HEADER PLANT PROTEIN 27-NOV-25 9TFO TITLE COMPLEX OF BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PBY2 WITH THE TITLE 2 INTEGRATED HMA DOMAIN OF RMO2 FROM BARLEY COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRATED HMA DOMAIN OF RMO2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PBY2 EFFECTOR; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HORDEUM VULGARE; SOURCE 3 ORGANISM_TAXID: 4513; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 8 ORGANISM_TAXID: 318829; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HMA DOMAIN, EFFECTOR, TANDEM KINASE PROTEIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.S.YU,M.J.BANFIELD REVDAT 1 19-AUG-26 9TFO 0 JRNL AUTH D.S.YU,M.J.BANFIELD JRNL TITL STRUCTURE OF THE INTEGRATED HMA DOMAIN FROM TKPS IN COMPLEX JRNL TITL 2 WITH MAGNAPORTHE ORYZAE EFFECTORS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1465 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : 1.11000 REMARK 3 B33 (A**2) : -3.59000 REMARK 3 B12 (A**2) : 0.55000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.200 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.352 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2148 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2897 ; 2.679 ; 1.832 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ;11.534 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ;11.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 412 ;17.255 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1530 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1096 ; 5.341 ; 4.079 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1363 ; 6.784 ; 7.277 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 6.615 ; 4.431 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3130 ;10.443 ;41.880 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 34.869 -12.815 10.198 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.4051 REMARK 3 T33: 0.1403 T12: 0.1025 REMARK 3 T13: -0.1362 T23: -0.1910 REMARK 3 L TENSOR REMARK 3 L11: 5.3953 L22: 5.2188 REMARK 3 L33: 6.2540 L12: -0.3572 REMARK 3 L13: 1.4453 L23: -2.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.2236 S12: -0.7500 S13: 0.2763 REMARK 3 S21: 0.6382 S22: -0.0999 S23: -0.1559 REMARK 3 S31: -0.7503 S32: -0.4552 S33: 0.3234 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): 36.512 10.834 -6.930 REMARK 3 T TENSOR REMARK 3 T11: 0.2719 T22: 0.2286 REMARK 3 T33: 0.3943 T12: 0.0091 REMARK 3 T13: 0.1048 T23: -0.2250 REMARK 3 L TENSOR REMARK 3 L11: 6.5797 L22: 7.2024 REMARK 3 L33: 7.2731 L12: 0.5976 REMARK 3 L13: -0.6902 L23: 1.8242 REMARK 3 S TENSOR REMARK 3 S11: 0.2178 S12: -0.2937 S13: 0.4399 REMARK 3 S21: -0.0657 S22: 0.3051 S23: -0.8221 REMARK 3 S31: -0.6272 S32: 0.7478 S33: -0.5229 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 24 C 84 REMARK 3 RESIDUE RANGE : C 101 C 101 REMARK 3 ORIGIN FOR THE GROUP (A): 21.062 -17.257 0.369 REMARK 3 T TENSOR REMARK 3 T11: 0.0640 T22: 0.4756 REMARK 3 T33: 0.1536 T12: 0.1516 REMARK 3 T13: -0.0271 T23: -0.1246 REMARK 3 L TENSOR REMARK 3 L11: 5.1349 L22: 6.3302 REMARK 3 L33: 5.1771 L12: 2.9187 REMARK 3 L13: 0.2425 L23: 0.3917 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: -0.6763 S13: 0.2129 REMARK 3 S21: 0.2220 S22: -0.1342 S23: 0.6873 REMARK 3 S31: -0.3295 