY DIFFRACTION' ? 6.183 6.181 1294 ? r_scbond_it ? ? ? 'X-RAY DIFFRACTION' ? 6.183 6.181 1295 ? r_scbond_other ? ? ? 'X-RAY DIFFRACTION' ? 8.579 11.242 2010 ? r_scangle_it ? ? ? 'X-RAY DIFFRACTION' ? 8.577 11.241 2011 ? r_scangle_other ? ? ? 'X-RAY DIFFRACTION' ? 10.412 75.581 2134 ? r_lrange_it ? ? ? 'X-RAY DIFFRACTION' ? 10.416 75.590 2133 ? r_lrange_other ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.100 2.154 1119 . 66 1050 99.7319 . 0.473 . . 0.467 . . . . . 0.463 . . . . . 20 . 0.646 0.555 0.578 'X-RAY DIFFRACTION' 2.154 2.213 1079 . 46 1032 99.9073 . 0.442 . . 0.441 . . . . . 0.424 . . . . . 20 . 0.818 0.747 0.452 'X-RAY DIFFRACTION' 2.213 2.277 1060 . 47 1013 100.0000 . 0.417 . . 0.416 . . . . . 0.385 . . . . . 20 . 0.860 0.843 0.443 'X-RAY DIFFRACTION' 2.277 2.347 1025 . 52 973 100.0000 . 0.416 . . 0.409 . . . . . 0.371 . . . . . 20 . 0.877 0.780 0.549 'X-RAY DIFFRACTION' 2.347 2.424 1000 . 44 956 100.0000 . 0.406 . . 0.407 . . . . . 0.367 . . . . . 20 . 0.903 0.918 0.374 'X-RAY DIFFRACTION' 2.424 2.509 952 . 49 903 100.0000 . 0.355 . . 0.350 . . . . . 0.313 . . . . . 20 . 0.924 0.896 0.452 'X-RAY DIFFRACTION' 2.509 2.603 937 . 47 890 100.0000 . 0.343 . . 0.335 . . . . . 0.307 . . . . . 20 . 0.933 0.875 0.511 'X-RAY DIFFRACTION' 2.603 2.709 912 . 52 860 100.0000 . 0.321 . . 0.315 . . . . . 0.290 . . . . . 20 . 0.936 0.908 0.415 'X-RAY DIFFRACTION' 2.709 2.829 843 . 44 799 100.0000 . 0.336 . . 0.335 . . . . . 0.306 . . . . . 20 . 0.921 0.893 0.364 'X-RAY DIFFRACTION' 2.829 2.967 831 . 43 788 100.0000 . 0.346 . . 0.345 . . . . . 0.326 . . . . . 20 . 0.915 0.904 0.351 'X-RAY DIFFRACTION' 2.967 3.127 791 . 34 757 100.0000 . 0.317 . . 0.312 . . . . . 0.299 . . . . . 20 . 0.934 0.862 0.429 'X-RAY DIFFRACTION' 3.127 3.315 759 . 38 719 99.7365 . 0.268 . . 0.268 . . . . . 0.272 . . . . . 20 . 0.965 0.959 0.272 'X-RAY DIFFRACTION' 3.315 3.543 702 . 30 671 99.8576 . 0.221 . . 0.221 . . . . . 0.230 . . . . . 20 . 0.979 0.985 0.211 'X-RAY DIFFRACTION' 3.543 3.825 652 . 29 623 100.0000 . 0.216 . . 0.215 . . . . . 0.225 . . . . . 20 . 0.976 0.969 0.248 'X-RAY DIFFRACTION' 3.825 4.187 620 . 25 595 100.0000 . 0.197 . . 0.193 . . . . . 0.202 . . . . . 20 . 0.976 0.949 0.280 'X-RAY DIFFRACTION' 4.187 4.677 564 . 34 529 99.8227 . 0.172 . . 0.168 . . . . . 0.190 . . . . . 20 . 0.983 0.974 0.224 'X-RAY DIFFRACTION' 4.677 5.391 494 . 19 475 100.0000 . 0.158 . . 0.157 . . . . . 0.174 . . . . . 20 . 0.985 0.980 0.177 'X-RAY DIFFRACTION' 5.391 6.580 433 . 17 415 99.7691 . 0.154 . . 0.153 . . . . . 0.167 . . . . . 20 . 0.986 0.980 0.182 'X-RAY DIFFRACTION' 6.580 9.213 345 . 21 323 99.7101 . 0.191 . . 0.189 . . . . . 0.220 . . . . . 20 . 0.980 0.976 0.221 'X-RAY DIFFRACTION' 9.213 46.258 222 . 11 209 99.0991 . 0.263 . . 0.264 . . . . . 0.310 . . . . . 20 . 0.951 0.980 0.238 # _struct.entry_id 9T9D _struct.title 'Crystal structure of PM54 bound to 10-mer duplex DNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9T9D _struct_keywords.text 'ecteinascidin, DNA duplex, covalent bond, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9T9D _struct_ref.pdbx_db_accession 9T9D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9T9D A 1 ? 