HEADER PLANT PROTEIN 27-NOV-25 9TFS TITLE COMPLEX OF BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PBY2 WITH THE TITLE 2 ENGINEERED INTEGRATED HMA DOMAIN OF RWT7 FROM WHEAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PBY2 EFFECTOR; COMPND 3 CHAIN: C, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN KINASE DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 3 ORGANISM_TAXID: 318829; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 8 ORGANISM_COMMON: BREAD WHEAT; SOURCE 9 ORGANISM_TAXID: 4565; SOURCE 10 GENE: LOC123166080; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HMA DOMAIN, EFFECTOR, TANDEM KINASE PROTEIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.S.YU,M.J.BANFIELD REVDAT 1 19-AUG-26 9TFS 0 JRNL AUTH D.S.YU,M.J.BANFIELD JRNL TITL STRUCTURE OF THE INTEGRATED HMA DOMAIN FROM TKPS IN COMPLEX JRNL TITL 2 WITH MAGNAPORTHE ORYZAE EFFECTORS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 34669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2526 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2130 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.99000 REMARK 3 B22 (A**2) : 0.99000 REMARK 3 B33 (A**2) : -1.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.838 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2237 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2230 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3008 ; 1.893 ; 1.830 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5164 ; 0.620 ; 1.783 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ;10.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 7.924 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 422 ;11.611 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2474 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 434 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1106 ; 1.398 ; 1.306 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1106 ; 1.392 ; 1.307 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1377 ; 2.040 ; 2.324 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1378 ; 2.041 ; 2.327 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 3.334 ; 1.863 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1096 ; 2.701 ; 1.722 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1575 ; 4.040 ; 2.953 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2477 ; 7.463 ;18.780 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2472 ; 7.462 ;18.760 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 22 C 104 REMARK 3 ORIGIN FOR THE GROUP (A): 20.1111 11.4303 13.0812 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0779 REMARK 3 T33: 0.0267 T12: 0.0523 REMARK 3 T13: -0.0209 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.4839 L22: 2.5850 REMARK 3 L33: 3.9981 L12: -0.4778 REMARK 3 L13: -1.1358 L23: 0.7549 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: -0.0047 S13: 0.1528 REMARK 3 S21: 0.0239 S22: 0.0502 S23: 0.0549 REMARK 3 S31: 0.0178 S32: 0.0431 S33: -0.0139 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 23 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 1.6575 22.5671 17.2843 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0233 REMARK 3 T33: 0.0361 T12: -0.0005 REMARK 3 T13: 0.0060 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 2.8080 L22: 3.0232 REMARK 3 L33: 6.1501 L12: 0.0278 REMARK 3 L13: -0.8282 L23: -0.