HEADER RECOMBINATION 25-NOV-25 9TEN TITLE PHIC31 EXCISIVE SYNAPSE: B-BOUND SUBREGION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATTL60_FW; COMPND 3 CHAIN: E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ATTL60_RV; COMPND 7 CHAIN: F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RECOMBINATION DIRECTIONALITY FACTOR; COMPND 11 CHAIN: J; COMPND 12 SYNONYM: RDF,GENE PRODUCT 3,GP3; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: INTEGRASE; COMPND 16 CHAIN: B; COMPND 17 ENGINEERED: YES; COMPND 18 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: LOMOVSKAYAVIRUS C31; SOURCE 4 ORGANISM_TAXID: 10719; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: LOMOVSKAYAVIRUS C31; SOURCE 8 ORGANISM_TAXID: 10719; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: LOMOVSKAYAVIRUS C31; SOURCE 11 ORGANISM_TAXID: 10719; SOURCE 12 GENE: 3, RDF; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: LOMOVSKAYAVIRUS C31; SOURCE 17 ORGANISM_TAXID: 10719; SOURCE 18 GENE: INT; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SERINE INTEGRASE, RECOMBINASE, SITE-SPECIFIC RECOMBINATION, RDF, DNA, KEYWDS 2 RECOMBINATION EXPDTA ELECTRON MICROSCOPY AUTHOR Y.E.SUN,L.SPAGNOLO REVDAT 1 11-FEB-26 9TEN 0 JRNL AUTH Y.E.SUN,L.ASPINALL,A.P.JOSEPH,S.D.COLLOMS,W.M.STARK, JRNL AUTH 2 L.SPAGNOLO JRNL TITL STRUCTURAL MECHANISMS OF UNIDIRECTIONAL PROPHAGE INTEGRATION JRNL TITL 2 AND EXCISION BY SERINE INTEGRASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.110 REMARK 3 NUMBER OF PARTICLES : 115490 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9TEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292152519. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PHIC31 EXCISIVE SYNAPSE: B REMARK 245 -BOUND SUBREGION REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 7611 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6007.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 81000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, J, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA E 1 REMARK 465 DG E 2 REMARK 465 DT E 31 REMARK 465 DG E 32 REMARK 465 DA E 33 REMARK 465 DG E 34 REMARK 465 DT E 35 REMARK 465 DT E 36 REMARK 465 DC E 37 REMARK 465 DT E 38 REMARK 465 DC E 39 REMARK 465 DT E 40 REMARK 465 DC E 41 REMARK 465 DA E 42 REMARK 465 DG E 43 REMARK 465 DT E 44 REMARK 465 DT E 45 REMARK 465 DG E 46 REMARK 465 DG E 47 REMARK 465 DG E 48 REMARK 465 DG E 49 REMARK 465 DG E 50 REMARK 465 DC E 51 REMARK 465 DG E 52 REMARK 465 DT E 53 REMARK 465 DA E 54 REMARK 465 DG E 55 REMARK 465 DG E 56 REMARK 465 DG E 57 REMARK 465 DT E 58 REMARK 465 DC E 59 REMARK 465 DG E 60 REMARK 465 DC F 1 REMARK 465 DG F 2 REMARK 465 DA F 3 REMARK 465 DC F 4 REMARK 465 DC F 5 REMARK 465 DC F 6 REMARK 465 DT F 7 REMARK 465 DA F 8 REMARK 465 DC F 9 REMARK 465 DG F 10 REMARK 465 DC F 11 REMARK 465 DC F 12 REMARK 465 DC F 13 REMARK 465 DC F 14 REMARK 465 DC F 15 REMARK 465 DA F 16 REMARK 465 DA F 17 REMARK 465 DC F 18 REMARK 465 DT F 19 REMARK 465 DG F 20 