HEADER RNA BINDING PROTEIN 08-DEC-25 9TJT TITLE TERNARY COMPLEX OF E. COLI LEUCYL-TRNA SYNTHETASE, TRNA(LEU) AND THE TITLE 2 BENZOXABOROLE CMPD6 IN THE PRE-ACTIVATION STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 5 EC: 6.1.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: E. COLI LEUCYL TRNA SYNTHETASE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRNA(LEU); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: E. COLI TRNA(LEU) ISOACCEPTOR UAA WITH CMPD6 COMPND 13 COVALENTLY BOUND TO ADENOSINE 76 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: LEUS, B0642, JW0637; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-FLUC(DELTAI); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 905932 KEYWDS LEUCINE TRNA LIGASE ANTIMICROBIAL TARGET TRNA AMINOACYLATION FOR KEYWDS 2 PROTEIN TRANSLATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.HOFFMANN,A.PALENCIA REVDAT 1 05-AUG-26 9TJT 0 JRNL AUTH G.HOFFMANN,M.DULIC,I.GRUIC-SOVULJ,A.PALENCIA JRNL TITL THE ZN DOMAIN ACTS AS A DYNAMIC SWITCH COORDINATING JRNL TITL 2 MULTIPLE-STEP AMINOACYLATION IN BACTERIAL LEUCYL-TRNA JRNL TITL 3 SYNTHETASE JRNL REF NUCLEIC ACIDS RES. 2026 JRNL REFN ESSN 1362-4962 JRNL DOI 10.1093/NAR/GKAG786 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.89 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.47 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 530 REMARK 3 BIN R VALUE (WORKING SET) : 0.2838 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 23 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6705 REMARK 3 NUCLEIC ACID ATOMS : 1737 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.05620 REMARK 3 B22 (A**2) : 4.77120 REMARK 3 B33 (A**2) : -2.71490 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 12.88940 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.366 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.386 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8860 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12424 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2784 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1270 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8860 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 6 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1203 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5928 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.79 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.72 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.27 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -6.6567 -7.4828 106.4989 REMARK 3 T TENSOR REMARK 3 T11: -0.0563 T22: -0.0754 REMARK 3 T33: -0.1581 T12: -0.0722 REMARK 3 T13: -0.0643 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 4.6935 L22: 1.7143 REMARK 3 L33: 1.105 L12: -1.7678 REMARK 3 L13: 2.0127 L23: -0.7126 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: 0.2462 