HEADER RNA BINDING PROTEIN 08-DEC-25 9TJU TITLE TERNARY COMPLEX OF E. COLI LEUCYL-TRNA SYNTHETASE BOUND TO TRNA(LEU) TITLE 2 AND LEUCINOL IN THE EDITING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LEUCYL-TRNA SYNTHETASE,LEURS; COMPND 5 EC: 6.1.1.4; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: E. COLI LEUCYL TRNA SYNTHETASE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRNA(LEU); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: E. COLI TRNA(LEU) ISOACCEPTOR UAA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: LEUS, B0642, JW0637; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 9 ORGANISM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-FLUC(DELTAI); SOURCE 11 EXPRESSION_SYSTEM_TAXID: 905932 KEYWDS LEUCINE TRNA LIGASE ANTIMICROBIAL TARGET TRNA AMINOACYLATION FOR KEYWDS 2 PROTEIN TRANSLATION, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.HOFFMANN,A.PALENCIA REVDAT 1 05-AUG-26 9TJU 0 JRNL AUTH G.HOFFMANN,M.DULIC,I.GRUIC-SOVULJ,A.PALENCIA JRNL TITL THE ZN DOMAIN ACTS AS A DYNAMIC SWITCH COORDINATING JRNL TITL 2 MULTIPLE-STEP AMINOACYLATION IN BACTERIAL LEUCYL-TRNA JRNL TITL 3 SYNTHETASE JRNL REF NUCLEIC ACIDS RES. 2026 JRNL REFN ESSN 1362-4962 JRNL DOI 10.1093/NAR/GKAG786 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.6 REMARK 3 NUMBER OF REFLECTIONS : 101684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 5083 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 12.00 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1939 REMARK 3 BIN R VALUE (WORKING SET) : 0.2832 REMARK 3 BIN FREE R VALUE : 0.2838 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 95 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6517 REMARK 3 NUCLEIC ACID ATOMS : 1711 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 777 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.70080 REMARK 3 B22 (A**2) : 1.67310 REMARK 3 B33 (A**2) : -0.97230 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.257 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.153 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.138 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.144 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.133 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8666 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12133 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2736 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1228 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8666 ; 10.