REMARK 465 DA F 21 REMARK 465 DG F 22 REMARK 465 DA F 23 REMARK 465 DG F 24 REMARK 465 DA F 25 REMARK 465 DA F 26 REMARK 465 DC F 27 REMARK 465 DT F 28 REMARK 465 DC F 29 REMARK 465 DA F 30 REMARK 465 DC F 59 REMARK 465 DT F 60 REMARK 465 MET J -26 REMARK 465 SER J -25 REMARK 465 TYR J -24 REMARK 465 TYR J -23 REMARK 465 HIS J -22 REMARK 465 HIS J -21 REMARK 465 HIS J -20 REMARK 465 HIS J -19 REMARK 465 HIS J -18 REMARK 465 HIS J -17 REMARK 465 ASP J -16 REMARK 465 TYR J -15 REMARK 465 ASP J -14 REMARK 465 ILE J -13 REMARK 465 PRO J -12 REMARK 465 THR J -11 REMARK 465 THR J -10 REMARK 465 GLU J -9 REMARK 465 ASN J -8 REMARK 465 LEU J -7 REMARK 465 TYR J -6 REMARK 465 PHE J -5 REMARK 465 GLN J -4 REMARK 465 GLY J -3 REMARK 465 ALA J -2 REMARK 465 MET J -1 REMARK 465 ALA J 0 REMARK 465 MET J 1 REMARK 465 ALA J 2 REMARK 465 LYS J 3 REMARK 465 ARG J 4 REMARK 465 SER J 5 REMARK 465 ILE J 6 REMARK 465 TRP J 7 REMARK 465 ALA J 8 REMARK 465 GLY J 9 REMARK 465 ASP J 10 REMARK 465 GLU J 11 REMARK 465 ASP J 12 REMARK 465 ASN J 13 REMARK 465 LYS J 14 REMARK 465 PRO J 15 REMARK 465 LYS J 16 REMARK 465 LYS J 17 REMARK 465 ARG J 18 REMARK 465 GLU J 19 REMARK 465 THR J 20 REMARK 465 TYR J 21 REMARK 465 ALA J 22 REMARK 465 ASP J 240 REMARK 465 ALA J 241 REMARK 465 ILE J 242 REMARK 465 ALA J 243 REMARK 465 ASP J 244 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 THR B 3 REMARK 465 TYR B 4 REMARK 465 ALA B 5 REMARK 465 GLY B 6 REMARK 465 ALA B 7 REMARK 465 TYR B 8 REMARK 465 ASP B 9 REMARK 465 ARG B 10 REMARK 465 GLN B 11 REMARK 465 ALA B 12 REMARK 465 ARG B 13 REMARK 465 GLU B 14 REMARK 465 ARG B 15 REMARK 465 GLU B 16 REMARK 465 ASN B 17 REMARK 465 SER B 18 REMARK 465 SER B 19 REMARK 465 ALA B 20 REMARK 465 ALA B 21 REMARK 465 SER B 22 REMARK 465 PRO B 23 REMARK 465 ALA B 24 REMARK 465 THR B 25 REMARK 465 GLN B 26 REMARK 465 ARG B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 GLU B 31 REMARK 465 ASP B 32 REMARK 465 LYS B 33 REMARK 465 ALA B 34 REMARK 465 ALA B 35 REMARK 465 ASP B 36 REMARK 465 LEU B 37 REMARK 465 GLN B 38 REMARK 465 ARG B 39 REMARK 465 GLU B 40 REMARK 465 VAL B 41 REMARK 465 GLU B 42 REMARK 465 ARG B 43 REMARK 465 ASP B 44 REMARK 465 GLY B 45 REMARK 465 GLY B 46 REMARK 465 ARG B 47 REMARK 465 PHE B 48 REMARK 465 ARG B 49 REMARK 465 PHE B 50 REMARK 465 VAL B 51 REMARK 465 GLY B 52 REMARK 465 HIS B 53 REMARK 465 PHE B 54 REMARK 465 SER B 55 REMARK 465 GLU B 56 REMARK 465 ALA B 57 REMARK 465 PRO B 58 REMARK 465 GLY B 59 REMARK 465 THR B 60 REMARK 465 SER B 61 REMARK 465 ALA B 62 REMARK 465 PHE B 63 REMARK 465 GLY B 64 REMARK 465 THR B 65 REMARK 465 ALA B 66 REMARK 465 GLU B 67 REMARK 465 ARG B 68 REMARK 465 PRO B 69 REMARK 465 GLU B 70 REMARK 465 PHE B 71 REMARK 465 GLU B 72 REMARK 465 ARG B 73 REMARK 465 ILE B 74 REMARK 465 LEU B 75 REMARK 465 ASN B 76 REMARK 465 GLU B 77 REMARK 465 CYS B 78 REMARK 465 ARG B 79 REMARK 465 ALA B 80 REMARK 465 GLY B 81 REMARK 465 ARG B 82 REMARK 465 LEU B 83 REMARK 465 ASN B 84 REMARK 465 MET B 85 