10 ? 9T9D 1 ? 10 ? 1 10 2 1 9T9D B 1 ? 10 ? 9T9D 1 ? 10 ? 1 10 3 1 9T9D C 1 ? 10 ? 9T9D 1 ? 10 ? 1 10 4 1 9T9D D 1 ? 10 ? 9T9D 1 ? 10 ? 1 10 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,K,L 2 1 C,D,H,I,J,M,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? A DG 4 N2 ? ? ? 1_555 E A1JUN . C38 ? ? A DG 4 A A1JUN 101 1_555 ? ? ? ? ? ? ? 1.453 ? ? covale2 covale none ? B DG 4 N2 ? ? ? 1_555 G A1JUN . C38 ? ? B DG 4 B A1JUN 101 1_555 ? ? ? ? ? ? ? 1.448 ? ? covale3 covale none ? C DG 4 N2 ? ? ? 1_555 I A1JUN . C38 ? ? C DG 4 C A1JUN 102 1_555 ? ? ? ? ? ? ? 1.454 ? ? covale4 covale none ? D DG 4 N2 ? ? ? 1_555 J A1JUN . C38 ? ? D DG 4 D A1JUN 101 1_555 ? ? ? ? ? ? ? 1.456 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 1 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 1 B DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 2 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 3 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 4 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 6 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 7 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 9 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 10 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 10 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 10 N3 ? ? C DA 1 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 10 O4 ? ? C DA 1 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DC 9 N3 ? ? C DG 2 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DC 9 O2 ? ? C DG 2 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DG 2 O6 ? ? ? 1_555 D DC 9 N4 ? ? C DG 2 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DA 3 N1 ? ? ? 1_555 D DT 8 N3 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DA 3 N6 ? ? ? 1_555 D DT 8 O4 ? ? C DA 3 D DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 4 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DC 6 N3 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DC 6 O2 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 5 O6 ? ? ? 1_555 D DC 6 N4 ? ? C DG 5 D DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DC 6 N3 ? ? ? 1_555 D DG 5 N1 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 6 N4 ? ? ? 1_555 D DG 5 O6 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 6 O2 ? ? ? 1_555 D DG 5 N2 ? ? C DC 6 D DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 7 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C DT 8 N3 ? ? ? 1_555 D DA 3 N1 ? ? C DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DT 8 O4 ? ? ? 1_555 D DA 3 N6 ? ? C DT 8 D DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DC 9 N3 ? ? ? 1_555 D DG 2 N1 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DC 9 N4 ? ? ? 1_555 D DG 2 O6 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DC 9 O2 ? ? ? 