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1174 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7039 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 0.85 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.57 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.72 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 10.7262 -6.6566 8.8499 REMARK 3 T TENSOR REMARK 3 T11: -0.0268 T22: 0.0824 REMARK 3 T33: -0.0794 T12: 0.0303 REMARK 3 T13: 0.0323 T23: 0.0913 REMARK 3 L TENSOR REMARK 3 L11: 0.4402 L22: 1.223 REMARK 3 L33: 0 L12: 0.4377 REMARK 3 L13: 0.1788 L23: 0.3646 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.0869 S13: -0.0275 REMARK 3 S21: -0.1509 S22: -0.1876 S23: -0.1949 REMARK 3 S31: -0.0472 S32: 0.1028 S33: 0.1331 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 0.2768 17.6394 19.2105 REMARK 3 T TENSOR REMARK 3 T11: -0.0285 T22: 0.016 REMARK 3 T33: -0.0257 T12: 0.0135 REMARK 3 T13: 0.0098 T23: 0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.074 L22: 0.1776 REMARK 3 L33: 0.1715 L12: -0.0086 REMARK 3 L13: 0.0736 L23: 0.0638 REMARK 3 S TENSOR REMARK 3 S11: -0.0304 S12: 0.0134 S13: 0.0398 REMARK 3 S21: -0.0631 S22: 0.0163 S23: 0.0047 REMARK 3 S31: -0.0142 S32: 0.0205 S33: 0.0141 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9TJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1292152749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96546 REMARK 200 MONOCHROMATOR : C(110) REMARK 200 OPTICS : VERTICAL CRL / HORIZONTAL CRL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC 20240123 REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101703 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.782 REMARK 200 RESOLUTION RANGE LOW (A) : 70.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.7 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 1.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH5.0, 0.2M REMARK 280 AMMONIUM CHLORIDE, 20-24% PEG 6000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.34700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.81950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.77250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.81950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.34700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.77250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ASN A 157 REMARK 465 TRP A 158 REMARK 465 CYS A 159 REMARK 465 PRO A 160 REMARK 465 ASN A 161 REMARK 465 ASP A 162 REMARK 465 GLN A 163 REMARK 465 THR A 164 REMARK 465 VAL A 165 REMARK 465 LEU A 166 REMARK 465 ALA A 167 REMARK 465 ASN A 168 REMARK 465 GLU A 169 REMARK 465 GLN A 170 REMARK 465 VAL A 171 REMARK 465 ILE A 172 REMARK 465 ASP A 173 REMARK 465 GLY A 174 REMARK 465 CYS A 175 REMARK 465 CYS A 176 REMARK 465 TRP A 177 REMARK 465 ARG A 178 REMARK 465 CYS A 179 REMARK 465 ASP A 180 REMARK 465 THR A 181 REMARK 465 LYS A 182 REMARK 465 VAL A 183 REMARK 465 GLU A 184 REMARK 465 ARG A 185 REMARK 465 THR A 288 REMARK 465 LYS A 289 REMARK 465 VAL A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ALA A 293 REMARK 465 GLU A 294 REMARK 465 MET A 295 REMARK 465 ALA A 296 REMARK 465 THR A 297 REMARK 465 MET A 298 REMARK 465 U B 32 REMARK 465 U B 33 REMARK 465 