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: 0.0527 S13: -0.0724 REMARK 3 S21: 0.0011 S22: -0.0958 S23: 0.2584 REMARK 3 S31: 0.2815 S32: -0.2593 S33: 0.0269 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8423 38.4825 23.9146 REMARK 3 T TENSOR REMARK 3 T11: 0.0499 T22: 0.0332 REMARK 3 T33: 0.0453 T12: 0.0027 REMARK 3 T13: 0.0034 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.8260 L22: 3.1588 REMARK 3 L33: 3.2027 L12: 1.5995 REMARK 3 L13: 0.8011 L23: 0.6831 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: 0.1116 S13: 0.2619 REMARK 3 S21: -0.1142 S22: 0.0039 S23: 0.0953 REMARK 3 S31: -0.1008 S32: 0.0139 S33: 0.0999 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 75 REMARK 3 ORIGIN FOR THE GROUP (A): 33.2495 2.1403 21.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.0392 T22: 0.0734 REMARK 3 T33: 0.0018 T12: 0.0236 REMARK 3 T13: 0.0049 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.2635 L22: 2.7491 REMARK 3 L33: 3.0717 L12: -1.3705 REMARK 3 L13: 0.4739 L23: 1.0313 REMARK 3 S TENSOR REMARK 3 S11: 0.0619 S12: 0.1320 S13: 0.0022 REMARK 3 S21: -0.1629 S22: -0.0982 S23: 0.0039 REMARK 3 S31: -0.0885 S32: -0.0045 S33: 0.0363 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9TFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292152565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953709 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 45.90 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 45.80 REMARK 200 R MERGE FOR SHELL (I) : 1.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM SULFATE, 0.1 M MES PH REMARK 280 6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.56700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 52.59850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 52.59850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.85050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 52.59850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 52.59850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 17.28350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 52.59850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.59850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.85050 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 52.59850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.59850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.28350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.56700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 C 105 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 18 REMARK 465 PRO C 19 REMARK 465 MET C 20 REMARK 465 LYS C 21 REMARK 465 GLY A 18 REMARK 465 PRO A 19 REMARK 465 MET A 20 REMARK 465 LYS A 21 REMARK 465 LYS A 22 REMARK 465 LYS B 75 REMARK 465 LYS B 76 REMARK 465 LYS B 77 REMARK 465 ASP B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 LYS D 76 REMARK 465 LYS D 77 REMARK 465 ASP D 78 REMARK 465 SER D 79 REMARK 465 SER D 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 3 O VAL B 49 2.05 REMARK 500 O HOH C 268 O HOH C 271 2.08 REMARK 500 O HOH A 217 O HOH B 205 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 32 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 59 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 MET D 43 CG - SD - CE ANGL. DEV. = -33.