1_555 D DG 2 N2 ? ? C DC 9 D DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C DT 10 N3 ? ? ? 1_555 D DA 1 N1 ? ? C DT 10 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C DT 10 O4 ? ? ? 1_555 D DA 1 N6 ? ? C DT 10 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9T9D _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 D DG 5 ? ? O D HOH 201 ? ? 2.03 2 1 N7 C DA 1 ? ? O C HOH 201 ? ? 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.68 108.30 2.38 0.30 N 2 1 "O4'" B DG 5 ? ? "C1'" B DG 5 ? ? N9 B DG 5 ? ? 113.69 108.30 5.39 0.30 N 3 1 "O3'" C DC 6 ? ? P C DC 7 ? ? OP1 C DC 7 ? ? 117.90 110.50 7.40 1.10 Y 4 1 "O5'" C DC 7 ? ? P C DC 7 ? ? OP2 C DC 7 ? ? 99.91 105.70 -5.79 0.90 N 5 1 "O5'" D DG 2 ? ? P D DG 2 ? ? OP1 D DG 2 ? ? 99.51 105.70 -6.19 0.90 N 6 1 "O3'" D DG 2 ? ? P D DA 3 ? ? "O5'" D DA 3 ? ? 92.08 104.00 -11.92 1.90 Y 7 1 "O4'" D DG 5 ? ? "C1'" D DG 5 ? ? N9 D DG 5 ? ? 112.96 108.30 4.66 0.30 N 8 1 "O4'" D DC 6 ? ? "C4'" D DC 6 ? ? "C3'" D DC 6 ? ? 102.02 104.50 -2.48 0.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1JUN C1 C N N 1 A1JUN C2 C Y N 2 A1JUN C3 C Y N 3 A1JUN C6 C Y N 4 A1JUN C8 C Y N 5 A1JUN C12 C N N 6 A1JUN C13 C N R 7 A1JUN C14 C N R 8 A1JUN C15 C N N 9 A1JUN C16 C N N 10 A1JUN C17 C Y N 11 A1JUN C18 C Y N 12 A1JUN C19 C Y N 13 A1JUN C20 C Y N 14 A1JUN C21 C Y N 15 A1JUN C22 C Y N 16 A1JUN C23 C Y N 17 A1JUN C24 C Y N 18 A1JUN O1 O N N 19 A1JUN C4 C N N 20 A1JUN C5 C Y N 21 A1JUN C7 C Y N 22 A1JUN O2 O N N 23 A1JUN C9 C N R 24 A1JUN C10 C N R 25 A1JUN C11 C N R 26 A1JUN S1 S N N 27 A1JUN N1 N N N 28 A1JUN O3 O N N 29 A1JUN O4 O Y N 30 A1JUN C25 C N N 31 A1JUN O5 O N N 32 A1JUN O6 O N N 33 A1JUN C26 C N N 34 A1JUN C27 C N R 35 A1JUN C28 C Y N 36 A1JUN C29 C Y N 37 A1JUN C30 C Y N 38 A1JUN C31 C Y N 39 A1JUN C32 C N N 40 A1JUN C33 C Y N 41 A1JUN O7 O N N 42 A1JUN C34 C N N 43 A1JUN C35 C N N 44 A1JUN O8 O N N 45 A1JUN C36 C Y N 46 A1JUN O9 O N N 47 A1JUN C37 C N N 48 A1JUN O10 O N N 49 A1JUN N2 N N N 50 A1JUN C38 C N S 51 A1JUN C39 C N S 52 A1JUN C40 C N N 53 A1JUN N3 N N N 54 A1JUN C41 C N N 55 A1JUN H2 H N N 56 A1JUN H3 H N N 57 A1JUN H1 H N N 58 A1JUN H12 H N N 59 A1JUN H13 H N N 60 A1JUN H15 H N N 61 A1JUN H17 H N N 62 A1JUN H16 H N N 63 A1JUN H19 H N N 64 A1JUN H20 H N N 65 A1JUN H21 H N N 66 A1JUN H22 H N N 67 A1JUN H23 H N N 68 A1JUN H24 H N N 69 A1JUN H5 H N N 70 A1JUN H6 H N N 71 A1JUN H4 H N N 72 A1JUN H7 H N N 73 A1JUN H8 H N N 74 A1JUN H9 H N N 75 A1JUN H10 H N N 76 A1JUN H11 H N N 77 A1JUN H37 H N N 78 A1JUN H18 H N N 79 A1JUN H26 H N N 80 A1JUN H25 H N N 81 A1JUN H27 H N N 82 A1JUN H28 H N N 83 A1JUN H29 H N N 84 A1JUN H30 H N N 85 A1JUN H33 H N N 86 A1JUN H31 H N N 87 A1JUN H32 H N N 88 A1JUN H35 H N N 89 A1JUN H34 H N N 90 A1JUN H36 H N N 91 A1JUN H38 H N N 92 A1JUN H40 H N N 93 A1JUN H39 H N N 94 A1JUN H43 H N N 95 A1JUN H41 H N N 96 A1JUN H42 H N N 97 A1JUN O11 O N N 98 A1JUN H14 H N N 99 DA OP3 O N N 100 DA P P N N 101 DA OP1 O N N 102 DA OP2 O N N 103 DA "O5'" O N N 104 DA "C5'" C N N 105 DA "C4'" C N R 106 DA "O4'" O N N 107 DA "C3'" C N S 108 DA "O3'" O N N 109 DA "C2'" C N N 110 DA "C1'" C N R 111 DA N9 N Y N 112 DA C8 C Y N 113 DA N7 N Y N 114 DA C5 C Y N 115 DA C6 C Y N 116 DA N6 N N N 117 DA N1 N Y N 118 DA C2 C Y N 119 DA N3 N Y N 120 DA C4 C Y N 121 DA HOP3 H N N 122 DA HOP2 H N N 123 DA "H5'" H N N 124 DA "H5''" H N N 125 DA "H4'" H N N 126 DA "H3'" H N N 127 DA "HO3'" H N N 128 DA "H2'" H N N 129 DA "H2''" H N N 130 DA "H1'" H N N 131 DA H8 H N N 132 DA H61 H N N 133 DA H62 H N N 134 DA H2 H N N 135 DC OP3 O N N 136 DC P P N N 137 DC OP1 O N N 138 DC OP2 O N N 139 DC "O5'" O N N 140 DC "C5'" C N N 141 DC "C4'" C N R 142 DC "O4'" O N N 143 DC "C3'" C N S 144 DC "O3'" O N N 145 DC "C2'" C N N 146 DC "C1'" C N R 147 DC N1 N N N 148 DC C2 C N N 149 DC O2 O N N 150 DC N3 N N N 151 DC C4 C N N 152 DC N4 N N N 153 DC C5 C N N 154 DC C6 C N N 155 DC HOP3 H N N 156 DC HOP2 H N N 157 DC "H5'" H N N 158 DC "H5''" H N N 159 DC "H4'" H N N 160 DC "H3'" H N N 161 DC "HO3'" H N N 162 DC "H2'" H N N 163 DC "H2''" H N N 164 DC "H1'" H N N 165 DC H41 H N N 166 DC H42 H N N 167 DC H5 H N N 168 DC H6 H N N 169 DG OP3 O N N 170 DG P P N N 171 DG OP1 O N N 172 DG OP2 O N N 173 DG "O5'" O N N 174 DG "C5'" C N N 175 DG "C4'" C N R 176 DG "O4'" O N N 177 DG "C3'" C N S 178 DG "O3'" O N N 179 DG "C2'" C N N 180 DG "C1'" C N R 181 DG N9 N Y N 182 DG C8 C Y N 183 DG N7 N Y N 184 DG C5 C Y N 185 DG C6 C N N 186 DG O6 O N N 187 DG N1 N N N 188 DG C2 C N N 189 DG N2 N N N 190 DG N3 N N N 191 DG C4 C Y N 192 DG HOP3 H N N 193 DG HOP2 H N N 194 DG "H5'" H N N 195 DG "H5''" H N N 196 DG "H4'" H N N 197 DG "H3'" H N N 198 DG "HO3'" H N N 199 DG "H2'" H N N 200 DG "H2''" H N N 201 DG "H1'" H N N 202 DG H8 H N N 203 DG H1 H N N 204 DG H21 H N N 205 DG H22 H N N 206 DT OP3 O N N 207 DT P P N N 208 DT OP1 O N N 209 DT OP2 O N N 210 DT "O5'" O N N 211 DT "C5'" C N N 212 DT "C4'" C N R 213 DT "O4'" O N N 214 DT "C3'" C N S 215 DT "O3'" O N N 216 DT "C2'" C N N 217 DT "C1'" C N R 218 DT N1 N N N 219 DT C2 C N N 220 DT O2 O N N 221 DT N3 N N N 222 DT C4 C N N 223 DT O4 O N N 224 DT C5 C N N 225 DT C7 C N N 226 DT C6 C N N 227 DT HOP3 H N N 228 DT HOP2 H N N 229 DT "H5'" H N N 230 DT "H5''" H N N 231 DT "H4'" H N N 232 DT "H3'" H N N 233 DT "HO3'" H N N 234 DT "H2'" H N N 235 DT "H2''" H N N 236 DT "H1'" H N N 237 DT H3 H N N 238 DT H71 H N N 239 DT H72 H N N 240 DT H73 H N N 241 DT H6 H N N 242 HOH O O N N 243 HOH H1 H N N 244 HOH H2 H N N 245 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1JUN C1 O1 sing N N 1 A1JUN C4 C3 sing N N 2 A1JUN C41 N3 sing N N 3 A1JUN O1 C2 sing N N 4 A1JUN C3 C2 doub Y N 5 A1JUN C3 C5 sing Y N 6 A1JUN C2 C8 sing Y N 7 A1JUN C5 C6 doub Y N 8 A1JUN C8 O2 sing N N 9 A1JUN C8 C7 doub Y N 10 A1JUN C6 C7 sing Y N 11 A1JUN C6 C40 sing N N 12 A1JUN N3 C39 sing N N 13 A1JUN N3 C9 sing N N 14 A1JUN C7 C9 sing N N 15 A1JUN C40 C39 sing N N 16 A1JUN C39 C38 sing N N 17 A1JUN C9 C10 sing N N 18 A1JUN O3 C15 sing N N 19 A1JUN C15 C14 sing N N 20 A1JUN C38 N2 sing N N 21 A1JUN C10 N2 sing N N 22 A1JUN