REMARK 465 ILE B 86 REMARK 465 ILE B 87 REMARK 465 VAL B 88 REMARK 465 TYR B 89 REMARK 465 ASP B 90 REMARK 465 VAL B 91 REMARK 465 SER B 92 REMARK 465 ARG B 93 REMARK 465 PHE B 94 REMARK 465 SER B 95 REMARK 465 ARG B 96 REMARK 465 LEU B 97 REMARK 465 LYS B 98 REMARK 465 VAL B 99 REMARK 465 MET B 100 REMARK 465 ASP B 101 REMARK 465 ALA B 102 REMARK 465 ILE B 103 REMARK 465 PRO B 104 REMARK 465 ILE B 105 REMARK 465 VAL B 106 REMARK 465 SER B 107 REMARK 465 GLU B 108 REMARK 465 LEU B 109 REMARK 465 LEU B 110 REMARK 465 ALA B 111 REMARK 465 LEU B 112 REMARK 465 GLY B 113 REMARK 465 VAL B 114 REMARK 465 THR B 115 REMARK 465 ILE B 116 REMARK 465 VAL B 117 REMARK 465 SER B 118 REMARK 465 THR B 119 REMARK 465 GLN B 120 REMARK 465 GLU B 121 REMARK 465 GLY B 122 REMARK 465 VAL B 123 REMARK 465 PHE B 124 REMARK 465 ARG B 125 REMARK 465 GLN B 126 REMARK 465 GLY B 127 REMARK 465 ASN B 128 REMARK 465 VAL B 129 REMARK 465 MET B 130 REMARK 465 ASP B 131 REMARK 465 LEU B 132 REMARK 465 ILE B 133 REMARK 465 HIS B 134 REMARK 465 LEU B 135 REMARK 465 ILE B 136 REMARK 465 MET B 137 REMARK 465 ARG B 138 REMARK 465 LEU B 139 REMARK 465 THR B 448 REMARK 465 GLU B 449 REMARK 465 ALA B 450 REMARK 465 PRO B 451 REMARK 465 GLU B 452 REMARK 465 LYS B 453 REMARK 465 SER B 454 REMARK 465 GLY B 455 REMARK 465 GLU B 456 REMARK 465 ARG B 457 REMARK 465 ALA B 458 REMARK 465 ASN B 459 REMARK 465 LEU B 460 REMARK 465 VAL B 461 REMARK 465 ALA B 462 REMARK 465 GLU B 463 REMARK 465 ARG B 464 REMARK 465 ALA B 465 REMARK 465 ASP B 466 REMARK 465 ALA B 467 REMARK 465 LEU B 468 REMARK 465 ASN B 469 REMARK 465 ALA B 470 REMARK 465 LEU B 471 REMARK 465 GLU B 472 REMARK 465 GLU B 473 REMARK 465 LEU B 474 REMARK 465 TYR B 475 REMARK 465 GLU B 476 REMARK 465 ASP B 477 REMARK 465 ARG B 478 REMARK 465 ALA B 479 REMARK 465 ALA B 480 REMARK 465 GLY B 481 REMARK 465 ALA B 482 REMARK 465 TYR B 483 REMARK 465 ASP B 484 REMARK 465 GLY B 485 REMARK 465 PRO B 486 REMARK 465 VAL B 487 REMARK 465 GLY B 488 REMARK 465 ARG B 489 REMARK 465 LYS B 490 REMARK 465 HIS B 491 REMARK 465 PHE B 492 REMARK 465 ARG B 493 REMARK 465 LYS B 494 REMARK 465 GLN B 495 REMARK 465 GLN B 496 REMARK 465 ALA B 497 REMARK 465 ALA B 498 REMARK 465 LEU B 499 REMARK 465 THR B 500 REMARK 465 LEU B 501 REMARK 465 ARG B 502 REMARK 465 GLN B 503 REMARK 465 GLN B 504 REMARK 465 GLY B 505 REMARK 465 ALA B 506 REMARK 465 GLU B 507 REMARK 465 GLU B 508 REMARK 465 ARG B 509 REMARK 465 LEU B 510 REMARK 465 ALA B 511 REMARK 465 GLU B 593 REMARK 465 ASP B 594 REMARK 465 ASP B 595 REMARK 465 ALA B 596 REMARK 465 GLN B 597 REMARK 465 ASP B 598 REMARK 465 GLY B 599 REMARK 465 THR B 600 REMARK 465 GLU B 601 REMARK 465 ASP B 602 REMARK 465 VAL B 603 REMARK 465 ALA B 604 REMARK 465 ALA B 605 REMARK 465 THR B 606 REMARK 465 SER B 607 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA F 36 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU J 80 -0.68 67.15 REMARK 500 MET J 220 33.01 -94.04 REMARK 500 LYS B 265 -137.91 52.14 REMARK 500 ALA B 268 -168.76 -78.00 REMARK 500 SER B 269 27.13 48.27 REMARK 500 ALA B 516 50.37 -91.27 REMARK 500 ASP B 524 64.26 -101.