HEADER TRANSFERASE 27-NOV-25 9TF9 TITLE PDGFRA-G680R MUTANT KINASE DOMAIN IN COMPLEX WITH AVAPRITINIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET-DERIVED GROWTH FACTOR RECEPTOR ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PDGF-R-ALPHA,PDGFR-ALPHA,ALPHA PLATELET-DERIVED GROWTH COMPND 5 FACTOR RECEPTOR,ALPHA-TYPE PLATELET-DERIVED GROWTH FACTOR RECEPTOR, COMPND 6 CD140 ANTIGEN-LIKE FAMILY MEMBER A,CD140A ANTIGEN,PLATELET-DERIVED COMPND 7 GROWTH FACTOR ALPHA RECEPTOR,PLATELET-DERIVED GROWTH FACTOR RECEPTOR COMPND 8 2,PDGFR-2; COMPND 9 EC: 2.7.10.1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDGFRA, PDGFR2, RHEPDGFRA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS PDGFRA PROTEIN KINASE, INHIBITOR, TYROSINE KINASE, TRANSMEMBRANE KEYWDS 2 RECEPTOR, PLATELET-DERIVED GROWTH FACTOR RECEPTOR ALPHA, PDGF, KEYWDS 3 PLATELET-DERIVED GROWTH FACTOR, GIST, GASTROINTESTINAL STROMAL KEYWDS 4 TUMORS, SOLVENT-FRONT MUTANT, P16234, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SCRIMA,M.P.MUELLER,D.RAUH REVDAT 1 15-JUL-26 9TF9 0 JRNL AUTH T.SCHULZ,M.BEERBAUM,A.SCRIMA,H.JANTZEN,A.TEUBER, JRNL AUTH 2 T.MUEHLENBERG,F.GARCIA-FOSSA,J.WEISNER,M.P.MUELLER, JRNL AUTH 3 S.SIEVERS,S.BAUER,D.RAUH JRNL TITL STRUCTURE-BASED SCAFFOLD HOPPING REVEALS STRATEGIES TO JRNL TITL 2 OVERCOME ONCOGENIC KIT AND PDGFRA MUTATION-DRIVEN JRNL TITL 3 DRUG-RESISTANCE IN GIST JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.2_5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 20542 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7700 - 4.2100 1.00 2957 156 0.1680 0.2285 REMARK 3 2 4.2100 - 3.3400 1.00 2799 148 0.1708 0.2136 REMARK 3 3 3.3400 - 2.9200 1.00 2761 145 0.2071 0.2458 REMARK 3 4 2.9200 - 2.6500 1.00 2774 146 0.2125 0.2866 REMARK 3 5 2.6500 - 2.4600 1.00 2759 145 0.2421 0.2562 REMARK 3 6 2.4600 - 2.3200 1.00 2725 144 0.2416 0.3133 REMARK 3 7 2.3200 - 2.2000 1.00 2739 144 0.2617 0.2882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.879 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 53.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2629 REMARK 3 ANGLE : 0.881 3586 REMARK 3 CHIRALITY : 0.054 391 REMARK 3 PLANARITY : 0.007 449 REMARK 3 DIHEDRAL : 15.278 920 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 555 THROUGH 583 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3964 27.9500 -0.8195 REMARK 3 T TENSOR REMARK 3 T11: 0.8049 T22: 0.6518 REMARK 3 T33: 0.5723 T12: 0.1536 REMARK 3 T13: 0.1437 T23: 0.0989 REMARK 3 L TENSOR REMARK 3 L11: 6.7009 L22: 1.5378 REMARK 3 L33: 1.0698 L12: 1.8718 REMARK 3 L13: -1.2753 L23: 0.5850 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: 1.2541 S13: 0.4940 REMARK 3 S21: -0.8314 S22: -0.2100 S23: -0.7640 REMARK 3 S31: -0.0142 S32: 0.5431 S33: 0.2701 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 584 