data_9TBF # _entry.id 9TBF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9TBF pdb_00009tbf 10.2210/pdb9tbf/pdb WWPDB D_1292151879 ? ? EMDB EMD-55769 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-12-17 ? 2 'EM metadata' 1 0 2025-12-17 ? 3 'Half map' 1 0 2025-12-17 1 4 'Half map' 1 0 2025-12-17 2 5 Image 1 0 2025-12-17 ? 6 Mask 1 0 2025-12-17 1 7 'Primary map' 1 0 2025-12-17 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 Mask repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9TBF _pdbx_database_status.recvd_initial_deposition_date 2025-11-19 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'different protein, same paper' EMD-55761 'other EM volume' PDB 'same protein, same paper' 9TBD unspecified EMDB 'same protein, same paper' EMD-55765 'other EM volume' PDB 'same protein, same paper' 9TBE unspecified EMDB 'same protein, same paper' EMD-55766 'other EM volume' EMDB 'Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the O2 state' EMD-55769 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email ulrich.lorenz@epfl.ch _pdbx_contact_author.name_first Ulrich _pdbx_contact_author.name_last Lorenz _pdbx_contact_author.name_mi J _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8869-5999 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Haubner, M.' 1 0000-0002-7320-240X 'Williams, H.M.' 2 0000-0001-9108-9933 'Hruby, J.' 3 0000-0002-5837-9119 'Straub, M.S.' 4 0000-0002-7721-5048 'Guskov, A.' 5 0000-0003-2340-2216 'Kovalev, K.' 6 0000-0002-2229-181X 'Drabbels, M.' 7 0000-0001-8611-2684 'Lorenz, U.J.' 8 0000-0002-8869-5999 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Microsecond Time-Resolved Cryo-EM Based on Jet Vitrification.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1101/2025.11.21.689681 _citation.pdbx_database_id_PubMed 41332690 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Haubner, M.' 1 0000-0002-7320-240X primary 'Williams, H.M.' 2 0000-0001-9108-9933 primary 'Hruby, J.' 3 0000-0002-5837-9119 primary 'Straub, M.S.' 4 0000-0002-7721-5048 primary 'Guskov, A.' 5 0000-0003-2340-2216 primary 'Kovalev, K.' 6 0000-0002-2229-181X primary 'Drabbels, M.' 7 0000-0001-8611-2684 primary 'Lorenz, U.J.' 8 0000-0002-8869-5999 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bacteriorhodopsin-like protein' 30676.467 1 ? ? ? 'Bear in mind that LFA and LMT are not part of the sequence here. They derive from the protein solution.' 2 non-polymer syn EICOSANE 282.547 10 ? ? ? ? 3 non-polymer syn DODECYL-BETA-D-MALTOSIDE 510.615 3 ? ? ? ? 4 non-polymer syn RETINAL 284.436 1 ? ? ? ? 5 water nat water 18.015 13 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MPSIENFLAYDFWQYDVIRHLFAFSTAVFLAGLVYFAMTARTTAPNYRLSANISAVVMVSAALELGQLWLLWNESFQWAE LQGSFVPVAGERFSNGYRYMNWLIDVPMLATQLVVVCGFVGTELRNRWAKLTIAGVLMILTGYVGQYFEPAVAGVPGYEG AEQFWIWGIISTAFFVWMLLILANAVRNPQGAPSDEVRSRLKFCFWFLLATWSIYPFAYAMPLFAPTADGVVVRQVIYTV ADVSSKLVFGVILSQVALRRSAEEGFEPARVASG ; _entity_poly.pdbx_seq_one_letter_code_can ;MPSIENFLAYDFWQYDVIRHLFAFSTAVFLAGLVYFAMTARTTAPNYRLSANISAVVMVSAALELGQLWLLWNESFQWAE LQGSFVPVAGERFSNGYRYMNWLIDVPMLATQLVVVCGFVGTELRNRWAKLTIAGVLMILTGYVGQYFEPAVAGVPGYEG AEQFWIWGIISTAFFVWMLLILANAVRNPQGAPSDEVRSRLKFCFWFLLATWSIYPFAYAMPLFAPTADGVVVRQVIYTV ADVSSKLVFGVILSQVALRRSAEEGFEPARVASG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 EICOSANE LFA 3 DODECYL-BETA-D-MALTOSIDE LMT 4 RETINAL RET 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PRO n 1 3 SER n 1 4 ILE n 1 5 GLU n 1 6 ASN n 1 7 PHE n 1 8 LEU n 1 9 ALA n 1 10 TYR n 1 11 ASP n 1 12 PHE n 1 13 TRP n 1 14 GLN n 1 15 TYR n 1 16 ASP n 1 17 VAL n 1 18 ILE n 1 19 ARG n 1 20 HIS n 1 21 LEU n 1 22 PHE n 1 23 ALA n 1 24 PHE n 1 25 SER n 1 26 THR n 1 27 ALA n 1 28 VAL n 1 29 PHE n 1 30 LEU n 1 31 ALA n 1 32 GLY n 1 33 LEU n 1 34 VAL n 1 35 TYR n 1 36 PHE n 1 37 ALA n 1 38 MET n 1 39 THR n 1 40 ALA n 1 41 ARG n 1 42 THR n 1 43 THR n 1 44 ALA n 1 45 PRO n 1 46 ASN n 1 47 TYR n 1 48 ARG n 1 49 LEU n 1 50 SER n 1 51 ALA n 1 52 ASN n 1 53 ILE n 1 54 SER n 1 55 ALA n 1 56 VAL n 1 57 VAL n 1 58 MET n 1 59 VAL n 1 60 SER n 1 61 ALA n 1 62 ALA n 1 63 LEU n 1 64 GLU n 1 65 LEU n 1 66 GLY n 1 67 GLN n 1 68 LEU n 1 69 TRP n 1 70 LEU n 1 71 LEU n 1 72 TRP n 1 73 ASN n 1 74 GLU n 1 75 SER n 1 76 PHE n 1 77 GLN n 1 78 TRP n 1 79 ALA n 1 80 GLU n 1 81 LEU n 1 82 GLN n 1 83 GLY n 1 84 SER n 1 85 PHE n 1 86 VAL n 1 87 PRO n 1 88 VAL n 1 89 ALA n 1 90 GLY n 1 91 GLU n 1 92 ARG n 1 93 PHE n 1 94 SER n 1 95 ASN n 1 96 GLY n 1 97 TYR n 1 98 ARG n 1 99 TYR n 1 100 MET n 1 101 ASN n 1 102 TRP n 1 103 LEU n 1 104 ILE n 1 105 ASP n 1 106 VAL n 1 107 PRO n 1 108 MET n 1 109 LEU n 1 110 ALA n 1 111 THR n 1 112 GLN n 1 113 LEU n 1 114 VAL n 1 115 VAL n 1 116 VAL n 1 117 CYS n 1 118 GLY n 1 119 PHE n 1 120 VAL n 1 121 GLY n 1 122 THR n 1 123 GLU n 1 124 LEU n 1 125 ARG n 1 126 ASN n 1 127 ARG n 1 128 TRP n 1 129 ALA n 1 130 LYS n 1 131 LEU n 1 132 THR n 1 133 ILE n 1 134 ALA n 1 135 GLY n 1 136 VAL n 1 137 LEU n 1 138 MET n 1 139 ILE n 1 140 LEU n 1 141 THR n 1 142 GLY n 1 143 TYR n 1 144 VAL n 1 145 GLY n 1 146 GLN n 1 147 TYR n 1 148 PHE n 1 149 GLU n 1 150 PRO n 1 151 