S13: -0.4722 REMARK 3 S21: -0.2765 S22: 0.0578 S23: 0.1737 REMARK 3 S31: 0.2434 S32: -0.1689 S33: -0.2203 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 19.4156 3.3757 110.1071 REMARK 3 T TENSOR REMARK 3 T11: -0.0008 T22: -0.1157 REMARK 3 T33: -0.0244 T12: -0.0205 REMARK 3 T13: -0.0107 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 0.3266 L22: 0.3298 REMARK 3 L33: 0.5338 L12: -0.2022 REMARK 3 L13: 0.2872 L23: -0.2189 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.078 S13: 0.0177 REMARK 3 S21: 0.0142 S22: -0.0571 S23: -0.0188 REMARK 3 S31: 0.0093 S32: -0.0169 S33: 0.0332 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9TJT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-26. REMARK 100 THE DEPOSITION ID IS D_1292152748. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27637 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 88.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.980 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.960 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH5.6, 0.2 M REMARK 280 NACL, 20% PEG6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.59500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 THR A 288 REMARK 465 LYS A 289 REMARK 465 VAL A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ALA A 293 REMARK 465 GLU A 294 REMARK 465 MET A 295 REMARK 465 ALA A 296 REMARK 465 THR A 297 REMARK 465 LEU A 839 REMARK 465 ASP A 840 REMARK 465 GLY A 841 REMARK 465 VAL A 842 REMARK 465 THR A 843 REMARK 465 U B 33 REMARK 465 U B 34 REMARK 465 A B 35 REMARK 465 A B 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 270 CD CE NZ REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 463 CG1 CG2 CD1 REMARK 470 LYS A 622 CD CE NZ REMARK 470 LYS A 699 CD CE NZ REMARK 470 LYS A 809 CD CE NZ REMARK 470 GLU A 827 CD OE1 OE2 REMARK 470 U B 32 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 32 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 32 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' C B 75 O5' EYT B 101 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 P G B 1 OP3 -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 1 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 179 -148.34 -118.65 REMARK 500 LYS A 194 73.34 -63.60 REMARK 500 HIS A 211 33.80 -99.41 REMARK 500 ASP A 364 37.55 -90.84 REMARK 500 LEU A 370 34.98 -99.21 REMARK 500 GLN A 425 45.79 -93.75 REMARK 500 CYS A 505 63.59 -155.66 REMARK 500 GLU A 532 -51.98 -24.97 REMARK 500 HIS A 533 29.89 -142.00 REMARK 500 ASP A 596 -164.87 -72.79 REMARK 500 THR A 721 76.29 -100.13 REMARK 500 PRO A 851 106.46 -52.65 REMARK 500 LYS A 853 -58.34 -138.46 REMARK 500 LEU A 855 77.89 -158.