C10 C11 sing N N 23 A1JUN N2 C27 sing N N 24 A1JUN S1 C11 sing N N 25 A1JUN S1 C12 sing N N 26 A1JUN C14 N1 sing N N 27 A1JUN C14 C16 sing N N 28 A1JUN N1 C13 sing N N 29 A1JUN O5 C25 doub N N 30 A1JUN C11 C36 sing N N 31 A1JUN C25 C13 sing N N 32 A1JUN C25 O6 sing N N 33 A1JUN O8 C34 doub N N 34 A1JUN C13 C12 sing N N 35 A1JUN C13 C18 sing N N 36 A1JUN C16 C17 sing N N 37 A1JUN C27 C26 sing N N 38 A1JUN C27 C28 sing N N 39 A1JUN C36 C28 doub Y N 40 A1JUN C36 C33 sing Y N 41 A1JUN O7 C34 sing N N 42 A1JUN O7 C33 sing N N 43 A1JUN C34 C35 sing N N 44 A1JUN C26 O6 sing N N 45 A1JUN C28 C29 sing Y N 46 A1JUN C18 C17 doub Y N 47 A1JUN C18 O4 sing Y N 48 A1JUN C33 C31 doub Y N 49 A1JUN C17 C24 sing Y N 50 A1JUN C29 O10 sing N N 51 A1JUN C29 C30 doub Y N 52 A1JUN O4 C19 sing Y N 53 A1JUN C24 C23 doub Y N 54 A1JUN C24 C19 sing Y N 55 A1JUN C31 C30 sing Y N 56 A1JUN C31 C32 sing N N 57 A1JUN O10 C37 sing N N 58 A1JUN C30 O9 sing N N 59 A1JUN C23 C22 sing Y N 60 A1JUN C19 C20 doub Y N 61 A1JUN C37 O9 sing N N 62 A1JUN C20 C21 sing Y N 63 A1JUN C22 C21 doub Y N 64 A1JUN C1 H2 sing N N 65 A1JUN C1 H3 sing N N 66 A1JUN C1 H1 sing N N 67 A1JUN C12 H12 sing N N 68 A1JUN C12 H13 sing N N 69 A1JUN C14 H15 sing N N 70 A1JUN C15 H17 sing N N 71 A1JUN C15 H16 sing N N 72 A1JUN C16 H19 sing N N 73 A1JUN C16 H20 sing N N 74 A1JUN C20 H21 sing N N 75 A1JUN C21 H22 sing N N 76 A1JUN C22 H23 sing N N 77 A1JUN C23 H24 sing N N 78 A1JUN C4 H5 sing N N 79 A1JUN C4 H6 sing N N 80 A1JUN C4 H4 sing N N 81 A1JUN C5 H7 sing N N 82 A1JUN O2 H8 sing N N 83 A1JUN C9 H9 sing N N 84 A1JUN C10 H10 sing N N 85 A1JUN C11 H11 sing N N 86 A1JUN N1 H37 sing N N 87 A1JUN O3 H18 sing N N 88 A1JUN C26 H26 sing N N 89 A1JUN C26 H25 sing N N 90 A1JUN C27 H27 sing N N 91 A1JUN C32 H28 sing N N 92 A1JUN C32 H29 sing N N 93 A1JUN C32 H30 sing N N 94 A1JUN C35 H33 sing N N 95 A1JUN C35 H31 sing N N 96 A1JUN C35 H32 sing N N 97 A1JUN C37 H35 sing N N 98 A1JUN C37 H34 sing N N 99 A1JUN C38 H36 sing N N 100 A1JUN C39 H38 sing N N 101 A1JUN C40 H40 sing N N 102 A1JUN C40 H39 sing N N 103 A1JUN C41 H43 sing N N 104 A1JUN C41 H41 sing N N 105 A1JUN C41 H42 sing N N 106 A1JUN C38 O11 sing N N 107 A1JUN O11 H14 sing N N 108 DA OP3 P sing N N 109 DA OP3 HOP3 sing N N 110 DA P OP1 doub N N 111 DA P OP2 sing N N 112 DA P "O5'" sing N N 113 DA OP2 HOP2 sing N N 114 DA "O5'" "C5'" sing N N 115 DA "C5'" "C4'" sing N N 116 DA "C5'" "H5'" sing N N 117 DA "C5'" "H5''" sing N N 118 DA "C4'" "O4'" sing N N 119 DA "C4'" "C3'" sing N N 120 DA "C4'" "H4'" sing N N 121 DA "O4'" "C1'" sing N N 122 DA "C3'" "O3'" sing N N 123 DA "C3'" "C2'" sing N N 124 DA "C3'" "H3'" sing N N 125 DA "O3'" "HO3'" sing N N 126 DA "C2'" "C1'" sing N N 127 DA "C2'" "H2'" sing N N 128 DA "C2'" "H2''" sing N N 129 DA "C1'" N9 sing N N 130 DA "C1'" "H1'" sing N N 131 DA N9 C8 sing Y N 132 DA N9 C4 sing Y N 133 DA C8 N7 doub Y N 134 DA C8 H8 sing N N 135 DA N7 C5 sing Y N 136 DA C5 C6 sing Y N 137 DA C5 C4 doub Y N 138 DA C6 N6 sing N N 139 DA C6 N1 doub Y N 140 DA