ALA n 1 152 VAL n 1 153 ALA n 1 154 GLY n 1 155 VAL n 1 156 PRO n 1 157 GLY n 1 158 TYR n 1 159 GLU n 1 160 GLY n 1 161 ALA n 1 162 GLU n 1 163 GLN n 1 164 PHE n 1 165 TRP n 1 166 ILE n 1 167 TRP n 1 168 GLY n 1 169 ILE n 1 170 ILE n 1 171 SER n 1 172 THR n 1 173 ALA n 1 174 PHE n 1 175 PHE n 1 176 VAL n 1 177 TRP n 1 178 MET n 1 179 LEU n 1 180 LEU n 1 181 ILE n 1 182 LEU n 1 183 ALA n 1 184 ASN n 1 185 ALA n 1 186 VAL n 1 187 ARG n 1 188 ASN n 1 189 PRO n 1 190 GLN n 1 191 GLY n 1 192 ALA n 1 193 PRO n 1 194 SER n 1 195 ASP n 1 196 GLU n 1 197 VAL n 1 198 ARG n 1 199 SER n 1 200 ARG n 1 201 LEU n 1 202 LYS n 1 203 PHE n 1 204 CYS n 1 205 PHE n 1 206 TRP n 1 207 PHE n 1 208 LEU n 1 209 LEU n 1 210 ALA n 1 211 THR n 1 212 TRP n 1 213 SER n 1 214 ILE n 1 215 TYR n 1 216 PRO n 1 217 PHE n 1 218 ALA n 1 219 TYR n 1 220 ALA n 1 221 MET n 1 222 PRO n 1 223 LEU n 1 224 PHE n 1 225 ALA n 1 226 PRO n 1 227 THR n 1 228 ALA n 1 229 ASP n 1 230 GLY n 1 231 VAL n 1 232 VAL n 1 233 VAL n 1 234 ARG n 1 235 GLN n 1 236 VAL n 1 237 ILE n 1 238 TYR n 1 239 THR n 1 240 VAL n 1 241 ALA n 1 242 ASP n 1 243 VAL n 1 244 SER n 1 245 SER n 1 246 LYS n 1 247 LEU n 1 248 VAL n 1 249 PHE n 1 250 GLY n 1 251 VAL n 1 252 ILE n 1 253 LEU n 1 254 SER n 1 255 GLN n 1 256 VAL n 1 257 ALA n 1 258 LEU n 1 259 ARG n 1 260 ARG n 1 261 SER n 1 262 ALA n 1 263 GLU n 1 264 GLU n 1 265 GLY n 1 266 PHE n 1 267 GLU n 1 268 PRO n 1 269 ALA n 1 270 ARG n 1 271 VAL n 1 272 ALA n 1 273 SER n 1 274 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 274 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name Erythrobacter _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1041 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LFA non-polymer . EICOSANE 'LIPID FRAGMENT' 'C20 H42' 282.547 LMT D-saccharide . DODECYL-BETA-D-MALTOSIDE ? 'C24 H46 O11' 510.615 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 PRO 2 2 2 PRO PRO A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ASN 6 6 6 ASN ASN A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 TYR 15 15 15 TYR TYR A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 PHE 22 22 22 PHE PHE A . n A 1 23 ALA 23 23 23 ALA ALA A . n A 1 24 PHE 24 24 24 PHE PHE A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 PHE 36 36 36 PHE PHE A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 THR 39 39 39 THR THR A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 PRO 45 45 45 PRO PRO A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 ARG 48 48 48 ARG ARG A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 GLU 64 64 64 GLU GLU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 TRP 72 72 72 TRP TRP A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 GLU 74 74 74 GLU GLU A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 GLN 77 77 77 GLN GLN A . n A 1 78 TRP 78 78 78 TRP TRP A . n A 1 79 ALA 79 79 79 ALA ALA A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLN 82 82 82 GLN GLN A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 PHE 85 85 85 PHE PHE A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 PRO 87 87 87 PRO PRO A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 GLU 91 91 91 GLU GLU A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ASN 95 95 95 ASN ASN A . n A 1 96 GLY 96 96 96 GLY GLY A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 MET 100 100 100 MET MET A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 TRP 102 102 102 TRP TRP A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 VAL 106 106 106 VAL VAL A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 MET 108 108 108 MET MET A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 GLN 112 112 112 GLN GLN A . n A 1 113 LEU 113 113 113 LEU LEU A . n A 1 114 VAL 114 114 114 VAL VAL A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 VAL 116 116 116 VAL VAL A . n A 1 117 CYS 117 117 117 CYS CYS A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 TRP 128 128 128 TRP TRP A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 THR 132 132 132 THR THR A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 MET 138 138 138 MET MET A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 THR 141 141 141 THR THR A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 GLN 146 146 146 GLN GLN A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 GLU 149 149 149 GLU GLU A . n A 1 150 PRO 150 150 150 PRO PRO A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 VAL 152 152 152 VAL VAL A . n A 1 153 ALA 153 153 153 ALA ALA A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 PRO 156 156 156 PRO PRO A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 TYR 158 158 158 TYR TYR A . n A 1 159 GLU 159 159 159 GLU GLU A . n A 1 160 GLY 160 160 160 GLY GLY A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 GLU 162 162 162 GLU GLU A . n A 1 163 GLN 163 163 163 GLN GLN A . n A 1 164 PHE 164 164 164 PHE PHE A . n A 1 165 TRP 165 165 165 TRP TRP A . n A 1 166 ILE 166 166 166 ILE ILE A . n A 1 167 TRP 167 167 167 TRP TRP A . n A 1 168 GLY 168 168 168 GLY GLY A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 