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 159 SG REMARK 620 2 ASP A 162 OD1 76.4 REMARK 620 3 CYS A 176 SG 99.3 161.4 REMARK 620 4 CYS A 179 SG 107.4 93.1 105.4 REMARK 620 N 1 2 3 DBREF 9TJT A 1 860 UNP P07813 SYL_ECOLI 1 860 DBREF1 9TJT B 1 75 GB CP053605.1 DBREF2 9TJT B 1845258627 1880025 1879940 SEQADV 9TJT MET A -19 UNP P07813 INITIATING METHIONINE SEQADV 9TJT GLY A -18 UNP P07813 EXPRESSION TAG SEQADV 9TJT SER A -17 UNP P07813 EXPRESSION TAG SEQADV 9TJT SER A -16 UNP P07813 EXPRESSION TAG SEQADV 9TJT HIS A -15 UNP P07813 EXPRESSION TAG SEQADV 9TJT HIS A -14 UNP P07813 EXPRESSION TAG SEQADV 9TJT HIS A -13 UNP P07813 EXPRESSION TAG SEQADV 9TJT HIS A -12 UNP P07813 EXPRESSION TAG SEQADV 9TJT HIS A -11 UNP P07813 EXPRESSION TAG SEQADV 9TJT HIS A -10 UNP P07813 EXPRESSION TAG SEQADV 9TJT SER A -9 UNP P07813 EXPRESSION TAG SEQADV 9TJT SER A -8 UNP P07813 EXPRESSION TAG SEQADV 9TJT GLY A -7 UNP P07813 EXPRESSION TAG SEQADV 9TJT LEU A -6 UNP P07813 EXPRESSION TAG SEQADV 9TJT VAL A -5 UNP P07813 EXPRESSION TAG SEQADV 9TJT PRO A -4 UNP P07813 EXPRESSION TAG SEQADV 9TJT ARG A -3 UNP P07813 EXPRESSION TAG SEQADV 9TJT GLY A -2 UNP P07813 EXPRESSION TAG SEQADV 9TJT SER A -1 UNP P07813 EXPRESSION TAG SEQADV 9TJT HIS A 0 UNP P07813 EXPRESSION TAG SEQRES 1 A 880 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 880 LEU VAL PRO ARG GLY SER HIS MET GLN GLU GLN TYR ARG SEQRES 3 A 880 PRO GLU GLU ILE GLU SER LYS VAL GLN LEU HIS TRP ASP SEQRES 4 A 880 GLU LYS ARG THR PHE GLU VAL THR GLU ASP GLU SER LYS SEQRES 5 A 880 GLU LYS TYR TYR CYS LEU SER MET LEU PRO TYR PRO SER SEQRES 6 A 880 GLY ARG LEU HIS MET GLY HIS VAL ARG ASN TYR THR ILE SEQRES 7 A 880 GLY ASP VAL ILE ALA ARG TYR GLN ARG MET LEU GLY LYS SEQRES 8 A 880 ASN VAL LEU GLN PRO ILE GLY TRP ASP ALA PHE GLY LEU SEQRES 9 A 880 PRO ALA GLU GLY ALA ALA VAL LYS ASN ASN THR ALA PRO SEQRES 10 A 880 ALA PRO TRP THR TYR ASP ASN ILE ALA TYR MET LYS ASN SEQRES 11 A 880 GLN LEU LYS MET LEU GLY PHE GLY TYR ASP TRP SER ARG SEQRES 12 A 880 GLU LEU ALA THR CYS THR PRO GLU TYR TYR ARG TRP GLU SEQRES 13 A 880 GLN LYS PHE PHE THR GLU LEU TYR LYS LYS GLY LEU VAL SEQRES 14 A 880 TYR LYS LYS THR SER ALA VAL ASN TRP CYS PRO ASN ASP SEQRES 15 A 880 GLN THR VAL LEU ALA ASN GLU GLN VAL ILE ASP GLY CYS SEQRES 16 A 880 CYS TRP ARG CYS ASP THR LYS VAL GLU ARG LYS GLU ILE SEQRES 17 A 880 PRO GLN TRP PHE ILE LYS ILE THR ALA TYR ALA ASP GLU SEQRES 18 A 880 LEU LEU ASN ASP LEU ASP LYS LEU ASP HIS TRP PRO ASP SEQRES 19 A 880 THR VAL LYS THR MET GLN ARG ASN TRP ILE GLY ARG SER SEQRES 20 A 880 GLU GLY VAL GLU ILE THR PHE ASN VAL ASN ASP TYR ASP SEQRES 21 A 880 ASN THR LEU THR VAL TYR THR THR ARG PRO ASP THR PHE SEQRES 22 A 880 MET GLY CYS THR TYR LEU ALA VAL ALA ALA GLY HIS PRO SEQRES 23 A 880 LEU ALA GLN LYS ALA ALA GLU ASN ASN PRO GLU LEU ALA SEQRES 24 A 880 ALA PHE ILE ASP GLU CYS ARG ASN THR LYS VAL ALA GLU SEQRES 25 A 880 ALA GLU MET ALA THR MET GLU LYS LYS GLY VAL ASP THR SEQRES 26 A 880 GLY PHE LYS ALA VAL HIS PRO LEU THR GLY GLU GLU ILE SEQRES 27 A 880 PRO VAL TRP ALA ALA ASN PHE VAL LEU MET GLU TYR GLY SEQRES 28 A 880 THR GLY ALA VAL MET ALA VAL PRO GLY HIS