HEADER PLANT PROTEIN 27-NOV-25 9TFP TITLE COMPLEX OF BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PWT7 WITH THE TITLE 2 INTEGRATED HMA DOMAIN OF RWT7 FROM WHEAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PWT7 EFFECTOR; COMPND 3 CHAIN: C, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN KINASE DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 3 ORGANISM_TAXID: 318829; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 8 ORGANISM_COMMON: BREAD WHEAT; SOURCE 9 ORGANISM_TAXID: 4565; SOURCE 10 GENE: CFC21_106430; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HMA DOMAIN, EFFECTOR, TANDEM KINASE PROTEIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.S.YU,M.J.BANFIELD REVDAT 1 19-AUG-26 9TFP 0 JRNL AUTH D.S.YU,M.J.BANFIELD JRNL TITL STRUCTURE OF THE INTEGRATED HMA DOMAIN FROM TKPS IN COMPLEX JRNL TITL 2 WITH MAGNAPORTHE ORYZAE EFFECTORS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 48044 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3481 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 287 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 2.70000 REMARK 3 B33 (A**2) : -3.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.091 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2510 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2505 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3354 ; 1.776 ; 1.861 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5791 ; 0.581 ; 1.778 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 6.590 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 16 ; 9.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 462 ;13.084 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2813 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 539 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1225 ; 4.467 ; 1.723 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1226 ; 4.466 ; 1.725 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1523 ; 6.596 ; 3.088 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1524 ; 6.602 ; 3.090 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1285 ; 6.703 ; 2.078 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1270 ; 5.807 ; 2.017 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1808 ; 8.485 ; 3.569 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2768 ;19.559 ;21.420 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2688 ;18.604 ;19.990 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5015 ; 4.267 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 104 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0669 4.9083 37.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.0054 REMARK 3 T33: 0.0761 T12: 0.0135 REMARK 3 T13: 0.0459 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.5459 L22: 3.1901 REMARK 3 L33: 3.9727 L12: 0.0343 REMARK 3 L13: 1.3695 L23: 0.8939 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: -0.0306 S13: -0.1031 REMARK 3 S21: -0.1935 S22: -0.0836 S23: -0.1348 REMARK 3 S31: -0.1082 S32: -0.0524 S33: -0.0204 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1248 27.8159 38.5761 REMARK 3 T TENSOR REMARK 3 T11: 0.1094 T22: 0.1172 REMARK 3 T33: 0.0938 T12: -0.0946 REMARK 3 T13: -0.0731 T23: 0.0838 REMARK 3 L TENSOR REMARK 3 L11: 1.9853 L22: 3.0525 REMARK 3 L33: 2.8634 L12: 0.0835 REMARK 3 L13: -1.7303 L23: 0.0786 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: -0.2832 S13: -0.2086 REMARK 3 S21: 0.2108 S22: -0.2088 S23: -0.2974 REMARK 3 S31: -0.2415 S32: 0.3797 S33: 0.1594 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): 6.1132 39.5325 54.6714 REMARK 3 T TENSOR REMARK 3 T11: 0.4703 T22: 0.2141 REMARK 3 T33: 