HEADER PLANT PROTEIN 27-NOV-25 9TFT TITLE COMPLEX OF BLAST (MAGNAPORTHE ORYZAE) EFFECTOR PWT7 WITH THE TITLE 2 ENGINEERED INTEGRATED HMA DOMAIN OF RWT7 FROM WHEAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PWT7 EFFECTOR; COMPND 3 CHAIN: C, A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN KINASE DOMAIN-CONTAINING PROTEIN; COMPND 7 CHAIN: D, B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYRICULARIA ORYZAE; SOURCE 3 ORGANISM_TAXID: 318829; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 8 ORGANISM_COMMON: BREAD WHEAT; SOURCE 9 ORGANISM_TAXID: 4565; SOURCE 10 GENE: LOC123166080; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HMA DOMAIN, EFFECTOR, TANDEM KINASE PROTEIN, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.S.YU,M.J.BANFIELD REVDAT 1 19-AUG-26 9TFT 0 JRNL AUTH D.S.YU,M.J.BANFIELD JRNL TITL STRUCTURE OF THE INTEGRATED HMA DOMAIN FROM TKPS IN COMPLEX JRNL TITL 2 WITH MAGNAPORTHE ORYZAE EFFECTORS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 176527 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.153 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 9457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13074 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 677 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.020 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.020 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.600 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2565 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2585 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3464 ; 1.948 ; 1.863 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5973 ; 0.662 ; 1.794 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.552 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ;10.108 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 493 ;10.502 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2956 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 564 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 2.572 ; 0.741 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1260 ; 2.563 ; 0.741 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1574 ; 3.748 ; 1.334 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1575 ; 3.749 ; 1.335 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1305 ; 3.925 ; 0.936 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1306 ; 3.924 ; 0.938 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1879 ; 5.445 ; 1.636 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2974 ;11.824 ;13.950 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2809 ;10.200 ;11.350 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5150 ; 4.201 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 98 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5268 -1.6391 26.3091 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0253 REMARK 3 T33: 0.0293 T12: 0.0107 REMARK 3 T13: 0.0038 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.7234 L22: 0.6893 REMARK 3 L33: 1.1049 L12: -0.1708 REMARK 3 L13: 0.7386 L23: -0.2334 REMARK 3 S TENSOR REMARK 3 S11: -0.0706 S12: -0.0058 S13: 0.0668 REMARK 3 S21: 0.0018 S22: -0.0063 S23: 0.0231 REMARK 3 S31: -0.1104 S32: -0.0446 S33: 0.0769 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 19 A 98 REMARK 3 ORIGIN FOR THE GROUP (A): -25.2679 -15.4875 13.9442 REMARK 3 T TENSOR REMARK 3 T11: 0.0081 T22: 0.0062 REMARK 3 T33: 0.0030 T12: 0.0068 REMARK 3 T13: 0.0003 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.6627 L22: 1.0079 REMARK 3 L33: 1.6984 L12: 0.0134 REMARK 3 L13: -0.6052 L23: 0.0354 REMARK 3 S TENSOR REMARK 3 S11: -0.0170 S12: -0.0154 S13: 0.0286 REMARK 3 S21: -0.0220 S22: -0.0007 S23: 0.0072 REMARK 3 S31: 0.0340 S32: 0.0257 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 75 REMARK 3 ORIGIN FOR THE GROUP (A): 4.2060 -12.6543 42.2797 REMARK 3 T TENSOR REMARK 3 T11: 0.0560 T22: 0.0300 REMARK 3 T33: 0.0278 T12: 0.0089 REMARK 3 T13: 0.0085 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.0326 L22: 1.6042 REMARK 3 L33: 