THROUGH 834 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1802 0.6657 9.0617 REMARK 3 T TENSOR REMARK 3 T11: 0.3085 T22: 0.3485 REMARK 3 T33: 0.4360 T12: -0.0552 REMARK 3 T13: 0.0059 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 1.9244 L22: 2.9173 REMARK 3 L33: 7.3269 L12: -0.2805 REMARK 3 L13: -0.7957 L23: 0.4111 REMARK 3 S TENSOR REMARK 3 S11: -0.1827 S12: 0.0577 S13: -0.3222 REMARK 3 S21: 0.1589 S22: -0.0575 S23: -0.0569 REMARK 3 S31: 0.4947 S32: -0.3954 S33: 0.2387 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 835 THROUGH 972 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8901 4.3341 -9.3497 REMARK 3 T TENSOR REMARK 3 T11: 0.4423 T22: 0.3694 REMARK 3 T33: 0.3219 T12: 0.0175 REMARK 3 T13: -0.0649 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 5.1790 L22: 2.9863 REMARK 3 L33: 4.9415 L12: 0.3898 REMARK 3 L13: -1.7709 L23: -0.1954 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.1231 S13: 0.0144 REMARK 3 S21: -0.1297 S22: -0.0517 S23: 0.2060 REMARK 3 S31: -0.0705 S32: -0.7750 S33: 0.0739 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9TF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292152296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X CDTE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20548 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6% PEG3350, 200 MM KCL, 100 MM TRIS PH REMARK 280 7.5; 293.15 K (CRYOPROTECTANT: ETHYLENE GLYCOL), VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.31000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.03500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.03500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.31000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 547 REMARK 465 GLY A 548 REMARK 465 ARG A 549 REMARK 465 LYS A 550 REMARK 465 GLN A 551 REMARK 465 LYS A 552 REMARK 465 PRO A 553 REMARK 465 ARG A 554 REMARK 465 LYS A 769 REMARK 465 LYS A 770 REMARK 465 LYS A 771 REMARK 465 SER A 772 REMARK 465 MET A 773 REMARK 465 LEU A 774 REMARK 465 ASP A 775 REMARK 465 SER A 776 REMARK 465 GLU A 777 REMARK 465 VAL A 778 REMARK 465 LYS A 779 REMARK 465 ASN A 780 REMARK 465 LEU A 781 REMARK 465 LEU A 782 REMARK 465 SER A 783 REMARK 465 ASP A 784 REMARK 465 ASP A 785 REMARK 465 ASN A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 GLY A 789 REMARK 465 ASP A 973 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 557 CG1 CG2 CD1 REMARK 470 ARG A 558 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 561 CG1 CG2 REMARK 470 ILE A 562 CG1 CG2 CD1 REMARK 470 GLU A 563 CG CD OE1 OE2 REMARK 470 SER A 564 OG REMARK 470 ILE A 565 CG1 CG2 CD1 REMARK 470 SER A 566 OG REMARK 470 ARG A 617 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 634 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 638 CG CD CE NZ REMARK 470 GLN A 639 CG CD OE1 NE2 REMARK 