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 186 0.25 SIDE CHAIN REMARK 500 ARG B 189 0.10 SIDE CHAIN REMARK 500 ARG B 442 0.17 SIDE CHAIN REMARK 500 ARG B 443 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN J 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS J 115 NE2 REMARK 620 2 CYS J 117 SG 101.4 REMARK 620 3 CYS J 135 SG 109.3 112.3 REMARK 620 4 CYS J 137 SG 111.3 112.3 110.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 366 SG REMARK 620 2 CYS B 368 SG 108.9 REMARK 620 3 CYS B 387 SG 111.5 112.2 REMARK 620 4 HIS B 401 NE2 81.5 116.5 121.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-55829 RELATED DB: EMDB REMARK 900 LOCAL MAP OF THE B-BOUND SUBREGION OF EMD-55829 REMARK 900 RELATED ID: EMD-55830 RELATED DB: EMDB REMARK 900 PHIC31 EXCISIVE SYNAPSE: B-BOUND SUBREGION DBREF 9TEN E 1 60 PDB 9TEN 9TEN 1 60 DBREF 9TEN F 1 60 PDB 9TEN 9TEN 1 60 DBREF 9TEN J 1 244 UNP Q9T216 RDF_BPPHC 1 244 DBREF 9TEN B 1 605 UNP Q9T221 Q9T221_BPPHC 1 605 SEQADV 9TEN MET J -26 UNP Q9T216 INITIATING METHIONINE SEQADV 9TEN SER J -25 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN TYR J -24 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN TYR J -23 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN HIS J -22 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN HIS J -21 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN HIS J -20 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN HIS J -19 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN HIS J -18 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN HIS J -17 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN ASP J -16 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN TYR J -15 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN ASP J -14 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN ILE J -13 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN PRO J -12 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN THR J -11 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN THR J -10 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN GLU J -9 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN ASN J -8 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN LEU J -7 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN TYR J -6 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN PHE J -5 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN GLN J -4 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN GLY J -3 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN ALA J -2 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN MET J -1 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN ALA J 0 UNP Q9T216 EXPRESSION TAG SEQADV 9TEN MET B -19 UNP Q9T221 INITIATING METHIONINE SEQADV 9TEN GLY B -18 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN SER B -17 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN SER B -16 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN HIS B -15 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN HIS B -14 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN HIS B -13 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN HIS B -12 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN HIS B -11 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN HIS B -10 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN SER B -9 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN SER B -8 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN GLY B -7 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN LEU B -6 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN VAL B -5 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN PRO B -4 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN ARG B -3 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN GLY B -2 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN SER B -1 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN HIS B 0 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN ALA B 12 UNP Q9T221 SER 12 ENGINEERED MUTATION SEQADV 9TEN THR B 606 UNP Q9T221 EXPRESSION TAG SEQADV 9TEN SER B 607 UNP Q9T221 EXPRESSION TAG SEQRES 1 E 60 DA DG DC DC DG DC DG DG DT DG DC DG DG SEQRES 2 E 60 DG DT DG DC DC DA DG DG DG DC DG DT DG SEQRES 3 E 60 DC DC DC DT DT DG DA DG DT DT DC DT DC SEQRES 4 E 60 DT DC DA DG DT DT DG DG DG DG DG DC DG SEQRES 5 E 60 DT DA DG DG DG DT DC DG SEQRES 1 F 60 DC DG DA DC DC DC DT DA DC DG DC DC DC SEQRES 2 F 60 DC DC DA DA DC DT DG DA DG DA DG DA DA SEQRES 3 F 60 DC DT DC DA DA DG DG DG DC DA DC DG DC SEQRES 4 F 60 DC DC DT DG DG DC DA DC DC DC DG DC DA SEQRES 5 F 60 DC DC DG DC DG DG DC DT SEQRES 1 J 271 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 J 271 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 J 271 ALA MET ALA LYS ARG SER ILE TRP ALA GLY ASP GLU ASP SEQRES 4 J 271 ASN LYS PRO LYS LYS ARG GLU THR TYR ALA ASP ASP THR SEQRES 5 J 271 VAL GLY ARG PHE HIS SER GLY TYR SER GLU THR ASN GLU SEQRES 6 J 271 ARG GLY LYS VAL VAL PRO VAL ALA LEU ASP LYS TRP ARG SEQRES 7 J 271 ILE SER THR GLY GLU GLN SER VAL ALA ASP ALA VAL ALA SEQRES 8 J 271 GLN LEU PHE GLY GLY THR PRO VAL GLU ASN GLU GLU SER SEQRES 9 J 271 THR SER GLU ASN PHE ILE ASP VAL PHE THR ASP ARG PRO SEQRES 10 J 271 LYS VAL PRO VAL ILE ILE GLU ALA ASP GLY ILE HIS TRP SEQRES 11 J 271 ASP MET LYS LEU TRP LEU ASN GLY LYS LEU LYS HIS HIS SEQRES 12 J 271 CYS ASP GLY PHE ASP PHE VAL SER HIS ALA ASP GLU GLU SEQRES 13 J 271 MET ILE GLY GLN PRO CYS GLY CYS PRO LYS LEU PHE ASP SEQRES 14 J 271 GLU ARG LYS ALA ALA ALA LYS GLU TYR ASP ALA PRO ASN SEQRES 15 J 271 PRO ALA ILE THR VAL THR PHE THR LEU ALA ASP ASP PRO SEQRES 16 J 271 GLU LEU GLY ARG PHE LYS PHE GLN THR GLY SER TRP THR SEQRES 17 J 271 LEU PHE LYS VAL LEU HIS GLU ALA GLU ASP ASP VAL GLU SEQRES 18 J 271 ARG VAL GLY LYS GLY GLY ALA VAL LEU ALA ASN LEU GLU SEQRES 19 J 271 LEU GLU LEU VAL GLU TYR THR