U B 34 REMARK 465 A B 35 REMARK 465 A B 36 REMARK 465 A B 37 REMARK 465 A B 38 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 186 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G B 1 P G B 1 OP3 -0.124 REMARK 500 A B 14 O5' A B 14 C5' -0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G B 1 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 94 59.07 -117.46 REMARK 500 TYR A 132 -62.38 -90.78 REMARK 500 ASP A 240 36.27 -83.24 REMARK 500 GLN A 425 54.77 -90.14 REMARK 500 CYS A 505 56.20 -158.64 REMARK 500 MET A 536 -101.40 -115.03 REMARK 500 ASP A 742 47.35 -81.78 REMARK 500 LYS A 853 -44.76 -131.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 9TJU A 1 860 UNP P07813 SYL_ECOLI 1 860 DBREF1 9TJU B 1 76 GB LT906474.1 DBREF2 9TJU B 1231762938 1919401 1919487 SEQADV 9TJU MET A -19 UNP P07813 INITIATING METHIONINE SEQADV 9TJU GLY A -18 UNP P07813 EXPRESSION TAG SEQADV 9TJU SER A -17 UNP P07813 EXPRESSION TAG SEQADV 9TJU SER A -16 UNP P07813 EXPRESSION TAG SEQADV 9TJU HIS A -15 UNP P07813 EXPRESSION TAG SEQADV 9TJU HIS A -14 UNP P07813 EXPRESSION TAG SEQADV 9TJU HIS A -13 UNP P07813 EXPRESSION TAG SEQADV 9TJU HIS A -12 UNP P07813 EXPRESSION TAG SEQADV 9TJU HIS A -11 UNP P07813 EXPRESSION TAG SEQADV 9TJU HIS A -10 UNP P07813 EXPRESSION TAG SEQADV 9TJU SER A -9 UNP P07813 EXPRESSION TAG SEQADV 9TJU SER A -8 UNP P07813 EXPRESSION TAG SEQADV 9TJU GLY A -7 UNP P07813 EXPRESSION TAG SEQADV 9TJU LEU A -6 UNP P07813 EXPRESSION TAG SEQADV 9TJU VAL A -5 UNP P07813 EXPRESSION TAG SEQADV 9TJU PRO A -4 UNP P07813 EXPRESSION TAG SEQADV 9TJU ARG A -3 UNP P07813 EXPRESSION TAG SEQADV 9TJU GLY A -2 UNP P07813 EXPRESSION TAG SEQADV 9TJU SER A -1 UNP P07813 EXPRESSION TAG SEQADV 9TJU HIS A 0 UNP P07813 EXPRESSION TAG SEQRES 1 A 880 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 880 LEU VAL PRO ARG GLY SER HIS MET GLN GLU GLN TYR ARG SEQRES 3 A 880 PRO GLU GLU ILE GLU SER LYS VAL GLN LEU HIS TRP ASP SEQRES 4 A 880 GLU LYS ARG THR PHE GLU VAL THR GLU ASP GLU SER LYS SEQRES 5 A 880 GLU LYS TYR TYR CYS LEU SER MET LEU PRO TYR PRO SER SEQRES 6 A 880 GLY ARG LEU HIS MET GLY HIS VAL ARG ASN TYR THR ILE SEQRES 7 A 880 GLY ASP VAL ILE ALA ARG TYR GLN ARG MET LEU GLY LYS SEQRES 8 A 880 ASN VAL LEU GLN PRO ILE GLY TRP ASP ALA PHE GLY LEU SEQRES 9 A 880 PRO ALA GLU GLY ALA ALA VAL LYS ASN ASN THR ALA PRO SEQRES 10 A 880 ALA PRO TRP THR TYR ASP ASN ILE ALA TYR MET LYS ASN SEQRES 11 A 880 GLN LEU LYS MET LEU GLY PHE GLY TYR ASP TRP SER ARG SEQRES 12 A 880 GLU LEU ALA THR CYS THR PRO GLU TYR TYR ARG TRP GLU SEQRES 13 A 880 GLN LYS PHE PHE THR GLU LEU TYR LYS LYS GLY LEU VAL SEQRES 14 A 880 TYR LYS LYS THR SER ALA VAL ASN TRP CYS PRO ASN ASP SEQRES 15 A 880 GLN THR VAL LEU ALA ASN GLU GLN VAL ILE ASP GLY CYS SEQRES 16 A 880 CYS TRP ARG CYS ASP THR LYS VAL GLU ARG LYS GLU ILE SEQRES 17 A 880 PRO GLN TRP PHE ILE LYS ILE THR