470 LYS A 666 CG CD CE NZ REMARK 470 LYS A 688 CG CD CE NZ REMARK 470 SER A 692 OG REMARK 470 HIS A 696 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 828 CG CD OE1 NE2 REMARK 470 ASP A 842 CG OD1 OD2 REMARK 470 TYR A 849 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 VAL A 850 CG1 CG2 REMARK 470 SER A 851 OG REMARK 470 LYS A 852 CG CD CE NZ REMARK 470 MET A 900 CG SD CE REMARK 470 SER A 923 OG REMARK 470 GLU A 936 CG CD OE1 OE2 REMARK 470 GLU A 938 CG CD OE1 OE2 REMARK 470 GLN A 957 CG CD OE1 NE2 REMARK 470 LYS A 960 CG CD CE NZ REMARK 470 LYS A 964 CG CD CE NZ REMARK 470 LEU A 967 CG CD1 CD2 REMARK 470 LYS A 971 CG CD CE NZ REMARK 470 SER A 972 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 567 -177.28 -63.45 REMARK 500 ASP A 568 52.68 -106.25 REMARK 500 ARG A 680 -152.56 64.78 REMARK 500 ASP A 818 40.34 -141.90 REMARK 500 ASP A 836 83.38 56.85 REMARK 500 LYS A 852 105.75 -55.17 REMARK 500 REMARK 500 REMARK: NULL DBREF 9TF9 A 550 973 UNP P16234 PGFRA_HUMAN 550 973 SEQADV 9TF9 GLY A 547 UNP P16234 EXPRESSION TAG SEQADV 9TF9 GLY A 548 UNP P16234 EXPRESSION TAG SEQADV 9TF9 ARG A 549 UNP P16234 EXPRESSION TAG SEQADV 9TF9 ARG A 680 UNP P16234 GLY 680 ENGINEERED MUTATION SEQADV 9TF9 A UNP P16234 HIS 697 DELETION SEQADV 9TF9 A UNP P16234 PRO 698 DELETION SEQADV 9TF9 A UNP P16234 GLU 699 DELETION SEQADV 9TF9 A UNP P16234 LYS 700 DELETION SEQADV 9TF9 A UNP P16234 PRO 701 DELETION SEQADV 9TF9 A UNP P16234 LYS 702 DELETION SEQADV 9TF9 A UNP P16234 LYS 703 DELETION SEQADV 9TF9 A UNP P16234 GLU 704 DELETION SEQADV 9TF9 A UNP P16234 LEU 705 DELETION SEQADV 9TF9 A UNP P16234 ASP 706 DELETION SEQADV 9TF9 A UNP P16234 ILE 707 DELETION SEQADV 9TF9 A UNP P16234 PHE 708 DELETION SEQADV 9TF9 A UNP P16234 GLY 709 DELETION SEQADV 9TF9 A UNP P16234 LEU 710 DELETION SEQADV 9TF9 A UNP P16234 ASN 711 DELETION SEQADV 9TF9 A UNP P16234 PRO 712 DELETION SEQADV 9TF9 A UNP P16234 ALA 713 DELETION SEQADV 9TF9 A UNP P16234 ASP 714 DELETION SEQADV 9TF9 A UNP P16234 GLU 715 DELETION SEQADV 9TF9 A UNP P16234 SER 716 DELETION SEQADV 9TF9 A UNP P16234 THR 717 DELETION SEQADV 9TF9 A UNP P16234 ARG 718 DELETION SEQADV 9TF9 A UNP P16234 SER 719 DELETION SEQADV 9TF9 A UNP P16234 TYR 720 DELETION SEQADV 9TF9 A UNP P16234 VAL 721 DELETION SEQADV 9TF9 A UNP P16234 ILE 722 DELETION SEQADV 9TF9 A UNP P16234 LEU 723 DELETION SEQADV 9TF9 A UNP P16234 SER 724 DELETION SEQADV 9TF9 A UNP P16234 PHE 725 DELETION SEQADV 9TF9 A UNP P16234 GLU 726 DELETION SEQADV 9TF9 A UNP P16234 ASN 727 DELETION SEQADV 9TF9 A UNP P16234 ASN 728 DELETION SEQADV 9TF9 A UNP P16234 GLY 729 DELETION SEQADV 9TF9 A UNP P16234 ASP 730 DELETION SEQADV 9TF9 A UNP P16234 TYR 731 DELETION SEQADV 9TF9 A UNP P16234 MET 732 DELETION SEQADV 9TF9 A UNP P16234 ASP 733 DELETION SEQADV 9TF9 A UNP P16234 MET 734 DELETION SEQADV 9TF9 A UNP P16234 