PRO LYS ARG GLY PRO MET SEQRES 20 J 271 ARG ASN LYS LEU VAL SER TYR TYR LYS PRO THR ILE THR SEQRES 21 J 271 VAL LEU LYS SER TYR ASN ASP ALA ILE ALA ASP SEQRES 1 B 627 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 627 LEU VAL PRO ARG GLY SER HIS MET ASP THR TYR ALA GLY SEQRES 3 B 627 ALA TYR ASP ARG GLN ALA ARG GLU ARG GLU ASN SER SER SEQRES 4 B 627 ALA ALA SER PRO ALA THR GLN ARG SER ALA ASN GLU ASP SEQRES 5 B 627 LYS ALA ALA ASP LEU GLN ARG GLU VAL GLU ARG ASP GLY SEQRES 6 B 627 GLY ARG PHE ARG PHE VAL GLY HIS PHE SER GLU ALA PRO SEQRES 7 B 627 GLY THR SER ALA PHE GLY THR ALA GLU ARG PRO GLU PHE SEQRES 8 B 627 GLU ARG ILE LEU ASN GLU CYS ARG ALA GLY ARG LEU ASN SEQRES 9 B 627 MET ILE ILE VAL TYR ASP VAL SER ARG PHE SER ARG LEU SEQRES 10 B 627 LYS VAL MET ASP ALA ILE PRO ILE VAL SER GLU LEU LEU SEQRES 11 B 627 ALA LEU GLY VAL THR ILE VAL SER THR GLN GLU GLY VAL SEQRES 12 B 627 PHE ARG GLN GLY ASN VAL MET ASP LEU ILE HIS LEU ILE SEQRES 13 B 627 MET ARG LEU ASP ALA SER HIS LYS GLU SER SER LEU LYS SEQRES 14 B 627 SER ALA LYS ILE LEU ASP THR LYS ASN LEU GLN ARG GLU SEQRES 15 B 627 LEU GLY GLY TYR VAL GLY GLY LYS ALA PRO TYR GLY PHE SEQRES 16 B 627 GLU LEU VAL SER GLU THR LYS GLU ILE THR ARG ASN GLY SEQRES 17 B 627 ARG MET VAL ASN VAL VAL ILE ASN LYS LEU ALA HIS SER SEQRES 18 B 627 THR THR PRO LEU THR GLY PRO PHE GLU PHE GLU PRO ASP SEQRES 19 B 627 VAL ILE ARG TRP TRP TRP ARG GLU ILE LYS THR HIS LYS SEQRES 20 B 627 HIS LEU PRO PHE LYS PRO GLY SER GLN ALA ALA ILE HIS SEQRES 21 B 627 PRO GLY SER ILE THR GLY LEU CYS LYS ARG MET ASP ALA SEQRES 22 B 627 ASP ALA VAL PRO THR ARG GLY GLU THR ILE GLY LYS LYS SEQRES 23 B 627 THR ALA SER SER ALA TRP ASP PRO ALA THR VAL MET ARG SEQRES 24 B 627 ILE LEU ARG ASP PRO ARG ILE ALA GLY PHE ALA ALA GLU SEQRES 25 B 627 VAL ILE TYR LYS LYS LYS PRO ASP GLY THR PRO THR THR SEQRES 26 B 627 LYS ILE GLU GLY TYR ARG ILE GLN ARG ASP PRO ILE THR SEQRES 27 B 627 LEU ARG PRO VAL GLU LEU ASP CYS GLY PRO ILE ILE GLU SEQRES 28 B 627 PRO ALA GLU TRP TYR GLU LEU GLN ALA TRP LEU ASP GLY SEQRES 29 B 627 ARG GLY ARG GLY LYS GLY LEU SER ARG GLY GLN ALA ILE SEQRES 30 B 627 LEU SER ALA MET ASP LYS LEU TYR CYS GLU CYS GLY ALA SEQRES 31 B 627 VAL MET THR SER LYS ARG GLY GLU GLU SER ILE LYS ASP SEQRES 32 B 627 SER TYR ARG CYS ARG ARG ARG LYS VAL VAL ASP PRO SER SEQRES 33 B 627 ALA PRO GLY GLN HIS GLU GLY THR CYS ASN VAL SER MET SEQRES 34 B 627 ALA ALA LEU ASP LYS PHE VAL ALA GLU ARG ILE PHE ASN SEQRES 35 B 627 LYS ILE ARG HIS ALA GLU GLY ASP GLU GLU THR LEU ALA SEQRES 36 B 627 LEU LEU TRP GLU ALA ALA ARG ARG PHE GLY LYS LEU THR SEQRES 37 B 627 GLU ALA PRO GLU LYS SER GLY GLU ARG ALA ASN LEU VAL SEQRES 38 B 627 ALA GLU ARG ALA ASP ALA LEU ASN ALA LEU GLU GLU LEU SEQRES 39 B 627 TYR GLU ASP ARG ALA ALA GLY ALA TYR ASP GLY PRO VAL SEQRES 40 B 627 GLY ARG LYS HIS PHE ARG LYS GLN GLN ALA ALA LEU THR SEQRES 41 B 627 LEU ARG GLN GLN GLY ALA GLU GLU ARG LEU ALA GLU LEU SEQRES 42 B 627 GLU ALA ALA GLU ALA PRO LYS LEU PRO LEU ASP GLN TRP SEQRES 