ASP GLN ARG SEQRES 29 A 880 ASP TYR GLU PHE ALA SER LYS TYR GLY LEU ASN ILE LYS SEQRES 30 A 880 PRO VAL ILE LEU ALA ALA ASP GLY SER GLU PRO ASP LEU SEQRES 31 A 880 SER GLN GLN ALA LEU THR GLU LYS GLY VAL LEU PHE ASN SEQRES 32 A 880 SER GLY GLU PHE ASN GLY LEU ASP HIS GLU ALA ALA PHE SEQRES 33 A 880 ASN ALA ILE ALA ASP LYS LEU THR ALA MET GLY VAL GLY SEQRES 34 A 880 GLU ARG LYS VAL ASN TYR ARG LEU ARG ASP TRP GLY VAL SEQRES 35 A 880 SER ARG GLN ARG TYR TRP GLY ALA PRO ILE PRO MET VAL SEQRES 36 A 880 THR LEU GLU ASP GLY THR VAL MET PRO THR PRO ASP ASP SEQRES 37 A 880 GLN LEU PRO VAL ILE LEU PRO GLU ASP VAL VAL MET ASP SEQRES 38 A 880 GLY ILE THR SER PRO ILE LYS ALA ASP PRO GLU TRP ALA SEQRES 39 A 880 LYS THR THR VAL ASN GLY MET PRO ALA LEU ARG GLU THR SEQRES 40 A 880 ASP THR PHE ASP THR PHE MET GLU SER SER TRP TYR TYR SEQRES 41 A 880 ALA ARG TYR THR CYS PRO GLN TYR LYS GLU GLY MET LEU SEQRES 42 A 880 ASP SER GLU ALA ALA ASN TYR TRP LEU PRO VAL ASP ILE SEQRES 43 A 880 TYR ILE GLY GLY ILE GLU HIS ALA ILE MET HIS LEU LEU SEQRES 44 A 880 TYR PHE ARG PHE PHE HIS LYS LEU MET ARG ASP ALA GLY SEQRES 45 A 880 MET VAL ASN SER ASP GLU PRO ALA LYS GLN LEU LEU CYS SEQRES 46 A 880 GLN GLY MET VAL LEU ALA ASP ALA PHE TYR TYR VAL GLY SEQRES 47 A 880 GLU ASN GLY GLU ARG ASN TRP VAL SER PRO VAL ASP ALA SEQRES 48 A 880 ILE VAL GLU ARG ASP GLU LYS GLY ARG ILE VAL LYS ALA SEQRES 49 A 880 LYS ASP ALA ALA GLY HIS GLU LEU VAL TYR THR GLY MET SEQRES 50 A 880 SER LYS MET SER LYS SER LYS ASN ASN GLY ILE ASP PRO SEQRES 51 A 880 GLN VAL MET VAL GLU ARG TYR GLY ALA ASP THR VAL ARG SEQRES 52 A 880 LEU PHE MET MET PHE ALA SER PRO ALA ASP MET THR LEU SEQRES 53 A 880 GLU TRP GLN GLU SER GLY VAL GLU GLY ALA ASN ARG PHE SEQRES 54 A 880 LEU LYS ARG VAL TRP LYS LEU VAL TYR GLU HIS THR ALA SEQRES 55 A 880 LYS GLY ASP VAL ALA ALA LEU ASN VAL ASP ALA LEU THR SEQRES 56 A 880 GLU ASN GLN LYS ALA LEU ARG ARG ASP VAL HIS LYS THR SEQRES 57 A 880 ILE ALA LYS VAL THR ASP ASP ILE GLY ARG ARG GLN THR SEQRES 58 A 880 PHE ASN THR ALA ILE ALA ALA ILE MET GLU LEU MET ASN SEQRES 59 A 880 LYS LEU ALA LYS ALA PRO THR ASP GLY GLU GLN ASP ARG SEQRES 60 A 880 ALA LEU MET GLN GLU ALA LEU LEU ALA VAL VAL ARG MET SEQRES 61 A 880 LEU ASN PRO PHE THR PRO HIS ILE CYS PHE THR LEU TRP SEQRES 62 A 880 GLN GLU LEU LYS GLY GLU GLY ASP ILE ASP ASN ALA PRO SEQRES 63 A 880 TRP PRO VAL ALA ASP GLU LYS ALA MET VAL GLU ASP SER SEQRES 64 A 880 THR LEU VAL VAL VAL GLN VAL ASN GLY LYS VAL ARG ALA SEQRES 65 A 880 LYS ILE THR VAL PRO VAL ASP ALA THR GLU GLU GLN VAL SEQRES 66 A 880 ARG GLU ARG ALA GLY GLN GLU HIS LEU VAL ALA LYS TYR SEQRES 67 A 880 LEU ASP GLY VAL THR VAL ARG LYS VAL ILE TYR VAL PRO SEQRES 68 A 880 GLY LYS LEU LEU ASN LEU VAL VAL GLY SEQRES 1 B 86 G C C C G G A U G G U G G SEQRES 2 B 86 A A U C G G U A G A C A C SEQRES 3 B 86 A A G G G A U U U A A A A SEQRES 4 B 86 U C C C U C G G C G U U C SEQRES 5 B 86 G C G C U G U G