SER 171 171 171 SER SER A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 PHE 174 174 174 PHE PHE A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 VAL 176 176 176 VAL VAL A . n A 1 177 TRP 177 177 177 TRP TRP A . n A 1 178 MET 178 178 178 MET MET A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 ASN 184 184 184 ASN ASN A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 VAL 186 186 186 VAL VAL A . n A 1 187 ARG 187 187 187 ARG ARG A . n A 1 188 ASN 188 188 188 ASN ASN A . n A 1 189 PRO 189 189 189 PRO PRO A . n A 1 190 GLN 190 190 190 GLN GLN A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 PRO 193 193 193 PRO PRO A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 GLU 196 196 196 GLU GLU A . n A 1 197 VAL 197 197 197 VAL VAL A . n A 1 198 ARG 198 198 198 ARG ARG A . n A 1 199 SER 199 199 199 SER SER A . n A 1 200 ARG 200 200 200 ARG ARG A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 PHE 203 203 203 PHE PHE A . n A 1 204 CYS 204 204 204 CYS CYS A . n A 1 205 PHE 205 205 205 PHE PHE A . n A 1 206 TRP 206 206 206 TRP TRP A . n A 1 207 PHE 207 207 207 PHE PHE A . n A 1 208 LEU 208 208 208 LEU LEU A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 THR 211 211 211 THR THR A . n A 1 212 TRP 212 212 212 TRP TRP A . n A 1 213 SER 213 213 213 SER SER A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 TYR 215 215 215 TYR TYR A . n A 1 216 PRO 216 216 216 PRO PRO A . n A 1 217 PHE 217 217 217 PHE PHE A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 TYR 219 219 219 TYR TYR A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 MET 221 221 221 MET MET A . n A 1 222 PRO 222 222 222 PRO PRO A . n A 1 223 LEU 223 223 223 LEU LEU A . n A 1 224 PHE 224 224 224 PHE PHE A . n A 1 225 ALA 225 225 225 ALA ALA A . n A 1 226 PRO 226 226 226 PRO PRO A . n A 1 227 THR 227 227 227 THR THR A . n A 1 228 ALA 228 228 228 ALA ALA A . n A 1 229 ASP 229 229 229 ASP ASP A . n A 1 230 GLY 230 230 230 GLY GLY A . n A 1 231 VAL 231 231 231 VAL VAL A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 VAL 233 233 233 VAL VAL A . n A 1 234 ARG 234 234 234 ARG ARG A . n A 1 235 GLN 235 235 235 GLN GLN A . n A 1 236 VAL 236 236 236 VAL VAL A . n A 1 237 ILE 237 237 237 ILE ILE A . n A 1 238 TYR 238 238 238 TYR TYR A . n A 1 239 THR 239 239 239 THR THR A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 ASP 242 242 242 ASP ASP A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 SER 245 245 245 SER SER A . n A 1 246 LYS 246 246 246 LYS LYR A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 VAL 248 248 248 VAL VAL A . n A 1 249 PHE 249 249 249 PHE PHE A . n A 1 250 GLY 250 250 250 GLY GLY A . n A 1 251 VAL 251 251 251 VAL VAL A . n A 1 252 ILE 252 252 252 ILE ILE A . n A 1 253 LEU 253 253 253 LEU LEU A . n A 1 254 SER 254 254 254 SER SER A . n A 1 255 GLN 255 255 255 GLN GLN A . n A 1 256 VAL 256 256 256 VAL VAL A . n A 1 257 ALA 257 257 257 ALA ALA A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 ARG 259 259 259 ARG ARG A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 SER 261 261 261 SER SER A . n A 1 262 ALA 262 262 262 ALA ALA A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 GLU 264 264 264 GLU GLU A . n A 1 265 GLY 265 265 265 GLY GLY A . n A 1 266 PHE 266 266 266 PHE PHE A . n A 1 267 GLU 267 267 267 GLU GLU A . n A 1 268 PRO 268 268 268 PRO PRO A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 ARG 270 270 270 ARG ARG A . n A 1 271 VAL 271 271 271 VAL VAL A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 SER 273 273 273 SER SER A . n A 1 274 GLY 274 274 274 GLY GLY A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id RET _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id RET _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LFA 1 301 301 LFA LFA A . C 2 LFA 1 302 302 LFA LFA A . D 2 LFA 1 303 303 LFA LFA A . E 2 LFA 1 304 304 LFA LFA A . F 2 LFA 1 305 305 LFA LFA A . G 2 LFA 1 306 306 LFA LFA A . H 2 LFA 1 307 307 LFA LFA A . I 2 LFA 1 308 308 LFA LFA A . J 2 LFA 1 309 309 LFA LFA A . K 2 LFA 1 310 310 LFA LFA A . L 3 LMT 1 311 311 LMT LMT A . M 3 LMT 1 312 312 LMT LMT A . N 3 LMT 1 313 313 LMT LMT A . O 4 RET 1 314 246 RET LYR A . P 5 HOH 1 401 13 HOH HOH A . P 5 HOH 2 402 1 HOH HOH A . P 5 HOH 3 403 2 HOH HOH A . P 5 HOH 4 404 12 HOH HOH A . P 5 HOH 5 405 5 HOH HOH A . P 5 HOH 6 406 11 HOH HOH A . P 5 HOH 7 407 6 HOH HOH A . P 5 HOH 8 408 8 HOH HOH A . P 5 HOH 9 409 3 HOH HOH A . P 5 HOH 10 410 7 HOH HOH A . P 5 HOH 11 411 9 HOH HOH A . P 5 HOH 12 412 4 HOH HOH A . P 5 HOH 13 413 10 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A LFA 301 ? C11 ? B LFA 1 C11 2 1 N 1 A LFA 301 ? C12 ? B LFA 1 C12 3 1 N 1 A LFA 301 ? C13 ? B LFA 1 C13 4 1 N 1 A LFA 301 ? C14 ? B LFA 1 C14 5 1 N 1 A LFA 301 ? C15 ? B LFA 1 C15 6 1 N 1 A LFA 301 ? C16 ? B LFA 1 C16 7 1 N 1 A LFA 301 ? C17 ? B LFA 1 C17 8 1 N 1 A LFA 301 ? C18 ? B LFA 1 C18 9 1 N 1 A LFA 301 ? C19 ? B LFA 1 C19 10 1 N 1 A LFA 301 ? C20 ? B LFA 1 C20 11 1 N 1 A LFA 302 ? C11 ? C LFA 1 C11 12 1 N 1 A LFA 302 ? C12 ? C LFA 1 C12 13 1 N 1 A LFA 302 ? C13 ? C LFA 1 C13 14 1 N 1 A LFA 302 ? C14 ? C LFA 1 C14 15 1 N 1 A LFA 302 ? C15 ? C LFA 1 C15 16 1 N 1 A LFA 302 ? C16 ? C LFA 1 C16 17 1 N 1 A LFA 302 ? C17 ? C LFA 1 C17 18 1 N 1 A LFA 302 ? C18 ? C LFA 1 C18 19 1 N 1 A LFA 302 ? C19 ? C LFA 1 C19 20 1 N 1 A LFA 302 ? C20 ? C LFA 1 C20 21 1 N 1 A LFA 303 ? C1 ? D LFA 1 C1 22 1 N 1 A LFA 303 ? C2 ? D LFA 1 C2 23 1 N 1 A LFA 303 ? C3 ? D LFA 1 C3 24 1 N 1 A LFA 303 ? C4 ? D LFA 1 C4 25 1 N 1 A LFA 303 ? C5 ? D LFA 1 C5 26 1 N 1 A LFA 303 ? C6 ? D LFA 1 C6 27 1 N 1 A LFA 303 ? C7 ? D LFA 1 C7 28 1 N 1 A LFA 303 ? C8 ? D LFA 1 C8 29 1 N 1 A LFA 304 ? C1 ? E LFA 1 C1 30 1 N 1 A LFA 304 ? C2 ? E LFA 1 C2 31 1 N 1 A LFA 304 ? C3 ? E LFA 1 C3 32 1 N 1 A LFA 304 ? C4 ? E LFA 1 C4 33 1 N 1 A LFA 304 ? C5 ? E LFA 1 C5 34 1 N 1 A LFA 304 ? C6 ? E LFA 1 C6 35 1 N 1 A LFA 304 ? C7 ? E LFA 1 C7 36 1 N 1 A LFA 304 ? C8 ? E LFA 1 C8 37 1 N 1 A LFA 304 ? C9 ? E LFA 1 C9 38 1 N 1 A LFA 304 ? C10 ? E LFA 1 C10 39 1 N 1 A LFA 304 ? C11 ? E LFA 1 C11 40 1 N 1 A LFA 304 ? C12 ? E LFA 1 C12 41 1 N 1 A LFA 304 ? C13 ? E LFA 1 C13 42 1 N 1 A LFA 305 ? C1 ? F LFA 1 C1 43 1 N 1 A LFA 305 ? C2 ? F LFA 1 C2 44 1 N 1 A LFA 305 ? C3 ? F LFA 1 C3 45 1 N 1 A LFA 305 ? C4 ? F LFA 1 C4 46 1 N 1 A LFA 305 ? C5 ? F LFA 1 C5 47 1 N 1 A LFA 305 ? C6 ? F LFA 1 C6 48 1 N 1 A LFA 305 ? C7 ? F LFA 1 C7 49 1 N 1 A LFA 305 ? C8 ? F LFA 1 C8 50 1 N 1 A LFA 305 ? C9 ? F LFA 1 C9 51 1 N 1 A LFA 305 ? C10 ? F LFA 1 C10 52 1 N 1 A LFA 305 ? C11 ? F LFA 1 C11 53 1 N 1 A LFA 305 ? C12 ? F LFA 1 C12 54 1 N 1 A LFA 305 ? C13 ? F LFA 1 C13 55 1 N 1 A LFA 306 ? C17 ? G LFA 1 C17 56 1 N 1 A LFA 306 ? C18 ? G LFA 1 C18 57 1 N 1 A LFA 306 ? C19 ? G LFA 1 C19 58 1 N 1 A LFA 306 ? C20 ? G LFA 1 C20 59 1 N 1 A LFA 307 ? C6 ? H LFA 1 C6 60 1 N 1 A LFA 307 ? C7 ? H LFA 1 C7 61 1 N 1 A LFA 307 ? C8 ? H LFA 1 C8 62 1 N 1 A LFA 307 ? C9 ? H LFA 1 C9 63 1 N 1 A LFA 307 ? C10 ? H LFA 1 C10 64 1 N 1 A LFA 307 ? C11 ? H LFA 1 C11 65 1 N 1 A LFA 307 ? C12 ? H LFA 1 C12 66 1 N 1 A LFA 307 ? C13 ? H LFA 1 C13 67 1 N 1 A LFA 307 ? C14 ? H LFA 1 C14 68 1 N 1 A LFA 307 ? C15 ? H LFA 1 C15 69 1 N 1 A LFA 307 ? C16 ? H LFA 1 C16 70 1 N 1 A LFA 307 ? C17 ? H LFA 1 C17 71 1 N 1 A LFA 307 ? C18 ? H LFA 1 C18 72 1 N 1 A LFA 307 ? C19 ? H LFA 1 C19 73 1 N 1 A LFA 307 ? C20 ? H LFA 1 C20 74 1 N 1 A LFA 308 ? C1 ? I LFA 1 C1 75 1 N 1 A LFA 308 ? C2 ? I LFA 1 C2 76 1 N 1 A LFA 308 ? C3 ? I LFA 1 C3 77 1 N 1 A LFA 308 ? C4 ? I LFA 1 C4 78 1 N 1 A LFA 308 ? C5 ? I LFA 1 C5 79 1 N 1 A LFA 308 ? C6 ? I LFA 1 C6 80 1 N 1 A LFA 308 ? C7 ? I LFA 1 C7 81 1 N 1 A LFA 308 ? C8 ? I LFA 1 C8 82 1 N 1 A LFA 308 ? C9 ? I LFA 1 C9 83 1 N 1 A LFA 308 ? C10 ? I LFA 1 C10 84 1 N 1 A LFA 308 ? C11 ? I LFA 1 C11 85 1 N 1 A LFA 308 ? C12 ? I LFA 1 C12 86 1 N 1 A LFA 308 ? C13 ? I LFA 1 C13 87 1 N 1 A LFA 308 ? C14 ? I LFA 1 C14 88 1 N 1 A LFA 309 ? C17 ? J LFA 1 C17 89 1 N 1 A LFA 309 ? C18 ? J LFA 1 C18 90 1 N 1 A LFA 309 ? C19 ? J LFA 1 C19 91 1 N 1 A LFA 309 ? C20 ? J LFA 1 C20 92 1 N 1 A LFA 310 ? C11 ? K LFA 1 C11 93 1 N 1 A LFA 310 ? C12 ? K LFA 1 C12 94 1 N 1 A LFA 310 ? C13 ? K LFA 1 C13 95 1 N 1 A LFA 310 ? C14 ? K LFA 1 C14 96 1 N 1 A LFA 310 ? C15 ? K LFA 1 C15 97 1 N 1 A LFA 310 ? C16 ? K LFA 1 C16 98 1 N 1 A LFA 310 ? C17 ? K LFA 1 C17 99 1 N 1 A LFA 310 ? C18 ? K LFA 1 C18 100 1 N 1 A LFA 310 ? C19 ? K LFA 1 C19 101 1 N 1 A LFA 310 ? C20 ? K LFA 1 C20 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9TBF _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9TBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9TBF _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9TBF _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.3 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.003 ? 2457 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.698 ? 3309 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 11.433 ? 569 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.043 ? 368 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.004 ? 386 ? f_plane_restr ? ? ? # _struct.entry_id 9TBF _struct.title 'Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the O2 state' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9TBF _struct_keywords.text 'rhodopsin, ErNaR, sodium pump, phototransduction, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 3 ? N N N 3 ? O N N 4 ? P N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9TBF _struct_ref.pdbx_db_accession 9TBF _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9TBF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 274 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9TBF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 274 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 274 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 4 ? LEU A 8 ? ILE A 4 LEU A 8 5 ? 5 HELX_P HELX_P2 AA2 ASP A 11 ? VAL A 28 ? ASP A 11 VAL A 28 1 ? 18 HELX_P HELX_P3 AA3 VAL A 28 ? THR A 39 ? VAL A 28 THR A 39 1 ? 12 HELX_P HELX_P4 AA4 ALA A 44 ? TYR A 47 ? ALA A 44 TYR A 47 5 ? 4 HELX_P HELX_P5 AA5 ARG A 48 ? SER A 75 ? ARG A 48 SER A 75 1 ? 28 HELX_P HELX_P6 AA6 ASN A 95 ? VAL A 106 ? ASN A 95 VAL A 106 1 ? 