ALA TYR ALA ASP GLU SEQRES 18 A 880 LEU LEU ASN ASP LEU ASP LYS LEU ASP HIS TRP PRO ASP SEQRES 19 A 880 THR VAL LYS THR MET GLN ARG ASN TRP ILE GLY ARG SER SEQRES 20 A 880 GLU GLY VAL GLU ILE THR PHE ASN VAL ASN ASP TYR ASP SEQRES 21 A 880 ASN THR LEU THR VAL TYR THR THR ARG PRO ASP THR PHE SEQRES 22 A 880 MET GLY CYS THR TYR LEU ALA VAL ALA ALA GLY HIS PRO SEQRES 23 A 880 LEU ALA GLN LYS ALA ALA GLU ASN ASN PRO GLU LEU ALA SEQRES 24 A 880 ALA PHE ILE ASP GLU CYS ARG ASN THR LYS VAL ALA GLU SEQRES 25 A 880 ALA GLU MET ALA THR MET GLU LYS LYS GLY VAL ASP THR SEQRES 26 A 880 GLY PHE LYS ALA VAL HIS PRO LEU THR GLY GLU GLU ILE SEQRES 27 A 880 PRO VAL TRP ALA ALA ASN PHE VAL LEU MET GLU TYR GLY SEQRES 28 A 880 THR GLY ALA VAL MET ALA VAL PRO GLY HIS ASP GLN ARG SEQRES 29 A 880 ASP TYR GLU PHE ALA SER LYS TYR GLY LEU ASN ILE LYS SEQRES 30 A 880 PRO VAL ILE LEU ALA ALA ASP GLY SER GLU PRO ASP LEU SEQRES 31 A 880 SER GLN GLN ALA LEU THR GLU LYS GLY VAL LEU PHE ASN SEQRES 32 A 880 SER GLY GLU PHE ASN GLY LEU ASP HIS GLU ALA ALA PHE SEQRES 33 A 880 ASN ALA ILE ALA ASP LYS LEU THR ALA MET GLY VAL GLY SEQRES 34 A 880 GLU ARG LYS VAL ASN TYR ARG LEU ARG ASP TRP GLY VAL SEQRES 35 A 880 SER ARG GLN ARG TYR TRP GLY ALA PRO ILE PRO MET VAL SEQRES 36 A 880 THR LEU GLU ASP GLY THR VAL MET PRO THR PRO ASP ASP SEQRES 37 A 880 GLN LEU PRO VAL ILE LEU PRO GLU ASP VAL VAL MET ASP SEQRES 38 A 880 GLY ILE THR SER PRO ILE LYS ALA ASP PRO GLU TRP ALA SEQRES 39 A 880 LYS THR THR VAL ASN GLY MET PRO ALA LEU ARG GLU THR SEQRES 40 A 880 ASP THR PHE ASP THR PHE MET GLU SER SER TRP TYR TYR SEQRES 41 A 880 ALA ARG TYR THR CYS PRO GLN TYR LYS GLU GLY MET LEU SEQRES 42 A 880 ASP SER GLU ALA ALA ASN TYR TRP LEU PRO VAL ASP ILE SEQRES 43 A 880 TYR ILE GLY GLY ILE GLU HIS ALA ILE MET HIS LEU LEU SEQRES 44 A 880 TYR PHE ARG PHE PHE HIS LYS LEU MET ARG ASP ALA GLY SEQRES 45 A 880 MET VAL ASN SER ASP GLU PRO ALA LYS GLN LEU LEU CYS SEQRES 46 A 880 GLN GLY MET VAL LEU ALA ASP ALA PHE TYR TYR VAL GLY SEQRES 47 A 880 GLU ASN GLY GLU ARG ASN TRP VAL SER PRO VAL ASP ALA SEQRES 48 A 880 ILE VAL GLU ARG ASP GLU LYS GLY ARG ILE VAL LYS ALA SEQRES 49 A 880 LYS ASP ALA ALA GLY HIS GLU LEU VAL TYR THR GLY MET SEQRES 50 A 880 SER LYS MET SER LYS SER LYS ASN ASN GLY ILE ASP PRO SEQRES 51 A 880 GLN VAL MET VAL GLU ARG TYR GLY ALA ASP THR VAL ARG SEQRES 52 A 880 LEU PHE MET MET PHE ALA SER PRO ALA ASP MET THR LEU SEQRES 53 A 880 GLU TRP GLN GLU SER GLY VAL GLU GLY ALA ASN ARG PHE SEQRES 54 A 880 LEU LYS ARG VAL TRP LYS LEU VAL TYR GLU HIS THR ALA SEQRES 55 A 880 LYS GLY ASP VAL ALA ALA LEU ASN VAL ASP ALA LEU THR SEQRES 56 A 880 GLU ASN GLN LYS ALA LEU ARG ARG ASP VAL HIS LYS THR SEQRES 57 A 880 ILE ALA LYS VAL THR ASP ASP ILE GLY ARG ARG GLN THR SEQRES 58 A 880 PHE ASN THR ALA ILE ALA ALA ILE MET GLU LEU MET ASN SEQRES 59 A 880 LYS LEU ALA LYS ALA PRO THR ASP GLY GLU