S32: -1.0833 S33: 0.1389 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 22 D 85 REMARK 3 ORIGIN FOR THE GROUP (A): 37.285 -3.480 -16.733 REMARK 3 T TENSOR REMARK 3 T11: 0.1397 T22: 0.1818 REMARK 3 T33: 0.2275 T12: 0.0505 REMARK 3 T13: 0.0335 T23: -0.1631 REMARK 3 L TENSOR REMARK 3 L11: 4.1834 L22: 4.6933 REMARK 3 L33: 8.6016 L12: 0.0622 REMARK 3 L13: -0.1906 L23: -0.7950 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.1750 S13: 0.2721 REMARK 3 S21: -0.2488 S22: 0.2314 S23: -0.6612 REMARK 3 S31: -0.3521 S32: 0.4586 S33: -0.3033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9TFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292152356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953731 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21089 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 89.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 21.10 REMARK 200 R MERGE FOR SHELL (I) : 0.93100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.69600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.39200 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 59.39200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.69600 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY C 18 REMARK 465 PRO C 19 REMARK 465 MET C 20 REMARK 465 LYS C 21 REMARK 465 LYS C 22 REMARK 465 PRO C 23 REMARK 465 GLN C 85 REMARK 465 GLY D 18 REMARK 465 PRO D 19 REMARK 465 MET D 20 REMARK 465 LYS D 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND1 HIS D 52 O HOH D 101 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER D 35 CA SER D 35 CB -0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 7 CB - CA - C ANGL. DEV. = -17.7 DEGREES REMARK 500 MET A 7 CG - SD - CE ANGL. DEV. = 13.5 DEGREES REMARK 500 VAL A 46 N - CA - CB ANGL. DEV. = -14.3 DEGREES REMARK 500 LYS A 76 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG C 32 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 32 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG D 32 CG - CD - NE ANGL. DEV. = -23.9 DEGREES REMARK 500 ARG D 32 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 SER D 35 N - CA - CB ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 63 78.08 -118.22 REMARK 500 SER B 75 147.90 -28.79 REMARK 500 SER C 51 11.51 -143.77 REMARK 500 SER D 51 37.12 -147.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER D 69 PRO D 70 43.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 60 0.09 SIDE CHAIN REMARK 500 ARG D 37 0.12 SIDE CHAIN REMARK 500 ARG D 71 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER D 69 14.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 9TFO A 1 77 PDB 9TFO 9TFO 1 77 DBREF 9TFO B 1 77 PDB 9TFO 9TFO 1 77 DBREF 9TFO C 18 85 PDB 9TFO 9TFO 18 85 DBREF 9TFO D 18 85 PDB 9TFO 9TFO 18 85 SEQRES 1 A 77 MET ALA ALA ALA SER LYS MET VAL LEU LYS ALA GLU LEU SEQRES 2 A 77 LYS ASP ASP LYS GLN LYS VAL LYS ALA VAL LYS ALA LEU SEQRES 3 A 77 SER VAL LEU HIS GLY ILE ASP GLN ILE SER VAL ASP MET SEQRES 4 A 77 LYS HIS GLY LYS ILE THR VAL VAL GLY VAL VAL ASP PRO SEQRES 5 A 77 VAL ASP VAL VAL ALA ARG MET ARG LYS LEU PHE PRO ASN SEQRES 6 A 77 ALA GLN ILE LEU ALA VAL GLY PRO ALA SER LYS TYR SEQRES 1 B 77 MET ALA ALA ALA SER LYS MET VAL LEU LYS ALA GLU LEU SEQRES 2 B 77 LYS ASP ASP LYS GLN LYS VAL LYS ALA VAL LYS ALA