2.3894 L12: 0.2109 REMARK 3 L13: 0.0055 L23: -0.5359 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0094 S13: -0.0131 REMARK 3 S21: 0.1514 S22: -0.0523 S23: -0.0543 REMARK 3 S31: 0.1375 S32: 0.0662 S33: 0.0324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3563 -5.8946 -3.7716 REMARK 3 T TENSOR REMARK 3 T11: 0.0438 T22: 0.0263 REMARK 3 T33: 0.0212 T12: 0.0013 REMARK 3 T13: 0.0096 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 0.1231 L22: 1.8532 REMARK 3 L33: 1.5228 L12: 0.2199 REMARK 3 L13: -0.3607 L23: -0.8253 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: 0.0183 S13: 0.0261 REMARK 3 S21: -0.1317 S22: 0.0083 S23: -0.0495 REMARK 3 S31: 0.0050 S32: 0.0429 S33: -0.0077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9TFT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-NOV-25. REMARK 100 THE DEPOSITION ID IS D_1292152532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.750006 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 186021 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.990 REMARK 200 RESOLUTION RANGE LOW (A) : 66.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 1.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL PH 8.5, 25% (W/V) PEG REMARK 280 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.08700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS D 76 REMARK 465 LYS D 77 REMARK 465 ASP D 78 REMARK 465 SER D 79 REMARK 465 SER D 80 REMARK 465 LYS B 76 REMARK 465 LYS B 77 REMARK 465 ASP B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 72 O HOH B 101 1.54 REMARK 500 OE1 GLU B 10 O HOH B 102 1.65 REMARK 500 O HOH A 142 O HOH A 159 1.73 REMARK 500 O HOH A 101 O HOH A 121 1.75 REMARK 500 OD1 ASN A 98 O HOH A 101 1.88 REMARK 500 O HOH C 117 O HOH A 209 1.93 REMARK 500 O HOH C 195 O HOH C 221 2.02 REMARK 500 CG GLU B 10 O HOH B 105 2.07 REMARK 500 OE1 GLN C 52 O HOH C 101 2.11 REMARK 500 CB ASN A 98 O HOH A 101 2.15 REMARK 500 O HOH A 102 O HOH B 201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 173 O HOH B 102 2445 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 60 CG - CD - NE ANGL. DEV. = 23.1 DEGREES REMARK 500 ARG C 60 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 60 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 MET A 21 CG - SD - CE ANGL. DEV. = 18.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET C 50 58.05 -147.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 60 0.19 SIDE CHAIN REMARK 500 ARG A 93 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 230 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH C 231 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH C 232 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH C 233 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH C 234 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH C 235 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH C 236 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH C 237 DISTANCE = 7.28 ANGSTROMS REMARK 525 HOH C 238 DISTANCE = 7.49 ANGSTROMS REMARK 525 HOH A 251 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 252 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 253 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A 254 DISTANCE = 7.60 ANGSTROMS REMARK 525 HOH A 255 DISTANCE = 7.69 ANGSTROMS REMARK 525 HOH B 232 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 233 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B 234 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 235 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 236 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B 237 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH B 238 DISTANCE = 8.02 ANGSTROMS REMARK 525 HOH B 239 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH B 240 DISTANCE = 9.92 ANGSTROMS DBREF 9TFT C 19 98 PDB 9TFT 9TFT 19 98 DBREF 9TFT A 19 98 PDB 9TFT 9TFT 19 98 DBREF1 9TFT D 1 80 UNP A0A3B6THV6_WHEAT DBREF2 9TFT D A0A3B6THV6 1 79 DBREF1 9TFT B 1 80 UNP A0A3B6THV6_WHEAT DBREF2 9TFT B A0A3B6THV6 1 79 SEQADV 9TFT ASP D 14 UNP A0A3B6THV ASN 14 