GLN ASP ARG SEQRES 60 A 880 ALA LEU MET GLN GLU ALA LEU LEU ALA VAL VAL ARG MET SEQRES 61 A 880 LEU ASN PRO PHE THR PRO HIS ILE CYS PHE THR LEU TRP SEQRES 62 A 880 GLN GLU LEU LYS GLY GLU GLY ASP ILE ASP ASN ALA PRO SEQRES 63 A 880 TRP PRO VAL ALA ASP GLU LYS ALA MET VAL GLU ASP SER SEQRES 64 A 880 THR LEU VAL VAL VAL GLN VAL ASN GLY LYS VAL ARG ALA SEQRES 65 A 880 LYS ILE THR VAL PRO VAL ASP ALA THR GLU GLU GLN VAL SEQRES 66 A 880 ARG GLU ARG ALA GLY GLN GLU HIS LEU VAL ALA LYS TYR SEQRES 67 A 880 LEU ASP GLY VAL THR VAL ARG LYS VAL ILE TYR VAL PRO SEQRES 68 A 880 GLY LYS LEU LEU ASN LEU VAL VAL GLY SEQRES 1 B 87 G C C C G G A U G G U G G SEQRES 2 B 87 A A U C G G U A G A C A C SEQRES 3 B 87 A A G G G A U U U A A A A SEQRES 4 B 87 U C C C U C G G C G U U C SEQRES 5 B 87 G C G C U G U G C G G G U SEQRES 6 B 87 U C A A G U C C C G C U C SEQRES 7 B 87 C G G G U A C C A HET EDO A 901 4 HET EDO A 902 4 HET DCL A 903 8 HET ACT A 904 4 HET PGE A 905 10 HET EDO A 906 4 HET PGE A 907 10 HETNAM EDO 1,2-ETHANEDIOL HETNAM DCL 2-AMINO-4-METHYL-PENTAN-1-OL HETNAM ACT ACETATE ION HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN DCL LEUCINOL FORMUL 3 EDO 3(C2 H6 O2) FORMUL 5 DCL C6 H15 N O FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 PGE 2(C6 H14 O4) FORMUL 10 HOH *777(H2 O) HELIX 1 AA1 ARG A 6 GLU A 9 5 4 HELIX 2 AA2 ILE A 10 ARG A 22 1 13 HELIX 3 AA3 HIS A 49 LEU A 69 1 21 HELIX 4 AA4 GLY A 83 ASN A 93 1 11 HELIX 5 AA5 ALA A 96 LEU A 115 1 20 HELIX 6 AA6 ASP A 120 GLU A 124 5 5 HELIX 7 AA7 THR A 129 LYS A 146 1 18 HELIX 8 AA8 ILE A 195 ALA A 197 5 3 HELIX 9 AA9 TYR A 198 ASP A 205 1 8 HELIX 10 AB1 LEU A 206 LEU A 209 5 4 HELIX 11 AB2 PRO A 213 GLY A 225 1 13 HELIX 12 AB3 ARG A 249 CYS A 256 5 8 HELIX 13 AB4 HIS A 265 GLU A 273 1 9 HELIX 14 AB5 ASN A 275 ASN A 287 1 13 HELIX 15 AB6 ASP A 342 GLY A 353 1 12 HELIX 16 AB7 SER A 384 ASN A 388 5 5 HELIX 17 AB8 ASP A 391 MET A 406 1 16 HELIX 18 AB9 PRO A 446 LEU A 450 5 5 HELIX 19 AC1 SER A 465 ASP A 470 1 6 HELIX 20 AC2 THR A 492 SER A 497 1 6 HELIX 21 AC3 TRP A 498 TYR A 503 1 6 HELIX 22 AC4 ASP A 514 LEU A 522 1 9 HELIX 23 AC5 GLY A 530 ALA A 534 5 5 HELIX 24 AC6 MET A 536 ALA A 551 1 16 HELIX 25 AC7 SER A 587 ALA A 591 5 5 HELIX 26 AC8 ASP A 629 GLY A 638 1 10 HELIX 27 AC9 GLY A 638 ALA A 649 1 12 HELIX 28 AD1 GLN A 659 LYS A 683 1 25 HELIX 29 AD2 THR A 695 ARG A 718 1 24 HELIX 30 AD3 THR A 721 LYS A 738 1 18 HELIX 31 AD4 GLY A 743 ASN A 762 1 20 HELIX 32 AD5 THR A 765 LEU A 776 1 12 HELIX 33 AD6 ASP A 781 ALA A 785 5 5 HELIX 34 AD7 GLU A 792 VAL A 796 5 5 HELIX 35 AD8 THR A 821 GLN A 831 1 11 HELIX 36 AD9 GLU A 832 LYS A 837 1 6 SHEET 1 AA1 4 ASN A 72 LEU A 74 0 SHEET 2 AA1 4 LYS A 34 SER A 39 1 N TYR A 35 O LEU A 74 SHEET 3 AA1 4 VAL A 524 ILE A 528 1 O ILE A 526 N LEU A 38 SHEET 4 AA1 4 ALA A 560 LEU A 564 1 O LYS A 561 N VAL A 524 SHEET 1 AA2 2 GLY A 78 TRP