LYS 735 DELETION SEQADV 9TF9 A UNP P16234 GLN 736 DELETION SEQADV 9TF9 A UNP P16234 ALA 737 DELETION SEQADV 9TF9 A UNP P16234 ASP 738 DELETION SEQADV 9TF9 A UNP P16234 THR 739 DELETION SEQADV 9TF9 A UNP P16234 THR 740 DELETION SEQADV 9TF9 A UNP P16234 GLN 741 DELETION SEQADV 9TF9 A UNP P16234 TYR 742 DELETION SEQADV 9TF9 A UNP P16234 VAL 743 DELETION SEQADV 9TF9 A UNP P16234 PRO 744 DELETION SEQADV 9TF9 A UNP P16234 MET 745 DELETION SEQADV 9TF9 A UNP P16234 LEU 746 DELETION SEQADV 9TF9 A UNP P16234 GLU 747 DELETION SEQADV 9TF9 A UNP P16234 ARG 748 DELETION SEQADV 9TF9 A UNP P16234 LYS 749 DELETION SEQADV 9TF9 A UNP P16234 GLU 750 DELETION SEQADV 9TF9 A UNP P16234 VAL 751 DELETION SEQADV 9TF9 A UNP P16234 SER 752 DELETION SEQADV 9TF9 A UNP P16234 LYS 753 DELETION SEQADV 9TF9 A UNP P16234 TYR 754 DELETION SEQADV 9TF9 A UNP P16234 SER 755 DELETION SEQADV 9TF9 A UNP P16234 ASP 756 DELETION SEQADV 9TF9 A UNP P16234 ILE 757 DELETION SEQADV 9TF9 A UNP P16234 GLN 758 DELETION SEQADV 9TF9 A UNP P16234 ARG 759 DELETION SEQADV 9TF9 A UNP P16234 SER 760 DELETION SEQADV 9TF9 A UNP P16234 LEU 761 DELETION SEQADV 9TF9 A UNP P16234 TYR 762 DELETION SEQADV 9TF9 A UNP P16234 ASP 763 DELETION SEQADV 9TF9 A UNP P16234 ARG 764 DELETION SEQADV 9TF9 A UNP P16234 PRO 765 DELETION SEQADV 9TF9 A UNP P16234 ALA 766 DELETION SEQADV 9TF9 A UNP P16234 SER 767 DELETION SEQADV 9TF9 A UNP P16234 TYR 768 DELETION SEQRES 1 A 355 GLY GLY ARG LYS GLN LYS PRO ARG TYR GLU ILE ARG TRP SEQRES 2 A 355 ARG VAL ILE GLU SER ILE SER PRO ASP GLY HIS GLU TYR SEQRES 3 A 355 ILE TYR VAL ASP PRO MET GLN LEU PRO TYR ASP SER ARG SEQRES 4 A 355 TRP GLU PHE PRO ARG ASP GLY LEU VAL LEU GLY ARG VAL SEQRES 5 A 355 LEU GLY SER GLY ALA PHE GLY LYS VAL VAL GLU GLY THR SEQRES 6 A 355 ALA TYR GLY LEU SER ARG SER GLN PRO VAL MET LYS VAL SEQRES 7 A 355 ALA VAL LYS MET LEU LYS PRO THR ALA ARG SER SER GLU SEQRES 8 A 355 LYS GLN ALA LEU MET SER GLU LEU LYS ILE MET THR HIS SEQRES 9 A 355 LEU GLY PRO HIS LEU ASN ILE VAL ASN LEU LEU GLY ALA SEQRES 10 A 355 CYS THR LYS SER GLY PRO ILE TYR ILE ILE THR GLU TYR SEQRES 11 A 355 CYS PHE TYR ARG ASP LEU VAL ASN TYR LEU HIS LYS ASN SEQRES 12 A 355 ARG ASP SER PHE LEU SER HIS LYS LYS LYS SER MET LEU SEQRES 13 A 355 ASP SER GLU VAL LYS ASN LEU LEU SER ASP ASP ASN SER SEQRES 14 A 355 GLU GLY LEU THR LEU LEU ASP LEU LEU SER PHE THR TYR SEQRES 15 A 355 GLN VAL ALA ARG GLY MET GLU PHE LEU ALA SER LYS ASN SEQRES 16 A 355 CYS VAL HIS ARG ASP LEU ALA ALA ARG ASN VAL LEU LEU SEQRES 17 A 355 ALA GLN GLY LYS ILE VAL LYS ILE CYS ASP PHE GLY LEU SEQRES 18 A 355 ALA ARG ASP ILE MET HIS ASP SER ASN TYR VAL SER LYS SEQRES 19 A 355 GLY SER THR PHE LEU PRO VAL LYS TRP MET ALA PRO GLU SEQRES 20 A 355 SER ILE PHE ASP ASN LEU TYR THR THR LEU SER ASP VAL SEQRES 21 A 355 TRP SER TYR GLY ILE LEU LEU TRP GLU ILE PHE SER LEU SEQRES 