N6 H61 sing N N 141 DA N6 H62 sing N N 142 DA N1 C2 sing Y N 143 DA C2 N3 doub Y N 144 DA C2 H2 sing N N 145 DA N3 C4 sing Y N 146 DC OP3 P sing N N 147 DC OP3 HOP3 sing N N 148 DC P OP1 doub N N 149 DC P OP2 sing N N 150 DC P "O5'" sing N N 151 DC OP2 HOP2 sing N N 152 DC "O5'" "C5'" sing N N 153 DC "C5'" "C4'" sing N N 154 DC "C5'" "H5'" sing N N 155 DC "C5'" "H5''" sing N N 156 DC "C4'" "O4'" sing N N 157 DC "C4'" "C3'" sing N N 158 DC "C4'" "H4'" sing N N 159 DC "O4'" "C1'" sing N N 160 DC "C3'" "O3'" sing N N 161 DC "C3'" "C2'" sing N N 162 DC "C3'" "H3'" sing N N 163 DC "O3'" "HO3'" sing N N 164 DC "C2'" "C1'" sing N N 165 DC "C2'" "H2'" sing N N 166 DC "C2'" "H2''" sing N N 167 DC "C1'" N1 sing N N 168 DC "C1'" "H1'" sing N N 169 DC N1 C2 sing N N 170 DC N1 C6 sing N N 171 DC C2 O2 doub N N 172 DC C2 N3 sing N N 173 DC N3 C4 doub N N 174 DC C4 N4 sing N N 175 DC C4 C5 sing N N 176 DC N4 H41 sing N N 177 DC N4 H42 sing N N 178 DC C5 C6 doub N N 179 DC C5 H5 sing N N 180 DC C6 H6 sing N N 181 DG OP3 P sing N N 182 DG OP3 HOP3 sing N N 183 DG P OP1 doub N N 184 DG P OP2 sing N N 185 DG P "O5'" sing N N 186 DG OP2 HOP2 sing N N 187 DG "O5'" "C5'" sing N N 188 DG "C5'" "C4'" sing N N 189 DG "C5'" "H5'" sing N N 190 DG "C5'" "H5''" sing N N 191 DG "C4'" "O4'" sing N N 192 DG "C4'" "C3'" sing N N 193 DG "C4'" "H4'" sing N N 194 DG "O4'" "C1'" sing N N 195 DG "C3'" "O3'" sing N N 196 DG "C3'" "C2'" sing N N 197 DG "C3'" "H3'" sing N N 198 DG "O3'" "HO3'" sing N N 199 DG "C2'" "C1'" sing N N 200 DG "C2'" "H2'" sing N N 201 DG "C2'" "H2''" sing N N 202 DG "C1'" N9 sing N N 203 DG "C1'" "H1'" sing N N 204 DG N9 C8 sing Y N 205 DG N9 C4 sing Y N 206 DG C8 N7 doub Y N 207 DG C8 H8 sing N N 208 DG N7 C5 sing Y N 209 DG C5 C6 sing N N 210 DG C5 C4 doub Y N 211 DG C6 O6 doub N N 212 DG C6 N1 sing N N 213 DG N1 C2 sing N N 214 DG N1 H1 sing N N 215 DG C2 N2 sing N N 216 DG C2 N3 doub N N 217 DG N2 H21 sing N N 218 DG N2 H22 sing N N 219 DG N3 C4 sing N N 220 DT OP3 P sing N N 221 DT OP3 HOP3 sing N N 222 DT P OP1 doub N N 223 DT P OP2 sing N N 224 DT P "O5'" sing N N 225 DT OP2 HOP2 sing N N 226 DT "O5'" "C5'" sing N N 227 DT "C5'" "C4'" sing N N 228 DT "C5'" "H5'" sing N N 229 DT "C5'" "H5''" sing N N 230 DT "C4'" "O4'" sing N N 231 DT "C4'" "C3'" sing N N 232 DT "C4'" "H4'" sing N N 233 DT "O4'" "C1'" sing N N 234 DT "C3'" "O3'" sing N N 235 DT "C3'" "C2'" sing N N 236 DT "C3'" "H3'" sing N N 237 DT "O3'" "HO3'" sing N N 238 DT "C2'" "C1'" sing N N 239 DT "C2'" "H2'" sing N N 240 DT "C2'" "H2''" sing N N 241 DT "C1'" N1 sing N N 242 DT "C1'" "H1'" sing N N 243 DT N1 C2 sing N N 244 DT N1 C6 sing N N 245 DT C2 O2 doub N N 246 DT C2 N3 sing N N 247 DT N3 C4 sing N N 248 DT N3 H3 sing N N 249 DT C4 O4 doub N N 250 DT C4 C5 sing N N 251 DT C5 C7 sing N N 252 DT C5 C6 doub N N 253 DT C7 H71 sing N N 254 DT C7 H72 sing N N 255 DT C7 H73 sing N N 256 DT C6 H6 sing N N 257 HOH O H1 sing N N 258 HOH O H2 sing N N 259 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9T9D 'double helix' 9T9D 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DA 1 1_555 A DT 10 1_555 -0.268 -0.379 0.175 4.794 0.404 -1.676 1 B_DA1:DT10_A B 1 ? A 10 ? 