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 46 LYS A 47 -31.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 32 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 46 -14.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 278 DISTANCE = 5.88 ANGSTROMS DBREF 9TFS C 18 85 PDB 9TFS 9TFS 18 85 DBREF 9TFS A 18 85 PDB 9TFS 9TFS 18 85 DBREF1 9TFS B 1 80 UNP A0A3B6THV6_WHEAT DBREF2 9TFS B A0A3B6THV6 1 79 DBREF1 9TFS D 1 80 UNP A0A3B6THV6_WHEAT DBREF2 9TFS D A0A3B6THV6 1 79 SEQADV 9TFS ASP B 14 UNP A0A3B6THV ASN 14 CONFLICT SEQADV 9TFS VAL B 21 UNP A0A3B6THV LEU 21 CONFLICT SEQADV 9TFS ASP B 31 UNP A0A3B6THV GLU 31 CONFLICT SEQADV 9TFS ASP B 36 UNP A0A3B6THV GLU 36 CONFLICT SEQADV 9TFS MET B 37 UNP A0A3B6THV ILE 37 CONFLICT SEQADV 9TFS LYS B 38 UNP A0A3B6THV ASP 38 CONFLICT SEQADV 9TFS HIS B 39 UNP A0A3B6THV INSERTION SEQADV 9TFS SER B 79 UNP A0A3B6THV ASP 78 CONFLICT SEQADV 9TFS ASP D 14 UNP A0A3B6THV ASN 14 CONFLICT SEQADV 9TFS VAL D 21 UNP A0A3B6THV LEU 21 CONFLICT SEQADV 9TFS ASP D 31 UNP A0A3B6THV GLU 31 CONFLICT SEQADV 9TFS ASP D 36 UNP A0A3B6THV GLU 36 CONFLICT SEQADV 9TFS MET D 37 UNP A0A3B6THV ILE 37 CONFLICT SEQADV 9TFS LYS D 38 UNP A0A3B6THV ASP 38 CONFLICT SEQADV 9TFS HIS D 39 UNP A0A3B6THV INSERTION SEQADV 9TFS SER D 79 UNP A0A3B6THV ASP 78 CONFLICT SEQRES 1 C 68 GLY PRO MET LYS LYS PRO GLU GLU TRP CYS TYR THR THR SEQRES 2 C 68 ILE ARG ASN PRO SER GLY ARG LEU ILE TYR ASP GLU LYS SEQRES 3 C 68 ALA GLN PRO LYS SER ILE ILE SER HIS ILE THR ASN LEU SEQRES 4 C 68 LYS VAL ILE VAL LYS ALA ASN CYS ALA VAL SER CYS SER SEQRES 5 C 68 PRO ARG ASP CYS ARG GLY TYR GLU VAL GLY SER THR GLN SEQRES 6 C 68 VAL GLU GLN SEQRES 1 A 68 GLY PRO MET LYS LYS PRO GLU GLU TRP CYS TYR THR THR SEQRES 2 A 68 ILE ARG ASN PRO SER GLY ARG LEU ILE TYR ASP GLU LYS SEQRES 3 A 68 ALA GLN PRO LYS SER ILE ILE SER HIS ILE THR ASN LEU SEQRES 4 A 68 LYS VAL ILE VAL LYS ALA ASN CYS ALA VAL SER CYS SER SEQRES 5 A 68 PRO ARG ASP CYS ARG GLY TYR GLU VAL GLY SER THR GLN SEQRES 6 A 68 VAL GLU GLN SEQRES 1 B 80 MET LYS GLN LYS ILE VAL VAL LYS VAL GLU LEU LYS ASP SEQRES 2 B 80 ASP LYS GLN LYS SER LYS ALA VAL THR ALA VAL ALA VAL SEQRES 3 B 80 LEU PRO GLY VAL ASP SER ILE SER LEU ASP MET LYS HIS SEQRES 4 B 80 GLY ASN ILE MET VAL ILE GLY ASP GLY VAL ASP PRO VAL SEQRES 5 B 80 HIS ALA VAL GLY LYS LEU ARG ARG LEU PHE GLY HIS ALA SEQRES 6 B 80 PHE LEU VAL SER VAL GLU GLU ILE ILE LYS LYS LYS ASP SEQRES 7 B 80 SER SER SEQRES 1 D 80 MET LYS GLN LYS ILE VAL VAL LYS VAL GLU LEU LYS ASP SEQRES 2 D 80 ASP LYS GLN LYS SER LYS ALA VAL THR ALA VAL ALA VAL SEQRES 3 D 80 LEU PRO GLY VAL ASP SER ILE SER LEU ASP MET LYS HIS SEQRES 4 D 80 GLY ASN ILE MET VAL ILE GLY ASP GLY VAL ASP PRO VAL SEQRES 5 D 80 HIS ALA VAL GLY LYS LEU ARG ARG LEU PHE GLY HIS ALA SEQRES 6 D 80 PHE LEU VAL SER VAL GLU GLU ILE ILE LYS LYS LYS ASP SEQRES 7 D 80 SER SER HET EDO C 101 4 HET EDO C 102 4 HET EDO C 103 4 HET SO4 C 104 5 HET SO4 C 105 5 HET SO4 C 106 5 HET EDO A 101 4 HET EDO A 102 4 HET EDO A 103 4 HET SO4 A 104 5 HET SO4 A 105 5 HET EDO B 101 4 HET SO4 B 102 5 HET SO4 B 103 5 HET EDO D 101 4 HET SO4 D 102 5 HET SO4 D 103 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 EDO 8(C2 H6 O2) FORMUL 8 SO4 9(O4 S 2-) FORMUL 22 HOH *305(H2 O) HELIX 1 AA1 ALA C 62 CYS C 64 5 3 HELIX 2 AA2 ASP C 72 TYR C 76 5 5 HELIX 3 AA3 ALA A 62 CYS A 64 5 3 HELIX 4 AA4 ASP A 72 TYR A 76 5 5 