0.0326 T12: -0.1526 REMARK 3 T13: -0.0252 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 0.9297 L22: 2.7263 REMARK 3 L33: 4.8890 L12: -0.0189 REMARK 3 L13: -0.3969 L23: 1.3777 REMARK 3 S TENSOR REMARK 3 S11: 0.0749 S12: -0.3492 S13: 0.0794 REMARK 3 S21: 0.5098 S22: -0.0578 S23: 0.0406 REMARK 3 S31: -0.5797 S32: 0.0584 S33: -0.0171 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 104 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4742 -4.1542 55.2286 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1399 REMARK 3 T33: 0.1560 T12: 0.0674 REMARK 3 T13: -0.0198 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9708 L22: 2.3036 REMARK 3 L33: 6.3684 L12: 0.2608 REMARK 3 L13: 1.0361 L23: -1.6401 REMARK 3 S TENSOR REMARK 3 S11: 0.1466 S12: -0.1247 S13: -0.1601 REMARK 3 S21: 0.1907 S22: 0.0059 S23: -0.1257 REMARK 3 S31: 0.5439 S32: 0.4897 S33: -0.1525 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9TFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292152503. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953738 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 63.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 27.00 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 27.90 REMARK 200 R MERGE FOR SHELL (I) : 1.04300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.2, 16% (W/V) PEG 3350, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.80450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.77200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.80450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.77200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS B 74 REMARK 465 LYS B 75 REMARK 465 LYS B 76 REMARK 465 ASP B 77 REMARK 465 LYS D 75 REMARK 465 LYS D 76 REMARK 465 ASP D 77 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 60 O HOH A 201 1.98 REMARK 500 OE2 GLU D 71 O HOH D 201 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 253 O HOH A 203 3645 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 60 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG C 60 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG C 60 64.96 38.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 60 0.09 SIDE CHAIN REMARK 500 ARG A 60 0.16 SIDE CHAIN REMARK 500 ARG A 95 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9TFP C 19 98 PDB 9TFP 9TFP 19 98 DBREF 9TFP A 19 98 PDB 9TFP 9TFP 19 98 DBREF1 9TFP B 1 77 UNP A0A9R1MEH9_WHEAT DBREF2 9TFP B A0A9R1MEH9 1 77 DBREF1 9TFP D 1 77 UNP A0A9R1MEH9_WHEAT DBREF2 9TFP D A0A9R1MEH9 1 77 SEQRES 1 C 80 GLY PRO MET ARG ARG CYS VAL VAL GLU MET VAL GLY ARG SEQRES 2 C 80 ASP GLY THR PHE GLU PHE VAL ASN ASP LYS GLU TYR CYS SEQRES 3 C 80 VAL PRO PRO GLU PRO MET LEU GLN PHE GLY GLN LYS THR SEQRES 4 C 80 ASP LEU ARG PRO LYS LYS PRO GLY TYR LYS PHE PHE VAL SEQRES 5 C 80 ASN VAL ASP ALA GLY CYS THR THR ALA VAL HIS VAL LYS SEQRES 6 C 80 GLY LYS MET PRO LYS GLY TYR PHE PHE ARG THR ARG TRP SEQRES 7 C 80 GLU ASN SEQRES 1 A 80 GLY PRO MET ARG ARG CYS VAL VAL GLU MET VAL GLY ARG SEQRES 2 A 80 ASP GLY THR PHE GLU PHE VAL ASN ASP LYS GLU TYR CYS SEQRES 3 A 80 VAL PRO PRO GLU PRO MET LEU GLN PHE GLY GLN LYS THR SEQRES 4 A 80 ASP LEU ARG PRO LYS LYS PRO GLY TYR LYS PHE PHE VAL SEQRES 5 A 80 ASN VAL ASP ALA GLY CYS THR THR ALA VAL HIS VAL LYS SEQRES 6 A 80 GLY LYS MET PRO LYS GLY TYR PHE PHE ARG THR ARG TRP SEQRES 7 A 80 GLU ASN SEQRES 1 B 77 MET LYS GLN LYS ILE VAL VAL LYS VAL GLU LEU LYS ASP SEQRES 2 B 77 ASN LYS GLN LYS SER LYS ALA LEU THR ALA VAL ALA VAL SEQRES 3 B 77 LEU PRO GLY VAL GLU SER ILE SER LEU GLU ILE ASP GLY SEQRES 4 B 77 ASN ILE MET VAL ILE GLY ASP GLY VAL ASP PRO VAL HIS SEQRES 5 B 77 ALA VAL GLY LYS LEU