20 1 1 B DG 2 1_555 A DC 9 1_555 -0.484 -0.091 0.099 4.661 -5.273 3.691 2 B_DG2:DC9_A B 2 ? A 9 ? 19 1 1 B DA 3 1_555 A DT 8 1_555 0.125 -0.076 -0.089 -6.657 -6.929 -3.999 3 B_DA3:DT8_A B 3 ? A 8 ? 20 1 1 B DG 4 1_555 A DC 7 1_555 -0.129 -0.316 0.418 10.501 -2.674 -2.346 4 B_DG4:DC7_A B 4 ? A 7 ? 19 1 1 B DG 5 1_555 A DC 6 1_555 0.058 0.181 0.228 7.468 -13.183 10.464 5 B_DG5:DC6_A B 5 ? A 6 ? 19 1 1 B DC 6 1_555 A DG 5 1_555 -0.120 -0.101 0.130 -2.519 -14.066 1.773 6 B_DC6:DG5_A B 6 ? A 5 ? 19 1 1 B DC 7 1_555 A DG 4 1_555 0.273 -0.318 0.531 -5.752 -4.794 -0.738 7 B_DC7:DG4_A B 7 ? A 4 ? 19 1 1 B DT 8 1_555 A DA 3 1_555 -0.067 -0.190 -0.089 4.441 -8.625 -2.719 8 B_DT8:DA3_A B 8 ? A 3 ? 20 1 1 B DC 9 1_555 A DG 2 1_555 0.375 -0.178 0.244 -0.707 -9.100 -0.219 9 B_DC9:DG2_A B 9 ? A 2 ? 19 1 1 B DT 10 1_555 A DA 1 1_555 0.618 -0.206 0.052 -6.574 -9.753 -0.805 10 B_DT10:DA1_A B 10 ? A 1 ? 20 1 1 C DA 1 1_555 D DT 10 1_555 -0.490 -0.122 0.046 6.142 -9.717 3.176 11 C_DA1:DT10_D C 1 ? D 10 ? 20 1 1 C DG 2 1_555 D DC 9 1_555 -0.315 -0.296 -0.014 0.500 -12.293 -3.820 12 C_DG2:DC9_D C 2 ? D 9 ? 19 1 1 C DA 3 1_555 D DT 8 1_555 0.107 -0.164 -0.046 -7.986 -8.995 -4.050 13 C_DA3:DT8_D C 3 ? D 8 ? 20 1 1 C DG 4 1_555 D DC 7 1_555 -0.251 -0.425 0.497 6.713 -5.953 -1.659 14 C_DG4:DC7_D C 4 ? D 7 ? 19 1 1 C DG 5 1_555 D DC 6 1_555 -0.001 -0.205 0.016 1.628 -16.123 -0.092 15 C_DG5:DC6_D C 5 ? D 6 ? 19 1 1 C DC 6 1_555 D DG 5 1_555 -0.041 0.379 0.048 -5.529 -14.129 15.946 16 C_DC6:DG5_D C 6 ? D 5 ? 19 1 1 C DC 7 1_555 D DG 4 1_555 0.521 -0.319 0.415 -10.163 -1.451 0.171 17 C_DC7:DG4_D C 7 ? D 4 ? 19 1 1 C DT 8 1_555 D DA 3 1_555 0.082 -0.028 -0.358 10.419 -9.253 -5.082 18 C_DT8:DA3_D C 8 ? D 3 ? 20 1 1 C DC 9 1_555 D DG 2 1_555 -0.079 -0.114 0.014 -4.676 -14.711 -1.436 19 C_DC9:DG2_D C 9 ? D 2 ? 19 1 1 C DT 10 1_555 D DA 1 1_555 0.154 -0.297 -0.042 -2.623 -10.546 0.185 20 C_DT10:DA1_D C 10 ? D 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DA 1 1_555 A DT 10 1_555 B DG 2 1_555 A DC 9 1_555 0.052 -0.550 3.368 -1.104 2.786 29.700 -1.660 -0.336 3.299 5.418 2.148 29.848 1 BB_DA1DG2:DC9DT10_AA B 1 ? A 10 ? B 2 ? A 9 ? 1 B DG 2 1_555 A DC 9 1_555 B DA 3 1_555 A DT 8 1_555 -1.024 -0.454 3.523 -1.885 0.924 40.114 -0.775 1.259 3.555 1.346 2.747 40.167 2 BB_DG2DA3:DT8DC9_AA B 2 ? A 9 ? B 3 ? A 8 ? 1 B DA 3 1_555 A DT 8 1_555 B DG 4 1_555 A DC 7 1_555 0.068 0.059 2.961 -4.947 4.595 30.410 -0.685 -0.983 2.892 8.626 9.288 31.133 3 BB_DA3DG4:DC7DT8_AA B 3 ? A 8 ? B 4 ? A 7 ? 1 B DG 4 1_555 A DC 7 1_555 B DG 5 1_555 A DC 6 1_555 0.911 -0.986 3.408 0.988 12.592 25.856 -4.767 -1.619 2.679 26.240 -2.058 28.729 4 BB_DG4DG5:DC6DC7_AA B 4 ? A 7 ? B 5 ? A 6 ? 1 B DG 5 1_555 A DC 6 1_555 B DC 6 1_555 A DG 5 1_555 -1.513 -0.387 3.308 -4.129 -0.493 34.526 -0.570 1.877 3.465 -0.826 6.925 34.768 5 BB_DG5DC6:DG5DC6_AA B 5 ? A 6 ? B 6 ? A 5 ? 1 B DC 6 1_555 A DG 5 1_555 B DC 7 1_555 A DG 4 1_555 -0.418 -0.564 3.480 -1.131 11.006 33.286 -2.661 0.518 3.153 18.586 1.911 35.028 6 BB_DC6DC7:DG4DG5_AA B 6 ? A 5 ? B 7 ? A 4 ? 1 B DC 7 1_555 A DG 4 1_555 B DT 8 1_555 A DA 3 1_555 -0.157 -0.137 3.119 5.744 9.565 30.668 -1.820 1.226 2.873 17.378 -10.437 32.588 7 BB_DC7DT8:DA3DG4_AA B 7 ? A 4 ? B 8 ? A 3 ? 1 B DT 8 1_555 A DA 3 1_555 B DC 9 1_555 A DG 2 1_555 0.211 -0.466 3.391 -3.338 3.632 38.247 -1.168 -0.744 3.306 5.516 5.068 38.552 8 BB_DT8DC9:DG2DA3_AA B 8 ? A 3 ? B 9 ? A 2 ? 1 B DC 9 1_555 A DG 2 1_555 B DT 10 1_555 A DA 1 1_555 -0.003 -0.469 3.379 4.080 4.118 32.904 -1.515 0.698 3.274 7.201 -7.134 33.397 9 BB_DC9DT10:DA1DG2_AA B 9 ? A 2 ? B 10 ? A 1 ? 1 B DT 10 1_555 A DA 1 1_555 C DA 1 1_555 D DT 10 1_555 -0.001 0.971 3.237 -0.173 1.757 -27.661 -2.443 -0.042 3.170 -3.670 -0.361 -27.716 10 BC_DT10DA1:DT10DA1_DA B 10 ? A 1 ? C 1 ? D 10 ? 1 C DA 1 1_555 D DT 10 1_555 C DG 2 1_555 D DC 9 1_555 -0.353 -0.448 3.425 -2.387 4.199 31.630 -1.605 0.190 3.356 7.647 4.348 31.988 11 CC_DA1DG2:DC9DT10_DD C 1 ? D 10 ? C 2 ? D 9 ? 1 C DG 2 1_555 D DC 9 1_555 C DA 3 1_555 D DT 8 1_555 -0.199 -0.346 3.403 -0.514 5.006 39.980 -1.089 0.229 3.339 7.286 0.749 40.283 12 CC_DG2DA3:DT8DC9_DD C 2 ? D 9 ? C 3 ? D 8 ? 1 C DA 3 1_555 D DT 8 1_555 C DG 4 1_555 D DC 7 1_555 0.198 -0.125 3.040 -5.255 7.190 30.021 -1.485 -1.283 2.860 13.510 9.875 31.285 13 CC_DA3DG4:DC7DT8_DD C 3 ? D 8 ? C 4 ? D 7 ? 1 C DG 4 1_555 D DC 7 1_555 C DG 5 1_555 D DC 6 1_555 0.531 -0.417 3.556 1.639 11.097 33.093 -2.501 -0.619 3.273 18.821 -2.780 34.892 14 CC_DG4DG5:DC6DC7_DD C 4 ? D 7 ? C 5 ? D 6 ? 1 C DG 5 1_555 D DC 6 1_555 C DC 6 1_555 D DG 5 1_555 1.848 -0.453 3.278 5.972 0.104 34.751 -0.765 -2.121 3.535 0.173 -9.908 35.245 15 CC_DG5DC6:DG5DC6_DD C 5 ? D 6 ? C 6 ? D 5 ? 1 C DC 6 1_555 D DG 5 1_555 C DC 7 1_555 D DG 4 1_555 -1.115 -0.694 3.494 -2.690 13.288 27.011 -4.148 1.572 2.933 26.439 5.353 30.166 16 CC_DC6DC7:DG4DG5_DD C 6 ? D 5 ? C 7 ? D 4 ? 1 C DC 7 1_555 D DG 4 1_555 C DT 8 1_555 D DA 3 1_555 -0.408 -0.070 2.912 7.849 5.514 29.471 -1.063 2.090 2.662 10.494 -14.939 30.960 17 CC_DC7DT8:DA3DG4_DD C 7 ? D 4 ? C 8 ? D 3 ? 1 C DT 8 1_555 D DA 3 1_555 C DC 9 1_555 D DG 2 1_555 0.564 -0.021 3.633 0.778 1.814 40.205 -0.259 -0.722 3.639 2.636 -1.132 40.251 18 CC_DT8DC9:DG2DA3_DD C 8 ? D 3 ? C 9 ? D 2 ? 1 C DC 9 1_555 D DG 2 1_555 C DT 10 1_555 D DA 1 1_555 -0.171 0.156 3.410 2.756 3.918 30.040 -0.522 0.903 3.374 7.499 -5.274 30.410 19 CC_DC9DT10:DA1DG2_DD C 9 ? D 2 ? C 10 ? D 1 ? # _pdbx_audit_support.funding_organization 'Other private' _pdbx_audit_support.country Spain _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'ideal B-DNA' # _atom_sites.entry_id 9T9D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.010819 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007893 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023048 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.2678 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 1.0495 # loop_ #