HELIX 5 AA5 ASP B 13 VAL B 26 1 14 HELIX 6 AA6 ASP B 50 GLY B 63 1 14 HELIX 7 AA7 ASP D 13 VAL D 26 1 14 HELIX 8 AA8 ASP D 50 GLY D 63 1 14 SHEET 1 AA1 7 GLU C 77 VAL C 83 0 SHEET 2 AA1 7 TRP C 26 ARG C 32 -1 N ARG C 32 O GLU C 77 SHEET 3 AA1 7 LEU C 38 ALA C 44 -1 O ALA C 44 N CYS C 27 SHEET 4 AA1 7 VAL D 30 ASP D 36 1 O LEU D 35 N ASP C 41 SHEET 5 AA1 7 ASN D 41 ASP D 47 -1 O MET D 43 N SER D 34 SHEET 6 AA1 7 LYS D 2 LYS D 8 -1 N ILE D 5 O VAL D 44 SHEET 7 AA1 7 PHE D 66 GLU D 72 -1 O GLU D 71 N LYS D 4 SHEET 1 AA2 3 SER C 48 ILE C 50 0 SHEET 2 AA2 3 LYS C 57 VAL C 60 -1 O VAL C 58 N ILE C 50 SHEET 3 AA2 3 VAL C 66 SER C 69 -1 O SER C 67 N ILE C 59 SHEET 1 AA3 7 GLU A 77 VAL A 83 0 SHEET 2 AA3 7 TRP A 26 ARG A 32 -1 N TYR A 28 O THR A 81 SHEET 3 AA3 7 LEU A 38 ALA A 44 -1 O ALA A 44 N CYS A 27 SHEET 4 AA3 7 VAL B 30 ASP B 36 1 O LEU B 35 N LYS A 43 SHEET 5 AA3 7 ASN B 41 GLY B 46 -1 O MET B 43 N SER B 34 SHEET 6 AA3 7 LYS B 2 LYS B 8 -1 N VAL B 7 O ILE B 42 SHEET 7 AA3 7 PHE B 66 ILE B 73 -1 O ILE B 73 N LYS B 2 SHEET 1 AA4 3 SER A 48 ILE A 50 0 SHEET 2 AA4 3 LYS A 57 VAL A 60 -1 O VAL A 58 N ILE A 50 SHEET 3 AA4 3 VAL A 66 SER A 69 -1 O SER A 67 N ILE A 59 SSBOND 1 CYS C 27 CYS C 64 1555 1555 2.04 SSBOND 2 CYS C 68 CYS C 73 1555 1555 2.32 SSBOND 3 CYS A 27 CYS A 64 1555 1555 2.08 SSBOND 4 CYS A 68 CYS A 73 1555 1555 2.36 CISPEP 1 PRO C 46 LYS C 47 0 -0.97 CISPEP 2 SER C 69 PRO C 70 0 -1.46 CISPEP 3 SER A 69 PRO A 70 0 -1.42 CRYST1 105.197 105.197 69.134 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009506 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009506 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014465 0.00000 CONECT 54 347 CONECT 347 54 CONECT 371 409 CONECT 409 371 CONECT 550 843 CONECT 843 550 CONECT 867 905 CONECT 905 867 CONECT 2149 2150 2151 CONECT 2150 2149 CONECT 2151 2149 2152 CONECT 2152 2151 CONECT 2153 2154 2155 CONECT 2154 2153 CONECT 2155 2153 2156 CONECT 2156 2155 CONECT 2157 2158 2159 CONECT 2158 2157 CONECT 2159 2157 2160 CONECT 2160 2159 CONECT 2161 2162 2163 2164 2165 CONECT 2162 2161 CONECT 2163 2161 CONECT 2164 2161 CONECT 2165 2161 CONECT 2166 2167 2168 2169 2170 CONECT 2167 2166 CONECT 2168 2166 CONECT 2169 2166 CONECT 2170 2166 CONECT 2171 2172 2173 2174 2175 CONECT 2172 2171 CONECT 2173 2171 CONECT 2174 2171 CONECT 2175 2171 CONECT 2176 2177 2178 CONECT 2177 2176 CONECT 2178 2176 2179 CONECT 2179 2178 CONECT 2180 2181 2182 CONECT 2181 2180 CONECT 2182 2180 2183 CONECT 2183 2182 CONECT 2184 2185 2186 CONECT 2185 2184 CONECT 2186 2184 2187 CONECT 2187 2186 CONECT 2188 2189 2190 2191 2192 CONECT 2189 2188 CONECT 2190 2188 CONECT 2191 2188 CONECT 2192 2188 CONECT 2193 2194 2195 2196 2197 CONECT 2194 2193 CONECT 2195 2193 CONECT 2196 2193 CONECT 2197 2193 CONECT 2198 2199 2200 CONECT 2199 2198 CONECT 2200 2198 2201 CONECT 2201 2200 CONECT 2202 2203 2204 2205 2206 CONECT 2203 2202 CONECT 2204 2202 CONECT 2205 2202 CONECT 2206 2202 CONECT 2207 2208 2209 2210 2211 CONECT 2208 2207 CONECT 2209 2207 CONECT 2210 2207 CONECT 2211 2207 CONECT 2212 2213 2214 CONECT 2213 2212 CONECT 2214 2212 2215 CONECT 2215 2214 CONECT 2216 2217 2218 2219 2220 CONECT 2217 2216 CONECT 2218 2216 CONECT 2219 2216 CONECT 2220 2216 CONECT 2221 2222 2223 2224 2225 CONECT 2222 2221 CONECT 2223 2221 CONECT 2224 2221 CONECT 2225 2221 MASTER 452 0 17 8 20 0 0 6 2512 4 85 26 END