LEU SEQRES 3 B 77 SER VAL LEU HIS GLY ILE ASP GLN ILE SER VAL ASP MET SEQRES 4 B 77 LYS HIS GLY LYS ILE THR VAL VAL GLY VAL VAL ASP PRO SEQRES 5 B 77 VAL ASP VAL VAL ALA ARG MET ARG LYS LEU PHE PRO ASN SEQRES 6 B 77 ALA GLN ILE LEU ALA VAL GLY PRO ALA SER LYS TYR SEQRES 1 C 68 GLY PRO MET LYS LYS PRO GLU GLU TRP CYS TYR THR THR SEQRES 2 C 68 ILE ARG ASN PRO SER GLY ARG LEU ILE TYR ASP GLU LYS SEQRES 3 C 68 ALA GLN PRO LYS SER ILE ILE SER HIS ILE THR ASN LEU SEQRES 4 C 68 LYS VAL ILE VAL LYS ALA ASN CYS ALA VAL SER CYS SER SEQRES 5 C 68 PRO ARG ASP CYS ARG GLY TYR GLU VAL GLY SER THR GLN SEQRES 6 C 68 VAL GLU GLN SEQRES 1 D 68 GLY PRO MET LYS LYS PRO GLU GLU TRP CYS TYR THR THR SEQRES 2 D 68 ILE ARG ASN PRO SER GLY ARG LEU ILE TYR ASP GLU LYS SEQRES 3 D 68 ALA GLN PRO LYS SER ILE ILE SER HIS ILE THR ASN LEU SEQRES 4 D 68 LYS VAL ILE VAL LYS ALA ASN CYS ALA VAL SER CYS SER SEQRES 5 D 68 PRO ARG ASP CYS ARG GLY TYR GLU VAL GLY SER THR GLN SEQRES 6 D 68 VAL GLU GLN HET SO4 A 101 5 HET EDO C 101 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 SO4 O4 S 2- FORMUL 6 EDO C2 H6 O2 FORMUL 7 HOH *65(H2 O) HELIX 1 AA1 ASP A 15 VAL A 28 1 14 HELIX 2 AA2 ASP A 51 LYS A 61 1 11 HELIX 3 AA3 ASP B 15 VAL B 28 1 14 HELIX 4 AA4 ASP B 51 PHE B 63 1 13 HELIX 5 AA5 ALA C 62 CYS C 64 5 3 HELIX 6 AA6 ASP C 72 TYR C 76 5 5 HELIX 7 AA7 ALA D 62 CYS D 64 5 3 HELIX 8 AA8 ASP D 72 TYR D 76 5 5 SHEET 1 AA1 7 GLN A 67 PRO A 73 0 SHEET 2 AA1 7 SER A 5 LYS A 10 -1 N VAL A 8 O LEU A 69 SHEET 3 AA1 7 LYS A 43 GLY A 48 -1 O ILE A 44 N LEU A 9 SHEET 4 AA1 7 ILE A 32 ASP A 38 -1 N ASP A 38 O LYS A 43 SHEET 5 AA1 7 LEU C 38 ALA C 44 1 O ASP C 41 N VAL A 37 SHEET 6 AA1 7 TRP C 26 ARG C 32 -1 N CYS C 27 O ALA C 44 SHEET 7 AA1 7 GLU C 77 VAL C 83 -1 O VAL C 83 N TRP C 26 SHEET 1 AA2 7 GLN B 67 PRO B 73 0 SHEET 2 AA2 7 SER B 5 LYS B 10 -1 N VAL B 8 O LEU B 69 SHEET 3 AA2 7 LYS B 43 GLY B 48 -1 O ILE B 44 N LEU B 9 SHEET 4 AA2 7 ILE B 32 ASP B 38 -1 N ASP B 38 O LYS B 43 SHEET 5 AA2 7 LEU D 38 ALA D 44 1 O ASP D 41 N VAL B 37 SHEET 6 AA2 7 TRP D 26 ARG D 32 -1 N CYS D 27 O ALA D 44 SHEET 7 AA2 7 GLU D 77 VAL D 83 -1 O THR D 81 N TYR D 28 SHEET 1 AA3 3 SER C 48 ILE C 50 0 SHEET 2 AA3 3 LYS C 57 LYS C 61 -1 O VAL C 58 N ILE C 50 SHEET 3 AA3 3 ALA C 65 SER C 69 -1 O ALA C 65 N LYS C 61 SHEET 1 AA4 3 SER D 48 ILE D 50 0 SHEET 2 AA4 3 LYS D 57 LYS D 61 -1 O VAL D 58 N ILE D 50 SHEET 3 AA4 3 ALA D 65 SER D 69 -1 O ALA D 65 N LYS D 61 SSBOND 1 CYS C 27 CYS C 64 1555 1555 2.13 SSBOND 2 CYS C 68 CYS C 73 1555 1555 2.05 SSBOND 3 CYS D 27 CYS D 64 1555 1555 1.95 SSBOND 4 CYS D 68 CYS D 73 1555 1555 2.13 CISPEP 1 PRO C 46 LYS C 47 0 13.98 CISPEP 2 SER C 69 PRO C 70 0 -1.04 CISPEP 3 PRO D 46 LYS D 47 0 11.33 CRYST1 89.793 89.793 89.088 90.00 90.00 120.00 P 31 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011137 0.006430 0.000000 0.00000 SCALE2 0.000000 0.012860 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011225 0.00000 CONECT 1170 1463 CONECT 1463 1170 CONECT 1487 1525 CONECT 1525 1487 CONECT 1665 1958 CONECT 1958 1665 CONECT 1982 2020 CONECT 2020 1982 CONECT 2117 2118 2119 2120 2121 CONECT 2118 2117 CONECT 2119 2117 CONECT 2120 2117 CONECT 2121 2117 CONECT 2122 2123 2124 CONECT 2123 2122 CONECT 2124 2122 2125 CONECT 2125 2124 MASTER 465 0 2 8 20 0 0 6 2186 4 17 24 END