CONFLICT SEQADV 9TFT VAL D 21 UNP A0A3B6THV LEU 21 CONFLICT SEQADV 9TFT ASP D 31 UNP A0A3B6THV GLU 31 CONFLICT SEQADV 9TFT ASP D 36 UNP A0A3B6THV GLU 36 CONFLICT SEQADV 9TFT MET D 37 UNP A0A3B6THV ILE 37 CONFLICT SEQADV 9TFT LYS D 38 UNP A0A3B6THV ASP 38 CONFLICT SEQADV 9TFT HIS D 39 UNP A0A3B6THV INSERTION SEQADV 9TFT SER D 79 UNP A0A3B6THV ASP 78 CONFLICT SEQADV 9TFT ASP B 14 UNP A0A3B6THV ASN 14 CONFLICT SEQADV 9TFT VAL B 21 UNP A0A3B6THV LEU 21 CONFLICT SEQADV 9TFT ASP B 31 UNP A0A3B6THV GLU 31 CONFLICT SEQADV 9TFT ASP B 36 UNP A0A3B6THV GLU 36 CONFLICT SEQADV 9TFT MET B 37 UNP A0A3B6THV ILE 37 CONFLICT SEQADV 9TFT LYS B 38 UNP A0A3B6THV ASP 38 CONFLICT SEQADV 9TFT HIS B 39 UNP A0A3B6THV INSERTION SEQADV 9TFT SER B 79 UNP A0A3B6THV ASP 78 CONFLICT SEQRES 1 C 80 GLY PRO MET ARG ARG CYS VAL VAL GLU MET VAL GLY ARG SEQRES 2 C 80 ASP GLY THR PHE GLU PHE VAL ASN ASP LYS GLU TYR CYS SEQRES 3 C 80 VAL PRO PRO GLU PRO MET LEU GLN PHE GLY GLN LYS THR SEQRES 4 C 80 ASP LEU ARG PRO LYS LYS PRO GLY TYR LYS PHE PHE VAL SEQRES 5 C 80 ASN VAL ASP ALA GLY CYS THR THR ALA VAL HIS VAL LYS SEQRES 6 C 80 GLY LYS MET PRO LYS GLY TYR PHE PHE ARG THR ARG TRP SEQRES 7 C 80 GLU ASN SEQRES 1 A 80 GLY PRO MET ARG ARG CYS VAL VAL GLU MET VAL GLY ARG SEQRES 2 A 80 ASP GLY THR PHE GLU PHE VAL ASN ASP LYS GLU TYR CYS SEQRES 3 A 80 VAL PRO PRO GLU PRO MET LEU GLN PHE GLY GLN LYS THR SEQRES 4 A 80 ASP LEU ARG PRO LYS LYS PRO GLY TYR LYS PHE PHE VAL SEQRES 5 A 80 ASN VAL ASP ALA GLY CYS THR THR ALA VAL HIS VAL LYS SEQRES 6 A 80 GLY LYS MET PRO LYS GLY TYR PHE PHE ARG THR ARG TRP SEQRES 7 A 80 GLU ASN SEQRES 1 D 80 MET LYS GLN LYS ILE VAL VAL LYS VAL GLU LEU LYS ASP SEQRES 2 D 80 ASP LYS GLN LYS SER LYS ALA VAL THR ALA VAL ALA VAL SEQRES 3 D 80 LEU PRO GLY VAL ASP SER ILE SER LEU ASP MET LYS HIS SEQRES 4 D 80 GLY ASN ILE MET VAL ILE GLY ASP GLY VAL ASP PRO VAL SEQRES 5 D 80 HIS ALA VAL GLY LYS LEU ARG ARG LEU PHE GLY HIS ALA SEQRES 6 D 80 PHE LEU VAL SER VAL GLU GLU ILE ILE LYS LYS LYS ASP SEQRES 7 D 80 SER SER SEQRES 1 B 80 MET LYS GLN LYS ILE VAL VAL LYS VAL GLU LEU LYS ASP SEQRES 2 B 80 ASP LYS GLN LYS SER LYS ALA VAL THR ALA VAL ALA VAL SEQRES 3 B 80 LEU PRO GLY VAL ASP SER ILE SER LEU ASP MET LYS HIS SEQRES 4 B 80 GLY ASN ILE MET VAL ILE GLY ASP GLY VAL ASP PRO VAL SEQRES 5 B 80 HIS ALA VAL GLY LYS LEU ARG ARG LEU PHE GLY HIS ALA SEQRES 6 B 80 PHE LEU VAL SER VAL GLU GLU ILE ILE LYS LYS LYS ASP SEQRES 7 B 80 SER SER FORMUL 5 HOH *477(H2 O) HELIX 1 AA1 ASP D 13 VAL D 26 1 14 HELIX 2 AA2 ASP D 50 GLY D 63 1 14 HELIX 3 AA3 ASP B 13 VAL B 26 1 14 HELIX 4 AA4 ASP B 50 GLY B 63 1 14 SHEET 1 AA1 3 PHE C 35 CYS C 44 0 SHEET 2 AA1 3 CYS C 24 ASP C 32 -1 N CYS C 24 O CYS C 44 SHEET 3 AA1 3 TYR C 90 TRP C 96 -1 O PHE C 91 N VAL C 29 SHEET 1 AA2 3 GLU C 48 PHE C 53 0 SHEET 2 AA2 3 PHE C 68 VAL C 72 -1 O VAL C 72 N GLU C 48 SHEET 3 AA2 3 ALA C 79 LYS C 83 -1 O VAL C 82 N PHE C 69 SHEET 1 AA3 3 PHE A 35 CYS A 44 0 SHEET 2 AA3 3 CYS A 24 ASP A 32 -1 N VAL A 26 O GLU A 42 SHEET 3 AA3 3 TYR A 90 TRP A 96 -1 O ARG A 95 N VAL A 25 SHEET 1 AA4 3 GLU A 48 PHE A 53 0 SHEET 2 AA4 3 LYS A 67 VAL A 72 -1 O VAL A 72 N GLU A 48 SHEET 3 AA4 3 ALA A 79 LYS A 85 -1 O VAL A 80 N ASN A 71 SHEET 1 AA5 4 VAL D 30 LEU D 35 0 SHEET 2 AA5 4 ASN D 41 GLY D 46 -1 O ILE D 45 N ASP D 31 SHEET 3 AA5 4 LYS D 2 VAL D 9 -1 N VAL D 7 O ILE D 42 SHEET 4 AA5 4 ALA D 65 ILE D 73 -1 O PHE D 66 N LYS D 8 SHEET 1 AA6 4 VAL B 30 ASP B 36 0 SHEET 2 AA6 4 ASN B 41 GLY B 46 -1 O MET B 43 N SER B 34 SHEET 3 AA6 4 LYS B 2 LYS B 8 -1 N VAL B 7 O ILE B 42 SHEET 4 AA6 4 PHE B 66 ILE B 73 -1 O VAL B 68 N VAL B 6 SSBOND 1 CYS C 24 CYS C 76 1555 1555 2.05 SSBOND 2 CYS A 24 CYS A 76 1555 1555 2.05 CISPEP 1 PRO C 46 PRO C 47 0 -2.04 CISPEP 2 PRO A 46 PRO A 47 0 -9.39 CRYST1 40.524 66.174 65.747 90.00 104.85 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024677 0.000000 0.006543 0.00000 SCALE2 0.000000 0.015112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015735 0.00000 CONECT 47 470 CONECT 470 47 CONECT 710 1131 CONECT 1131 710 MASTER 453 0 0 4 20 0 0 6 2917 4 4 28 END