43 B 627 PHE PRO GLU ASP ALA ASP ALA ASP PRO THR GLY PRO LYS SEQRES 44 B 627 SER TRP TRP GLY ARG ALA SER VAL ASP ASP LYS ARG VAL SEQRES 45 B 627 PHE VAL GLY LEU PHE VAL ASP LYS ILE VAL VAL THR LYS SEQRES 46 B 627 SER THR THR GLY ARG GLY GLN GLY THR PRO ILE GLU LYS SEQRES 47 B 627 ARG ALA SER ILE THR TRP ALA LYS PRO PRO THR ASP ASP SEQRES 48 B 627 ASP GLU ASP ASP ALA GLN ASP GLY THR GLU ASP VAL ALA SEQRES 49 B 627 ALA THR SER HET ZN J 301 1 HET ZN B 701 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) HELIX 1 AA1 GLU J 56 GLY J 68 1 13 HELIX 2 AA2 LEU J 140 GLU J 150 1 11 HELIX 3 AA3 ASP J 167 GLY J 171 5 5 HELIX 4 AA4 SER J 179 LYS J 198 1 20 HELIX 5 AA5 ALA B 141 LEU B 163 1 23 HELIX 6 AA6 THR B 185 ARG B 189 5 5 HELIX 7 AA7 PHE B 211 HIS B 226 1 16 HELIX 8 AA8 SER B 243 ASP B 254 1 12 HELIX 9 AA9 THR B 258 GLY B 264 1 7 HELIX 10 AB1 ASP B 273 ASP B 283 1 11 HELIX 11 AB2 GLU B 331 ARG B 345 1 15 HELIX 12 AB3 GLU B 379 LYS B 382 5 4 HELIX 13 AB4 MET B 409 HIS B 426 1 18 HELIX 14 AB5 ASP B 430 PHE B 444 1 15 HELIX 15 AB6 GLU B 514 ALA B 518 5 5 HELIX 16 AB7 PRO B 522 TRP B 526 5 5 HELIX 17 AB8 SER B 540 ALA B 545 1 6 HELIX 18 AB9 SER B 546 PHE B 557 1 12 SHEET 1 AA1 9 VAL J 72 GLU J 73 0 SHEET 2 AA1 9 ILE J 83 PHE J 86 -1 O ASP J 84 N VAL J 72 SHEET 3 AA1 9 VAL J 42 THR J 54 -1 N ILE J 52 O VAL J 85 SHEET 4 AA1 9 GLY J 27 THR J 36 -1 N ARG J 28 O SER J 53 SHEET 5 AA1 9 PHE J 173 THR J 177 1 O LYS J 174 N PHE J 29 SHEET 6 AA1 9 ILE J 158 LEU J 164 -1 N VAL J 160 O PHE J 175 SHEET 7 AA1 9 LYS J 91 TRP J 103 -1 N HIS J 102 O THR J 159 SHEET 8 AA1 9 VAL J 202 TYR J 213 -1 O ALA J 204 N VAL J 94 SHEET 9 AA1 9 VAL J 225 SER J 237 -1 O LEU J 235 N LEU J 203 SHEET 1 AA2 3 MET J 105 LEU J 109 0 SHEET 2 AA2 3 LYS J 112 CYS J 117 -1 O CYS J 117 N MET J 105 SHEET 3 AA2 3 PHE J 122 SER J 124 -1 O VAL J 123 N HIS J 116 SHEET 1 AA3 2 PHE B 175 ILE B 184 0 SHEET 2 AA3 2 VAL B 191 HIS B 200 -1 O VAL B 191 N ILE B 184 SHEET 1 AA4 2 ALA B 291 LYS B 297 0 SHEET 2 AA4 2 PRO B 303 ILE B 312 -1 O ARG B 311 N GLU B 292 SHEET 1 AA5 3 LEU B 364 CYS B 366 0 SHEET 2 AA5 3 VAL B 558 VAL B 563 1 O ILE B 561 N TYR B 365 SHEET 3 AA5 3 ALA B 580 TRP B 584 -1 O THR B 583 N LYS B 560 SHEET 1 AA6 3 MET B 372 LYS B 375 0 SHEET 2 AA6 3 SER B 384 CYS B 387 -1 O SER B 384 N LYS B 375 SHEET 3 AA6 3 VAL B 407 SER B 408 -1 O VAL B 407 N TYR B 385 LINK NE2 HIS J 115 ZN ZN J 301 1555 1555 2.08 LINK SG CYS J 117 ZN ZN J 301 1555 1555 2.32 LINK SG CYS J 135 ZN ZN J 301 1555 1555 2.32 LINK SG CYS J 137 ZN ZN J 301 1555 1555 2.31 LINK SG CYS B 366 ZN ZN B 701 1555 1555 2.31 LINK SG CYS B 368 ZN ZN B 701 1555 1555 2.32 LINK SG CYS B 387 ZN ZN B 701 1555 1555 2.32 LINK NE2 HIS B 401 ZN ZN B 701 1555 1555 2.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1883 5909 CONECT 1899 5909 CONECT 2037 5909 CONECT 2047 5909 CONECT 4640 5910 CONECT 4655 5910 CONECT 4800 5910 CONECT 4912 5910 CONECT 5909 1883 1899 2037 2047 CONECT 5910 4640 4655 4800 4912 MASTER 550 0 2 18 22 0 0 6 5906 4 10 80 END