C G G G U SEQRES 6 B 86 U C A A G U C C C G C U C SEQRES 7 B 86 C G G G U A C C HET ZN A 901 1 HET GOL A 902 6 HET EYT B 101 45 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM EYT [(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(AMINOMETHYL)-8- HETNAM 2 EYT (6-AMINOPURIN-9-YL)-2'-BROMANYL-5'-[3-OXIDANYLIDENE-3- HETNAM 3 EYT (1,3-THIAZOL-2-YLAMINO)PROPOXY]SPIRO[2,4,7-TRIOXA-3- HETNAM 4 EYT BORANUIDABICYCLO[3.3.0]OCTANE-3,7'-8-OXA-7- HETNAM 5 EYT BORANUIDABICYCLO[4.3.0]NONA-1(6),2,4-TRIENE]-6- HETNAM 6 EYT YL]METHYL DIHYDROGEN PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN ZN 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 EYT C24 H26 B BR N8 O10 P S 1- FORMUL 6 HOH *100(H2 O) HELIX 1 AA1 ARG A 6 ARG A 22 1 17 HELIX 2 AA2 HIS A 49 LEU A 69 1 21 HELIX 3 AA3 GLY A 83 ASN A 93 1 11 HELIX 4 AA4 ALA A 96 LEU A 115 1 20 HELIX 5 AA5 ASP A 120 GLU A 124 5 5 HELIX 6 AA6 THR A 129 LYS A 146 1 18 HELIX 7 AA7 ILE A 195 ALA A 197 5 3 HELIX 8 AA8 TYR A 198 ASP A 205 1 8 HELIX 9 AA9 LEU A 206 LEU A 209 5 4 HELIX 10 AB1 PRO A 213 GLY A 225 1 13 HELIX 11 AB2 ARG A 249 CYS A 256 5 8 HELIX 12 AB3 HIS A 265 ALA A 272 1 8 HELIX 13 AB4 ASN A 275 ASN A 287 1 13 HELIX 14 AB5 ASP A 342 GLY A 353 1 12 HELIX 15 AB6 SER A 384 ASN A 388 5 5 HELIX 16 AB7 ASP A 391 MET A 406 1 16 HELIX 17 AB8 PRO A 446 LEU A 450 5 5 HELIX 18 AB9 SER A 465 ASP A 470 1 6 HELIX 19 AC1 ASP A 470 ALA A 474 1 5 HELIX 20 AC2 THR A 492 SER A 497 5 6 HELIX 21 AC3 TRP A 498 TYR A 503 1 6 HELIX 22 AC4 ASP A 514 LEU A 522 1 9 HELIX 23 AC5 MET A 536 ALA A 551 1 16 HELIX 24 AC6 ASP A 629 GLY A 638 1 10 HELIX 25 AC7 GLY A 638 ALA A 649 1 12 HELIX 26 AC8 GLN A 659 LYS A 683 1 25 HELIX 27 AC9 THR A 695 ARG A 718 1 24 HELIX 28 AD1 THR A 721 LYS A 738 1 18 HELIX 29 AD2 GLY A 743 ASN A 762 1 20 HELIX 30 AD3 THR A 765 LYS A 777 1 13 HELIX 31 AD4 ASP A 781 ALA A 785 5 5 HELIX 32 AD5 GLU A 792 VAL A 796 5 5 HELIX 33 AD6 THR A 821 GLU A 832 1 12 HELIX 34 AD7 GLU A 832 LYS A 837 1 6 SHEET 1 AA1 4 ASN A 72 LEU A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O LEU A 74 SHEET 3 AA1 4 VAL A 524 ILE A 528 1 O ILE A 526 N LEU A 38 SHEET 4 AA1 4 ALA A 560 LEU A 564 1 O LEU A 564 N TYR A 527 SHEET 1 AA2 2 GLY A 78 TRP A 79 0 SHEET 2 AA2 2 LEU A 125 ALA A 126 1 O LEU A 125 N TRP A 79 SHEET 1 AA3 4 THR A 164 VAL A 165 0 SHEET 2 AA3 4 VAL A 149 CYS A 159 -1 N CYS A 159 O THR A 164 SHEET 3 AA3 4 GLU A 184 ILE A 193 -1 O PHE A 192 N TYR A 150 SHEET 4 AA3 4 TRP A 420 GLY A 421 -1 O TRP A 420 N ILE A 193 SHEET 1 AA4 6 THR A 242 THR A 247 0 SHEET 2 AA4 6 ARG A 226 VAL A 236 -1 N ILE A 232 O VAL A 245 SHEET 3 AA4 6 GLY A 302 VAL A 310 -1 O VAL A 310 N ASN A 235 SHEET 4 AA4 6 GLU A 317 ALA A 323 -1 O ILE A 318 N ALA A 309 SHEET 5 AA4 6 TYR A 258 VAL A 261 1 N LEU A 259 O TRP A 321 SHEET 6 AA4 6 ALA A 334 ALA A 337 -1 O VAL A 335 N ALA A 260 SHEET 1 AA5 3 THR A 242 THR A 247 0 SHEET 2 AA5 3 ARG A 226 VAL A 236 -1 