ARG ARG LEU PHE GLY HIS ALA PHE SEQRES 6 B 77 LEU VAL SER VAL GLU GLU ILE ILE LYS LYS LYS ASP SEQRES 1 D 77 MET LYS GLN LYS ILE VAL VAL LYS VAL GLU LEU LYS ASP SEQRES 2 D 77 ASN LYS GLN LYS SER LYS ALA LEU THR ALA VAL ALA VAL SEQRES 3 D 77 LEU PRO GLY VAL GLU SER ILE SER LEU GLU ILE ASP GLY SEQRES 4 D 77 ASN ILE MET VAL ILE GLY ASP GLY VAL ASP PRO VAL HIS SEQRES 5 D 77 ALA VAL GLY LYS LEU ARG ARG LEU PHE GLY HIS ALA PHE SEQRES 6 D 77 LEU VAL SER VAL GLU GLU ILE ILE LYS LYS LYS ASP HET EDO C 101 4 HET ACT C 102 4 HET EDO C 103 4 HET SO4 C 104 5 HET SO4 C 105 5 HET SO4 C 106 5 HET EDO A 101 4 HET EDO A 102 4 HET EDO A 103 4 HET EDO A 104 4 HET SO4 A 105 5 HET EDO B 101 4 HET EDO D 101 4 HET EDO D 102 4 HET EDO D 103 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 10(C2 H6 O2) FORMUL 6 ACT C2 H3 O2 1- FORMUL 8 SO4 4(O4 S 2-) FORMUL 20 HOH *287(H2 O) HELIX 1 AA1 ASP B 13 VAL B 26 1 14 HELIX 2 AA2 ASP B 49 GLY B 62 1 14 HELIX 3 AA3 ASP D 13 VAL D 26 1 14 HELIX 4 AA4 ASP D 49 GLY D 62 1 14 SHEET 1 AA1 3 PHE C 35 CYS C 44 0 SHEET 2 AA1 3 CYS C 24 ASP C 32 -1 N VAL C 26 O GLU C 42 SHEET 3 AA1 3 TYR C 90 TRP C 96 -1 O PHE C 91 N VAL C 29 SHEET 1 AA2 3 GLU C 48 PHE C 53 0 SHEET 2 AA2 3 PHE C 68 VAL C 72 -1 O VAL C 72 N GLU C 48 SHEET 3 AA2 3 ALA C 79 LYS C 83 -1 O VAL C 80 N ASN C 71 SHEET 1 AA3 3 PHE A 35 CYS A 44 0 SHEET 2 AA3 3 CYS A 24 ASP A 32 -1 N CYS A 24 O CYS A 44 SHEET 3 AA3 3 TYR A 90 TRP A 96 -1 O PHE A 91 N VAL A 29 SHEET 1 AA4 3 GLU A 48 PHE A 53 0 SHEET 2 AA4 3 PHE A 68 VAL A 72 -1 O VAL A 70 N LEU A 51 SHEET 3 AA4 3 ALA A 79 LYS A 83 -1 O VAL A 80 N ASN A 71 SHEET 1 AA5 4 VAL B 30 LEU B 35 0 SHEET 2 AA5 4 ILE B 41 GLY B 45 -1 O MET B 42 N SER B 34 SHEET 3 AA5 4 LYS B 2 VAL B 9 -1 N ILE B 5 O VAL B 43 SHEET 4 AA5 4 ALA B 64 ILE B 72 -1 O PHE B 65 N LYS B 8 SHEET 1 AA6 4 VAL D 30 LEU D 35 0 SHEET 2 AA6 4 ILE D 41 GLY D 45 -1 O MET D 42 N SER D 34 SHEET 3 AA6 4 LYS D 2 LYS D 8 -1 N GLN D 3 O GLY D 45 SHEET 4 AA6 4 PHE D 65 ILE D 72 -1 O PHE D 65 N LYS D 8 SSBOND 1 CYS C 24 CYS C 76 1555 1555 2.12 SSBOND 2 CYS A 24 CYS A 76 1555 1555 2.12 CISPEP 1 PRO C 46 PRO C 47 0 -4.40 CISPEP 2 PRO A 46 PRO A 47 0 -6.46 CRYST1 39.915 73.609 127.544 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025053 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007840 0.00000 CONECT 47 462 CONECT 462 47 CONECT 697 1112 CONECT 1112 697 CONECT 2418 2419 2420 CONECT 2419 2418 CONECT 2420 2418 2421 CONECT 2421 2420 CONECT 2422 2423 2424 2425 CONECT 2423 2422 CONECT 2424 2422 CONECT 2425 2422 CONECT 2426 2427 2428 CONECT 2427 2426 CONECT 2428 2426 2429 CONECT 2429 2428 CONECT 2430 2431 2432 2433 2434 CONECT 2431 2430 CONECT 2432 2430 CONECT 2433 2430 CONECT 2434 2430 CONECT 2435 2436 2437 2438 2439 CONECT 2436 2435 CONECT 2437 2435 CONECT 2438 2435 CONECT 2439 2435 CONECT 2440 2441 2442 2443 2444 CONECT 2441 2440 CONECT 2442 2440 CONECT 2443 2440 CONECT 2444 2440 CONECT 2445 2446 2447 CONECT 2446 2445 CONECT 2447 2445 2448 CONECT 2448 2447 CONECT 2449 2450 2451 CONECT 2450 2449 CONECT 2451 2449 2452 CONECT 2452 2451 CONECT 2453 2454 2455 CONECT 2454 2453 CONECT 2455 2453 2456 CONECT 2456 2455 CONECT 2457 2458 2459 CONECT 2458 2457 CONECT 2459 2457 2460 CONECT 2460 2459 CONECT 2461 2462 2463 2464 2465 CONECT 2462 2461 CONECT 2463 2461 CONECT 2464 2461 CONECT 2465 2461 CONECT 2466 2467 2468 CONECT 2467 2466 CONECT 2468 2466 2469 CONECT 2469 2468 CONECT 2470 2471 2472 CONECT 2471 2470 CONECT 2472 2470 2473 CONECT 2473 2472 CONECT 2474 2475 2476 CONECT 2475 2474 CONECT 2476 2474 2477 CONECT 2477 2476 CONECT 2478 2479 2480 CONECT 2479 2478 CONECT 2480 2478 2481 CONECT 2481 2480 MASTER 414 0 15 4 20 0 0 6 2764 4 68 26 END