12 HELX_P HELX_P7 AA7 VAL A 106 ? CYS A 117 ? VAL A 106 CYS A 117 1 ? 12 HELX_P HELX_P8 AA8 GLY A 121 ? GLY A 135 ? GLY A 121 GLY A 135 1 ? 15 HELX_P HELX_P9 AA9 MET A 138 ? TYR A 143 ? MET A 138 TYR A 143 1 ? 6 HELX_P HELX_P10 AB1 VAL A 144 ? TYR A 147 ? VAL A 144 TYR A 147 5 ? 4 HELX_P HELX_P11 AB2 PHE A 148 ? GLY A 154 ? PHE A 148 GLY A 154 1 ? 7 HELX_P HELX_P12 AB3 GLY A 160 ? ALA A 183 ? GLY A 160 ALA A 183 1 ? 24 HELX_P HELX_P13 AB4 VAL A 197 ? ALA A 210 ? VAL A 197 ALA A 210 1 ? 14 HELX_P HELX_P14 AB5 SER A 213 ? ALA A 220 ? SER A 213 ALA A 220 1 ? 8 HELX_P HELX_P15 AB6 ALA A 220 ? ALA A 225 ? ALA A 220 ALA A 225 1 ? 6 HELX_P HELX_P16 AB7 THR A 227 ? ILE A 237 ? THR A 227 ILE A 237 1 ? 11 HELX_P HELX_P17 AB8 LEU A 247 ? SER A 261 ? LEU A 247 SER A 261 1 ? 15 HELX_P HELX_P18 AB9 PHE A 266 ? VAL A 271 ? PHE A 266 VAL A 271 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id O _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C15 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 246 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 314 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.454 _struct_conn.pdbx_value_order sing _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id RET _pdbx_modification_feature.label_asym_id O _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 246 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id RET _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 314 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 246 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C15 _pdbx_modification_feature.modified_residue_id_linking_atom NZ _pdbx_modification_feature.modified_residue_id LYS _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id RET _pdbx_modification_feature.type Retinoylation _pdbx_modification_feature.category Lipid/lipid-like # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 PHE A 76 ? ALA A 79 ? PHE A 76 ALA A 79 AA1 2 SER A 84 ? PRO A 87 ? SER A 84 PRO A 87 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id GLN _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 77 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id GLN _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 77 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 86 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 86 # _pdbx_entry_details.entry_id 9TBF _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 234 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CA _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 234 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 C _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 234 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 96.43 _pdbx_validate_rmsd_angle.angle_target_value 110.40 _pdbx_validate_rmsd_angle.angle_deviation -13.97 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.00 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 2 ? ? -68.22 -178.12 2 1 SER A 25 ? ? -87.41 41.98 3 1 THR A 26 ? ? -130.84 -39.17 4 1 MET A 108 ? ? -84.58 46.70 5 1 PHE A 224 ? ? -92.57 -60.76 6 1 ASP A 229 ? ? -91.43 46.03 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9TBF _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9TBF _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'Reconstruction conducted in C1 following symmetry expansion of particle stack in C5.' _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 67385 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10 mM HEPES pH 7.5, 500 mM NaCl' _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.name 'ErNaR light-driven sodium pump' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9TBF _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 165000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details 'Grid was sputter coated with 40 nm thick layer of silver beforehand using a Quorum Q300T device.' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9TBF _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 95 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'Vitrification carried out using a modified Vitrobot Mark IV, as outlined in the paper reporting this entry.' # _em_experiment.entry_id 9TBF _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 9TBF _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LFA C1 C N N 205 LFA C2 C N N 206 LFA C3 C N N 207 LFA C4 C N N 208 LFA C5 C N N 209 LFA C6 C N N 210 LFA C7 C N N 211 LFA C8 C N N 212 LFA C9 C N N 213 LFA C10 C N N 214 LFA C11 C N N 215 LFA C12 C N N 216 LFA C13 C N N 217 LFA C14 C N N 218 LFA C15 C N N 219 LFA C16 C N N 220 LFA C17 C N N 221 LFA C18 C N N 222 LFA C19 C N N 223 LFA C20 C N N 224 LFA H11 H N N 225 LFA H12 H N N 226 LFA H13 H N N 227 LFA H21 H N N 228 LFA H22 H N N 229 LFA H31 H N N 230 LFA H32 H N N 231 LFA H41 H N N 232 LFA H42 H N N 233 LFA H51 H N N 234 LFA H52 H N N 235 LFA H61 H N N 236 LFA H62 H N N 237 LFA H71 H N N 238 LFA H72 H N N 239 LFA H81 H N N 240 LFA H82 H N N 241 LFA H91 H N N 242 LFA H92 H N N 243 LFA H101 H N N 244 LFA H102 H N N 245 LFA H111 H N N 246 LFA H112 H N N 247 LFA H121 H N N 248 LFA H122 H N N 249 LFA H131 