A 79 0 SHEET 2 AA2 2 LEU A 125 ALA A 126 1 O LEU A 125 N TRP A 79 SHEET 1 AA3 3 VAL A 149 SER A 154 0 SHEET 2 AA3 3 ILE A 188 ILE A 193 -1 O PHE A 192 N TYR A 150 SHEET 3 AA3 3 TRP A 420 GLY A 421 -1 O TRP A 420 N ILE A 193 SHEET 1 AA4 6 THR A 242 THR A 247 0 SHEET 2 AA4 6 ARG A 226 VAL A 236 -1 N PHE A 234 O LEU A 243 SHEET 3 AA4 6 GLY A 302 VAL A 310 -1 O VAL A 310 N ASN A 235 SHEET 4 AA4 6 GLU A 317 ALA A 323 -1 O ALA A 322 N VAL A 303 SHEET 5 AA4 6 TYR A 258 VAL A 261 1 N LEU A 259 O TRP A 321 SHEET 6 AA4 6 ALA A 334 ALA A 337 -1 O VAL A 335 N ALA A 260 SHEET 1 AA5 3 THR A 242 THR A 247 0 SHEET 2 AA5 3 ARG A 226 VAL A 236 -1 N PHE A 234 O LEU A 243 SHEET 3 AA5 3 GLY A 409 TYR A 415 -1 O ASN A 414 N SER A 227 SHEET 1 AA6 2 SER A 423 ARG A 424 0 SHEET 2 AA6 2 THR A 489 PHE A 490 -1 O THR A 489 N ARG A 424 SHEET 1 AA7 4 VAL A 442 PRO A 444 0 SHEET 2 AA7 4 MET A 434 LEU A 437 -1 N VAL A 435 O MET A 443 SHEET 3 AA7 4 MET A 481 ARG A 485 -1 O LEU A 484 N THR A 436 SHEET 4 AA7 4 LYS A 475 VAL A 478 -1 N VAL A 478 O MET A 481 SHEET 1 AA8 5 ARG A 583 VAL A 586 0 SHEET 2 AA8 5 VAL A 569 VAL A 577 -1 N TYR A 576 O ASN A 584 SHEET 3 AA8 5 GLU A 611 LYS A 619 -1 O VAL A 613 N TYR A 575 SHEET 4 AA8 5 ILE A 601 LYS A 605 -1 N ALA A 604 O LEU A 612 SHEET 5 AA8 5 ILE A 592 ARG A 595 -1 N ILE A 592 O LYS A 605 SHEET 1 AA9 3 ARG A 583 VAL A 586 0 SHEET 2 AA9 3 VAL A 569 VAL A 577 -1 N TYR A 576 O ASN A 584 SHEET 3 AA9 3 LEU A 656 GLU A 657 1 O LEU A 656 N LEU A 570 SHEET 1 AB1 4 LYS A 809 PRO A 817 0 SHEET 2 AB1 4 SER A 799 VAL A 806 -1 N VAL A 802 O ILE A 814 SHEET 3 AB1 4 LEU A 854 GLY A 860 1 O LEU A 855 N GLN A 805 SHEET 4 AB1 4 THR A 843 VAL A 850 -1 N ILE A 848 O ASN A 856 CISPEP 1 LEU A 450 PRO A 451 0 3.41 CISPEP 2 LEU A 522 PRO A 523 0 -6.42 CRYST1 76.694 119.545 141.639 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008365 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007060 0.00000 CONECT 8273 8274 8275 CONECT 8274 8273 CONECT 8275 8273 8276 CONECT 8276 8275 CONECT 8277 8278 8279 CONECT 8278 8277 CONECT 8279 8277 8280 CONECT 8280 8279 CONECT 8281 8282 CONECT 8282 8281 8283 8284 CONECT 8283 8282 8288 CONECT 8284 8282 8285 CONECT 8285 8284 8286 8287 CONECT 8286 8285 CONECT 8287 8285 CONECT 8288 8283 CONECT 8289 8290 8291 8292 CONECT 8290 8289 CONECT 8291 8289 CONECT 8292 8289 CONECT 8293 8294 8295 CONECT 8294 8293 CONECT 8295 8293 8296 CONECT 8296 8295 8297 CONECT 8297 8296 8298 CONECT 8298 8297 8302 CONECT 8299 8300 CONECT 8300 8299 8301 CONECT 8301 8300 8302 CONECT 8302 8298 8301 CONECT 8303 8304 8305 CONECT 8304 8303 CONECT 8305 8303 8306 CONECT 8306 8305 CONECT 8307 8308 8309 CONECT 8308 8307 CONECT 8309 8307 8310 CONECT 8310 8309 8311 CONECT 8311 8310 8312 CONECT 8312 8311 8316 CONECT 8313 8314 CONECT 8314 8313 8315 CONECT 8315 8314 8316 CONECT 8316 8312 8315 MASTER 389 0 7 36 36 0 0 6 9049 2 44 75 END