N ILE A 232 O VAL A 245 SHEET 3 AA5 3 GLY A 409 TYR A 415 -1 O GLU A 410 N GLU A 231 SHEET 1 AA6 2 SER A 423 ARG A 424 0 SHEET 2 AA6 2 THR A 489 PHE A 490 -1 O THR A 489 N ARG A 424 SHEET 1 AA7 4 VAL A 442 PRO A 444 0 SHEET 2 AA7 4 MET A 434 LEU A 437 -1 N VAL A 435 O MET A 443 SHEET 3 AA7 4 MET A 481 ARG A 485 -1 O LEU A 484 N THR A 436 SHEET 4 AA7 4 LYS A 475 VAL A 478 -1 N THR A 476 O ALA A 483 SHEET 1 AA8 5 ARG A 583 VAL A 586 0 SHEET 2 AA8 5 VAL A 569 VAL A 577 -1 N TYR A 576 O ASN A 584 SHEET 3 AA8 5 GLU A 611 LYS A 619 -1 O THR A 615 N ALA A 573 SHEET 4 AA8 5 ILE A 601 ASP A 606 -1 N ALA A 604 O LEU A 612 SHEET 5 AA8 5 ALA A 591 ARG A 595 -1 N ILE A 592 O LYS A 605 SHEET 1 AA9 3 ARG A 583 VAL A 586 0 SHEET 2 AA9 3 VAL A 569 VAL A 577 -1 N TYR A 576 O ASN A 584 SHEET 3 AA9 3 LEU A 656 GLU A 657 1 O LEU A 656 N LEU A 570 SHEET 1 AB1 4 LYS A 809 PRO A 817 0 SHEET 2 AB1 4 SER A 799 VAL A 806 -1 N THR A 800 O VAL A 816 SHEET 3 AB1 4 LEU A 854 VAL A 858 1 O LEU A 855 N GLN A 805 SHEET 4 AB1 4 LYS A 846 VAL A 850 -1 N VAL A 850 O LEU A 854 LINK O3' C B 75 P EYT B 101 1555 1555 1.56 LINK SG CYS A 159 ZN ZN A 901 1555 1555 2.75 LINK OD1 ASP A 162 ZN ZN A 901 1555 1555 2.06 LINK SG CYS A 176 ZN ZN A 901 1555 1555 2.22 LINK SG CYS A 179 ZN ZN A 901 1555 1555 2.67 CISPEP 1 LEU A 450 PRO A 451 0 2.00 CISPEP 2 LEU A 522 PRO A 523 0 2.26 CRYST1 89.230 77.190 90.820 90.00 102.58 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011207 0.000000 0.002501 0.00000 SCALE2 0.000000 0.012955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011282 0.00000 CONECT 1326 8445 CONECT 1348 8445 CONECT 1450 8445 CONECT 1481 8445 CONECT 8432 8471 CONECT 8445 1326 1348 1450 1481 CONECT 8446 8447 8448 CONECT 8447 8446 CONECT 8448 8446 8449 8450 CONECT 8449 8448 CONECT 8450 8448 8451 CONECT 8451 8450 CONECT 8452 8458 8463 CONECT 8453 8454 8463 8480 CONECT 8454 8453 8455 8482 CONECT 8455 8454 8458 8481 CONECT 8456 8480 8482 CONECT 8457 8459 8461 8467 CONECT 8458 8452 8455 CONECT 8459 8457 8460 8462 CONECT 8460 8459 8466 8485 CONECT 8461 8457 8485 CONECT 8462 8459 8464 8488 CONECT 8463 8452 8453 CONECT 8464 8462 8465 CONECT 8465 8464 8466 CONECT 8466 8460 8465 8489 CONECT 8467 8457 8487 CONECT 8468 8469 8489 CONECT 8469 8468 8470 CONECT 8470 8469 8490 8491 CONECT 8471 8432 8472 8473 8474 CONECT 8472 8471 CONECT 8473 8471 CONECT 8474 8471 8475 CONECT 8475 8474 8476 CONECT 8476 8475 8477 8483 CONECT 8477 8476 8478 8484 CONECT 8478 8477 8479 8486 CONECT 8479 8478 8480 8483 CONECT 8480 8453 8456 8479 CONECT 8481 8455 CONECT 8482 8454 8456 CONECT 8483 8476 8479 CONECT 8484 8477 8485 CONECT 8485 8460 8461 8484 8486 CONECT 8486 8478 8485 CONECT 8487 8467 CONECT 8488 8462 CONECT 8489 8466 8468 CONECT 8490 8470 CONECT 8491 8470 8492 CONECT 8492 8491 8493 8496 CONECT 8493 8492 8494 CONECT 8494 8493 8495 CONECT 8495 8494 8496 CONECT 8496 8492 8495 MASTER 390 0 3 34 37 0 0 6 8594 2 57 75 END