H N N 250 LFA H132 H N N 251 LFA H141 H N N 252 LFA H142 H N N 253 LFA H151 H N N 254 LFA H152 H N N 255 LFA H161 H N N 256 LFA H162 H N N 257 LFA H171 H N N 258 LFA H172 H N N 259 LFA H181 H N N 260 LFA H182 H N N 261 LFA H191 H N N 262 LFA H192 H N N 263 LFA H201 H N N 264 LFA H202 H N N 265 LFA H203 H N N 266 LMT C1B C N R 267 LMT C2B C N R 268 LMT C3B C N S 269 LMT C4B C N S 270 LMT C5B C N R 271 LMT C6B C N N 272 LMT O1B O N N 273 LMT O2B O N N 274 LMT O3B O N N 275 LMT "O4'" O N N 276 LMT O5B O N N 277 LMT O6B O N N 278 LMT "C1'" C N R 279 LMT "C2'" C N R 280 LMT "C3'" C N R 281 LMT "C4'" C N S 282 LMT "C5'" C N R 283 LMT "C6'" C N N 284 LMT "O1'" O N N 285 LMT "O2'" O N N 286 LMT "O3'" O N N 287 LMT "O5'" O N N 288 LMT "O6'" O N N 289 LMT C1 C N N 290 LMT C2 C N N 291 LMT C3 C N N 292 LMT C4 C N N 293 LMT C5 C N N 294 LMT C6 C N N 295 LMT C7 C N N 296 LMT C8 C N N 297 LMT C9 C N N 298 LMT C10 C N N 299 LMT C11 C N N 300 LMT C12 C N N 301 LMT H1B H N N 302 LMT H2B H N N 303 LMT H3B H N N 304 LMT H4B H N N 305 LMT H5B H N N 306 LMT "H6'2" H N N 307 LMT "H6'1" H N N 308 LMT H2O1 H N N 309 LMT H3O1 H N N 310 LMT H4O1 H N N 311 LMT H6B H N N 312 LMT "H1'" H N N 313 LMT "H2'" H N N 314 LMT "H3'" H N N 315 LMT "H4'" H N N 316 LMT "H5'" H N N 317 LMT H6D H N N 318 LMT H6E H N N 319 LMT H2O2 H N N 320 LMT H3O2 H N N 321 LMT "H6'" H N N 322 LMT H12 H N N 323 LMT H11 H N N 324 LMT H22 H N N 325 LMT H21 H N N 326 LMT H32 H N N 327 LMT H31 H N N 328 LMT H42 H N N 329 LMT H41 H N N 330 LMT H52 H N N 331 LMT H51 H N N 332 LMT H62 H N N 333 LMT H61 H N N 334 LMT H72 H N N 335 LMT H71 H N N 336 LMT H82 H N N 337 LMT H81 H N N 338 LMT H92 H N N 339 LMT H91 H N N 340 LMT H102 H N N 341 LMT H101 H N N 342 LMT H112 H N N 343 LMT H111 H N N 344 LMT H123 H N N 345 LMT H122 H N N 346 LMT H121 H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 RET C1 C N N 433 RET C2 C N N 434 RET C3 C N N 435 RET C4 C N N 436 RET C5 C N N 437 RET C6 C N N 438 RET C7 C N N 439 RET C8 C N N 440 RET C9 C N N 441 RET C10 C N N 442 RET C11 C N N 443 RET C12 C N N 444 RET C13 C N N 445 RET C14 C N N 446 RET C15 C N N 447 RET O1 O N N 448 RET C16 C N N 449 RET C17 C N N 450 RET C18 C N N 451 RET C19 C N N 452 RET C20 C N N 453 RET H21 H N N 454 RET H22 H N N 455 RET H31 H N N 456 RET H32 H N N 457 RET H41 H N N 458 RET H42 H N N 459 RET H7 H N N 460 RET H8 H N N 461 RET H10 H N N 462 RET H11 H N N 463 RET H12 H N N 464 RET H14 H N N 465 RET H15 H N N 466 RET H161 H N N 467 RET H162 H N N 468 RET H163 H N N 469 RET H171 H N N 470 RET H172 H N N 471 RET H173 H N N 472 RET H181 H N N 473 RET H182 H N N 474 RET H183 H N N 475 RET H191 H N N 476 RET H192 H N N 477 RET H193 H N N 478 RET H201 H N N 479 RET H202 H N N 480 RET H203 H N N 481 SER N N N N 482 SER CA C N S 483 SER C C N N 484 SER O O N N 485 SER CB C N N 486 SER OG O N N 487 SER OXT O N N 488 SER H H N N 489 SER H2 H N N 490 SER HA H N N 491 SER HB2 H N N 492 SER HB3 H N N 493 SER HG H N N 494 SER HXT H N N 495 THR N N N N 496 THR CA C N S 497 THR C C N N 498 THR O O N N 499 THR CB C N R 500 THR OG1 O N N 501 THR CG2 C N N 502 THR OXT O N N 503 THR H H N N 504 THR H2 H N N 505 THR HA H N N 506 THR HB H N N 507 THR HG1 H N N 508 THR HG21 H N N 509 THR HG22 H N N 510 THR HG23 H N N 511 THR HXT H N N 512 TRP N N N N 513 TRP CA C N S 514 TRP C C N N 515 TRP O O N N 516 TRP CB C N N 517 TRP CG C Y N 518 TRP CD1 C Y N 519 TRP CD2 C Y N 520 TRP NE1 N Y N 521 TRP CE2 C Y N 522 TRP CE3 C Y N 523 TRP CZ2 C Y N 524 TRP CZ3 C Y N 525 TRP CH2 C Y N 526 TRP OXT O N N 527 TRP H H N N 528 TRP H2 H N N 529 TRP HA H N N 530 TRP HB2 H N N 531 TRP HB3 H N N 532 TRP HD1 H N N 533 TRP HE1 H N N 534 TRP HE3 H N N 535 TRP HZ2 H N N 536 TRP HZ3 H N N 537 TRP HH2 H N N 538 TRP HXT H N N 539 TYR N N N N 540 TYR CA C N S 541 TYR C C N N 542 TYR O O N N 543 TYR CB C N N 544 TYR CG C Y N 545 TYR CD1 C Y N 546 TYR CD2 C Y N 547 TYR CE1 C Y N 548 TYR CE2 C Y N 549 TYR CZ C Y N 550 TYR OH O N N 551 TYR OXT O N N 552 TYR H H N N 553 TYR H2 H N N 554 TYR HA H N N 555 TYR HB2 H N N 556 TYR HB3 H N N 557 TYR HD1 H N N 558 TYR HD2 H N N 559 TYR HE1 H N N 560 TYR HE2 H N N 561 TYR HH H N N 562 TYR HXT H N N 563 VAL N N N N 564 VAL CA C N S 565 VAL C C N N 566 VAL O O N N 567 VAL CB C N N 568 VAL CG1 C N N 569 VAL CG2 C N N 570 VAL OXT O N N 571 VAL H H N N 572 VAL H2 H N N 573 VAL HA H N N 574 VAL HB H N N 575 VAL HG11 H N N 576 VAL HG12 H N N 577 VAL HG13 H N N 578 VAL HG21 H N N 579 VAL HG22 H N N 580 VAL HG23 H N N 581 VAL HXT H N N 582 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LFA C1 C2 sing N N 194 LFA C1 H11 sing N N 195 LFA C1 H12 sing N N 196 LFA C1 H13 sing N N 197 LFA C2 C3 sing N N 198 LFA C2 H21 sing N N 199 LFA C2 H22 sing N N 200 LFA C3 C4 sing N N 201 LFA C3 H31 sing N N 202 LFA C3 H32 sing N N 203 LFA C4 C5 sing N N 204 LFA C4 H41 sing N N 205 LFA C4 H42 sing N N 206 LFA C5 C6 sing N N 207 LFA C5 H51 sing N N 208 LFA C5 H52 sing N N 209 LFA C6 C7 sing N N 210 LFA C6 H61 sing N N 211 LFA C6 H62 sing N N 212 LFA C7 C8 sing N N 213 LFA C7 H71 sing N N 214 LFA C7 H72 sing N N 215 LFA C8 C9 sing N N 