22 A 355 GLY GLY THR PRO TYR PRO GLY MET MET VAL ASP SER THR SEQRES 23 A 355 PHE TYR ASN LYS ILE LYS SER GLY TYR ARG MET ALA LYS SEQRES 24 A 355 PRO ASP HIS ALA THR SER GLU VAL TYR GLU ILE MET VAL SEQRES 25 A 355 LYS CYS TRP ASN SER GLU PRO GLU LYS ARG PRO SER PHE SEQRES 26 A 355 TYR HIS LEU SER GLU ILE VAL GLU ASN LEU LEU PRO GLY SEQRES 27 A 355 GLN TYR LYS LYS SER TYR GLU LYS ILE HIS LEU ASP PHE SEQRES 28 A 355 LEU LYS SER ASP HET 9JI A1001 37 HETNAM 9JI AVAPRITINIB HETSYN 9JI (1~{S})-1-(4-FLUOROPHENYL)-1-[2-[4-[6-(1-METHYLPYRAZOL- HETSYN 2 9JI 4-YL)PYRROLO[2,1-F][1,2,4]TRIAZIN-4-YL]PIPERAZIN-1- HETSYN 3 9JI YL]PYRIMIDIN-5-YL]ETHANAMINE FORMUL 2 9JI C26 H27 F N10 FORMUL 3 HOH *85(H2 O) HELIX 1 AA1 ILE A 557 VAL A 561 5 5 HELIX 2 AA2 ASP A 583 GLU A 587 5 5 HELIX 3 AA3 PRO A 589 ASP A 591 5 3 HELIX 4 AA4 ARG A 634 GLY A 652 1 19 HELIX 5 AA5 ASP A 681 ASN A 689 1 9 HELIX 6 AA6 ASN A 689 HIS A 696 1 8 HELIX 7 AA7 THR A 791 LYS A 812 1 22 HELIX 8 AA8 ALA A 820 ARG A 822 5 3 HELIX 9 AA9 PRO A 858 MET A 862 5 5 HELIX 10 AB1 ALA A 863 ASN A 870 1 8 HELIX 11 AB2 THR A 873 SER A 890 1 18 HELIX 12 AB3 ASP A 902 SER A 911 1 10 HELIX 13 AB4 THR A 922 TRP A 933 1 12 HELIX 14 AB5 GLU A 936 ARG A 940 5 5 HELIX 15 AB6 SER A 942 LEU A 953 1 12 HELIX 16 AB7 PRO A 955 SER A 972 1 18 SHEET 1 AA1 5 LEU A 593 SER A 601 0 SHEET 2 AA1 5 GLY A 605 TYR A 613 -1 O VAL A 607 N LEU A 599 SHEET 3 AA1 5 VAL A 621 LEU A 629 -1 O VAL A 624 N GLY A 610 SHEET 4 AA1 5 TYR A 671 GLU A 675 -1 O ILE A 672 N LYS A 627 SHEET 5 AA1 5 LEU A 660 CYS A 664 -1 N LEU A 661 O ILE A 673 SHEET 1 AA2 2 CYS A 814 VAL A 815 0 SHEET 2 AA2 2 ARG A 841 ASP A 842 -1 O ARG A 841 N VAL A 815 SHEET 1 AA3 2 VAL A 824 ALA A 827 0 SHEET 2 AA3 2 ILE A 831 ILE A 834 -1 O LYS A 833 N LEU A 825 CRYST1 52.620 72.910 102.070 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013716 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009797 0.00000 CONECT 2518 2519 2546 CONECT 2519 2518 2520 2544 CONECT 2520 2519 2521 2543 CONECT 2521 2520 2547 CONECT 2522 2523 2543 2547 CONECT 2523 2522 2548 2553 CONECT 2524 2525 2544 2546 CONECT 2525 2524 CONECT 2526 2527 2550 CONECT 2527 2526 2531 2539 CONECT 2528 2529 2548 CONECT 2529 2528 2549 CONECT 2530 2549 2550 2552 CONECT 2531 2527 2532 2533 2551 CONECT 2532 2531 CONECT 2533 2531 2534 2538 CONECT 2534 2533 2535 CONECT 2535 2534 2536 CONECT 2536 2535 2537 2545 CONECT 2537 2536 2538 CONECT 2538 2533 2537 CONECT 2539 2527 2552 CONECT 2540 2541 2549 CONECT 2541 2540 2548 CONECT 2542 2553 2554 CONECT 2543 2520 2522 CONECT 2544 2519 2524 CONECT 2545 2536 CONECT 2546 2518 2524 CONECT 2547 2521 2522 2554 CONECT 2548 2523 2528 2541 CONECT 2549 2529 2530 2540 CONECT 2550 2526 2530 CONECT 2551 2531 CONECT 2552 2530 2539 CONECT 2553 2523 2542 CONECT 2554 2542 2547 MASTER 338 0 1 16 9 0 0 6 2624 1 37 28 END