216 LFA C8 H81 sing N N 217 LFA C8 H82 sing N N 218 LFA C9 C10 sing N N 219 LFA C9 H91 sing N N 220 LFA C9 H92 sing N N 221 LFA C10 C11 sing N N 222 LFA C10 H101 sing N N 223 LFA C10 H102 sing N N 224 LFA C11 C12 sing N N 225 LFA C11 H111 sing N N 226 LFA C11 H112 sing N N 227 LFA C12 C13 sing N N 228 LFA C12 H121 sing N N 229 LFA C12 H122 sing N N 230 LFA C13 C14 sing N N 231 LFA C13 H131 sing N N 232 LFA C13 H132 sing N N 233 LFA C14 C15 sing N N 234 LFA C14 H141 sing N N 235 LFA C14 H142 sing N N 236 LFA C15 C16 sing N N 237 LFA C15 H151 sing N N 238 LFA C15 H152 sing N N 239 LFA C16 C17 sing N N 240 LFA C16 H161 sing N N 241 LFA C16 H162 sing N N 242 LFA C17 C18 sing N N 243 LFA C17 H171 sing N N 244 LFA C17 H172 sing N N 245 LFA C18 C19 sing N N 246 LFA C18 H181 sing N N 247 LFA C18 H182 sing N N 248 LFA C19 C20 sing N N 249 LFA C19 H191 sing N N 250 LFA C19 H192 sing N N 251 LFA C20 H201 sing N N 252 LFA C20 H202 sing N N 253 LFA C20 H203 sing N N 254 LMT C1B C2B sing N N 255 LMT C1B O1B sing N N 256 LMT C1B O5B sing N N 257 LMT C1B H1B sing N N 258 LMT C2B C3B sing N N 259 LMT C2B O2B sing N N 260 LMT C2B H2B sing N N 261 LMT C3B C4B sing N N 262 LMT C3B O3B sing N N 263 LMT C3B H3B sing N N 264 LMT C4B C5B sing N N 265 LMT C4B "O4'" sing N N 266 LMT C4B H4B sing N N 267 LMT C5B C6B sing N N 268 LMT C5B O5B sing N N 269 LMT C5B H5B sing N N 270 LMT C6B O6B sing N N 271 LMT C6B "H6'2" sing N N 272 LMT C6B "H6'1" sing N N 273 LMT O1B "C4'" sing N N 274 LMT O2B H2O1 sing N N 275 LMT O3B H3O1 sing N N 276 LMT "O4'" H4O1 sing N N 277 LMT O6B H6B sing N N 278 LMT "C1'" "C2'" sing N N 279 LMT "C1'" "O1'" sing N N 280 LMT "C1'" "O5'" sing N N 281 LMT "C1'" "H1'" sing N N 282 LMT "C2'" "C3'" sing N N 283 LMT "C2'" "O2'" sing N N 284 LMT "C2'" "H2'" sing N N 285 LMT "C3'" "C4'" sing N N 286 LMT "C3'" "O3'" sing N N 287 LMT "C3'" "H3'" sing N N 288 LMT "C4'" "C5'" sing N N 289 LMT "C4'" "H4'" sing N N 290 LMT "C5'" "C6'" sing N N 291 LMT "C5'" "O5'" sing N N 292 LMT "C5'" "H5'" sing N N 293 LMT "C6'" "O6'" sing N N 294 LMT "C6'" H6D sing N N 295 LMT "C6'" H6E sing N N 296 LMT "O1'" C1 sing N N 297 LMT "O2'" H2O2 sing N N 298 LMT "O3'" H3O2 sing N N 299 LMT "O6'" "H6'" sing N N 300 LMT C1 C2 sing N N 301 LMT C1 H12 sing N N 302 LMT C1 H11 sing N N 303 LMT C2 C3 sing N N 304 LMT C2 H22 sing N N 305 LMT C2 H21 sing N N 306 LMT C3 C4 sing N N 307 LMT C3 H32 sing N N 308 LMT C3 H31 sing N N 309 LMT C4 C5 sing N N 310 LMT C4 H42 sing N N 311 LMT C4 H41 sing N N 312 LMT C5 C6 sing N N 313 LMT C5 H52 sing N N 314 LMT C5 H51 sing N N 315 LMT C6 C7 sing N N 316 LMT C6 H62 sing N N 317 LMT C6 H61 sing N N 318 LMT C7 C8 sing N N 319 LMT C7 H72 sing N N 320 LMT C7 H71 sing N N 321 LMT C8 C9 sing N N 322 LMT C8 H82 sing N N 323 LMT C8 H81 sing N N 324 LMT C9 C10 sing N N 325 LMT C9 H92 sing N N 326 LMT C9 H91 sing N N 327 LMT C10 C11 sing N N 328 LMT C10 H102 sing N N 329 LMT C10 H101 sing N N 330 LMT C11 C12 sing N N 331 LMT C11 H112 sing N N 332 LMT C11 H111 sing N N 333 LMT C12 H123 sing N N 334 LMT C12 H122 sing N N 335 LMT C12 H121 sing N N 336 LYS N CA sing N N 337 LYS N H sing N N 338 LYS N H2 sing N N 339 LYS CA C sing N N 340 LYS CA CB sing N N 341 LYS CA HA sing N N 342 LYS C O doub N N 343 LYS C OXT sing N N 344 LYS CB CG sing N N 345 LYS CB HB2 sing N N 346 LYS CB HB3 sing N N 347 LYS CG CD sing N N 348 LYS CG HG2 sing N N 349 LYS CG HG3 sing N N 350 LYS CD CE sing N N 351 LYS CD HD2 sing N N 352 LYS CD HD3 sing N N 353 LYS CE NZ sing N N 354 LYS CE HE2 sing N N 355 LYS CE HE3 sing N N 356 LYS NZ HZ1 sing N N 357 LYS NZ HZ2 sing N N 358 LYS NZ HZ3 sing N N 359 LYS OXT HXT sing N N 360 MET N CA sing N N 361 MET N H sing N N 362 MET N H2 sing N N 363 MET CA C sing N N 364 MET CA CB sing N N 365 MET CA HA sing N N 366 MET C O doub N N 367 MET C OXT sing N N 368 MET CB CG sing N N 369 MET CB HB2 sing N N 370 MET CB HB3 sing N N 371 MET CG SD sing N N 372 MET CG HG2 sing N N 373 MET CG HG3 sing N N 374 MET SD CE sing N N 375 MET CE HE1 sing N N 376 MET CE HE2 sing N N 377 MET CE HE3 sing N N 378 MET OXT HXT sing N N 379 PHE N CA sing N N 380 PHE N H sing N N 381 PHE N H2 sing N N 382 PHE CA C sing N N 383 PHE CA CB sing N N 384 PHE CA HA sing N N 385 PHE C O doub N N 386 PHE C OXT sing N N 387 PHE CB CG sing N N 388 PHE CB HB2 sing N N 389 PHE CB HB3 sing N N 390 PHE CG CD1 doub Y N 391 PHE CG CD2 sing Y N 392 PHE CD1 CE1 sing Y N 393 PHE CD1 HD1 sing N N 394 PHE CD2 CE2 doub Y N 395 PHE CD2 HD2 sing N N 396 PHE CE1 CZ doub Y N 397 PHE CE1 HE1 sing N N 398 PHE CE2 CZ sing Y N 399 PHE CE2 HE2 sing N N 400 PHE CZ HZ sing N N 401 PHE OXT HXT sing N N 402 PRO N CA sing N N 403 PRO N CD sing N N 404 PRO N H sing N N 405 PRO CA C sing N N 406 PRO CA CB sing N N 407 PRO CA HA sing N N 408 PRO C O doub N N 409 PRO C OXT sing N N 410 PRO CB CG sing N N 411 PRO CB HB2 sing N N 412 PRO CB HB3 sing N N 413 PRO CG CD sing N N 414 PRO CG HG2 sing N N 415 PRO CG HG3 sing N N 416 PRO CD HD2 sing N N 417 PRO CD HD3 sing N N 418 PRO OXT HXT sing N N 419 RET C1 C2 sing N N 420 RET C1 C6 sing N N 421 RET C1 C16 sing N N 422 RET C1 C17 sing N N 423 RET C2 C3 sing N N 424 RET C2 H21 sing N N 425 RET C2 H22 sing N N 426 RET C3 C4 sing N N 427 RET C3 H31 sing N N 428 RET C3 H32 sing N N 429 RET C4 C5 sing N N 430 RET C4 H41 sing N N 431 RET C4 H42 sing N N 432 RET C5 C6 doub N N 433 RET C5 C18 sing N N 434 RET C6 C7 sing N N 435 RET C7 C8 doub N E 436 RET C7 H7 sing N N 437 RET C8 C9 sing N N 438 RET C8 H8 sing N N 439 RET C9 C10 doub N E 440 RET C9 C19 sing N N 441 RET C10 C11 sing N N 442 RET C10 H10 sing N N 443 RET C11 C12 doub N E 444 RET C11 H11 sing N N 445 RET C12 C13 sing N N 446 RET C12 H12 sing N N 447 RET C13 C14 doub N E 448 RET C13 C20 sing N N 449 RET C14 C15 sing N N 450 RET C14 H14 sing N N 451 RET C15 O1 doub N N 452 RET C15 H15 sing N N 453 RET C16 H161 sing N N 454 RET C16 H162 sing N N 455 RET C16 H163 sing N N 456 RET C17 H171 sing N N 457 RET C17 H172 sing N N 458 RET C17 H173 sing N N 459 RET C18 H181 sing N N 460 RET C18 H182 sing N N 461 RET C18 H183 sing N N 462 RET C19 H191 sing N N 463 RET C19 H192 sing N N 464 RET C19 H193 sing N N 465 RET C20 H201 sing N N 466 RET C20 H202 sing N N 467 RET C20 H203 sing N N 468 SER N CA sing N N 469 SER N H sing N N 470 SER N H2 sing N N 471 SER CA C sing N N 472 SER CA CB sing N N 473 SER CA HA sing N N 474 SER C O doub N N 475 SER C OXT sing N N 476 SER CB OG sing N N 477 SER CB HB2 sing N N 478 SER CB HB3 sing N N 479 SER OG HG sing N N 480 SER OXT HXT sing N N 481 THR N CA sing N N 482 THR N H sing N N 483 THR N H2 sing N N 484 THR CA C sing N N 485 THR CA CB sing N N 486 THR CA HA sing N N 487 THR C O doub N N 488 THR C OXT sing N N 489 THR CB OG1 sing N N 490 THR CB CG2 sing N N 491 THR CB HB sing N N 492 THR OG1 HG1 sing N N 493 THR CG2 HG21 sing N N 494 THR CG2 HG22 sing N N 495 THR CG2 HG23 sing N N 496 THR OXT HXT sing N N 497 TRP N CA sing N N 498 TRP N H sing N N 499 TRP N H2 sing N N 500 TRP CA C sing N N 501 TRP CA CB sing N N 502 TRP CA HA sing N N 503 TRP C O doub N N 504 TRP C OXT sing N N 505 TRP CB CG sing N N 506 TRP CB HB2 sing N N 507 TRP CB HB3 sing N N 508 TRP CG CD1 doub Y N 509 TRP CG CD2 sing Y N 510 TRP CD1 NE1 sing Y N 511 TRP CD1 HD1 sing N N 512 TRP CD2 CE2 doub Y N 513 TRP CD2 CE3 sing Y N 514 TRP NE1 CE2 sing Y N 515 TRP NE1 HE1 sing N N 516 TRP CE2 CZ2 sing Y N 517 TRP CE3 CZ3 doub Y N 518 TRP CE3 HE3 sing N N 519 TRP CZ2 CH2 doub Y N 520 TRP CZ2 HZ2 sing N N 521 TRP CZ3 CH2 sing Y N 522 TRP CZ3 HZ3 sing N N 523 TRP CH2 HH2 sing N N 524 TRP OXT HXT sing N N 525 TYR N CA sing N N 526 TYR N H sing N N 527 TYR N H2 sing N N 528 TYR CA C sing N N 529 TYR CA CB sing N N 530 TYR CA HA sing N N 531 TYR C O doub N N 532 TYR C OXT sing N N 533 TYR CB CG sing N N 534 TYR CB HB2 sing N N 535 TYR CB HB3 sing N N 536 TYR CG CD1 doub Y N 537 TYR CG CD2 sing Y N 538 TYR CD1 CE1 sing Y N 539 TYR CD1 HD1 sing N N 540 TYR CD2 CE2 doub Y N 541 TYR CD2 HD2 sing N N 542 TYR CE1 CZ doub Y N 543 TYR CE1 HE1 sing N N 544 TYR CE2 CZ sing Y N 545 TYR CE2 HE2 sing N N 546 TYR CZ OH sing N N 547 TYR OH HH sing N N 548 TYR OXT HXT sing N N 549 VAL N CA sing N N 550 VAL N H sing N N 551 VAL N H2 sing N N 552 VAL CA C sing N N 553 VAL CA CB sing N N 554 VAL CA HA sing N N 555 VAL C O doub N N 556 VAL C OXT sing N N 557 VAL CB CG1 sing N N 558 VAL CB CG2 sing N N 559 VAL CB HB sing N N 560 VAL CG1 HG11 sing N N 561 VAL CG1 HG12 sing N N 562 VAL CG1 HG13 sing N N 563 VAL CG2 HG21 sing N N 564 VAL CG2 HG22 sing N N 565 VAL CG2 HG23 sing N N 566 VAL OXT HXT sing N N 567 # _em_admin.current_status REL _em_admin.deposition_date 2025-11-19 _em_admin.deposition_site PDBE _em_admin.entry_id 9TBF _em_admin.last_update 2025-12-17 _em_admin.map_release_date 2025-12-17 _em_admin.title 'Cryo-EM structure of the light-driven sodium pump ErNaR in the monomeric form in the O2 state' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 500 mM NaCl 1 'sodium chloride' 1 10 mM C4H11NO3 2 Tris-HCl 1 0.04 % C24H46O 3 'n-dodecyl-beta-D-maltoside (DDM)' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1041 _em_entity_assembly_naturalsource.organism Erythrobacter _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? cryoSPARC 4.6.0 ? 'MODEL REFINEMENT' ? 2 ? ? ? PHENIX 1.21.2_5419 ? 'IMAGE ACQUISITION' ? 3 ? ? 1 ? ? ? MASKING ? 4 ? ? ? ? ? ? 'CTF CORRECTION' ? 5 1 ? ? cryoSPARC 4.6.0 ? 'LAYERLINE INDEXING' ? 6 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 7 ? ? ? ? ? ? 'MODEL FITTING' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? cryoSPARC 4.6.0 ? # _em_specimen.concentration 4.5 _em_specimen.details 'This sample was monodisperse.' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Swiss National Science Foundation' _pdbx_audit_support.country Switzerland _pdbx_audit_support.grant_number TMCG-2+213773 _pdbx_audit_support.ordinal 1 # _pdbx_related_exp_data_set.data_reference . _pdbx_related_exp_data_set.data_set_type EMPIAR _pdbx_related_exp_data_set.db_source ? _pdbx_related_exp_data_set.details ? _pdbx_related_exp_data_set.metadata_reference 10.6019/EMPIAR-13127 _pdbx_related_exp_data_set.ordinal 1 # _atom_sites.entry_id 9TBF _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #