data_9TKZ # _entry.id 9TKZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9TKZ pdb_00009tkz 10.2210/pdb9tkz/pdb WWPDB D_1292152476 ? ? EMDB EMD-56040 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-02-18 ? 2 'EM metadata' 1 0 2026-02-18 ? 3 FSC 1 0 2026-02-18 ? 4 'Half map' 1 0 2026-02-18 1 5 'Half map' 1 0 2026-02-18 2 6 Image 1 0 2026-02-18 ? 7 Mask 1 0 2026-02-18 1 8 'Primary map' 1 0 2026-02-18 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 Mask repository 'Initial release' ? ? 8 8 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9TKZ _pdbx_database_status.recvd_initial_deposition_date 2025-12-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'TAF15 amyloid filament fold D' _pdbx_database_related.db_id EMD-56040 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email bfalcon@mrc-lmb.cam.ac.uk _pdbx_contact_author.name_first Benjamin _pdbx_contact_author.name_last Ryskeldi-Falcon _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-8176-2618 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Tetter, S.' 1 0000-0002-4175-0225 'Varghese, N.R.' 2 0009-0007-3687-0912 'Ryskeldi-Falcon, B.' 3 0000-0002-8176-2618 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Biorxiv _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2692-8205 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Distinct TAF15 amyloid filament folds define multiple subtypes of FTLD-TAF15.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.64898/2026.01.12.698957 _citation.pdbx_database_id_PubMed 41648099 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tetter, S.' 1 ? primary 'Varghese, N.R.' 2 ? primary 'Murzin, A.G.' 3 ? primary 'De Coster, W.' 4 0000-0002-5248-8197 primary 'Van den Broeck, M.' 5 ? primary 'Roeber, S.' 6 ? primary 'Joseph, J.T.' 7 ? primary 'Newell, K.' 8 ? primary 'Castellani, R.' 9 ? primary 'Das, S.' 10 ? primary 'Ang, L.C.' 11 ? primary 'Synofzik, M.' 12 0000-0002-2280-7273 primary 'Herms, J.' 13 ? primary 'Rademakers, R.' 14 ? primary 'Ghetti, B.' 15 ? primary 'Lashley, T.' 16 ? primary 'Mackenzie, I.R.A.' 17 ? primary 'Neumann, M.' 18 ? primary 'Ryskeldi-Falcon, B.' 19 0000-0002-8176-2618 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'TATA-binding protein-associated factor 2N' _entity.formula_weight 10131.007 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'Amyloid filament formed by TAF15. Each chain is comprised of TAF15 residues 6-100' # _entity_name_com.entity_id 1 _entity_name_com.name '68 kDa TATA-binding protein-associated factor,TAF(II)68,TAFII68,RNA-binding protein 56' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNN QGQQQNMESSGSQGG ; _entity_poly.pdbx_seq_one_letter_code_can ;SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNN QGQQQNMESSGSQGG ; _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 GLY n 1 4 GLN n 1 5 SER n 1 6 GLY n 1 7 GLY n 1 8 GLU n 1 9 GLN n 1 10 GLN n 1 11 SER n 1 12 TYR n 1 13 SER n 1 14 THR n 1 15 TYR n 1 16 GLY n 1 17 ASN n 1 18 PRO n 1 19 GLY n 1 20 SER n 1 21 GLN n 1 22 GLY n 1 23 TYR n 1 24 GLY n 1 25 GLN n 1 26 ALA n 1 27 SER n 1 28 GLN n 1 29 SER n 1 30 TYR n 1 31 SER n 1 32 GLY n 1 33 TYR n 1 34 GLY n 1 35 GLN n 1 36 THR n 1 37 THR n 1 38 ASP n 1 39 SER n 1 40 SER n 1 41 TYR n 1 42 GLY n 1 43 GLN n 1 44 ASN n 1 45 TYR n 1 46 SER n 1 47 GLY n 1 48 TYR n 1 49 SER n 1 50 SER n 1 51 TYR n 1 52 GLY n 1 53 GLN n 1 54 SER n 1 55 GLN n 1 56 SER n 1 57 GLY n 1 58 TYR n 1 59 SER n 1 60 GLN n 1 61 SER n 1 62 TYR n 1 63 GLY n 1 64 GLY n 1 65 TYR n 1 66 GLU n 1 67 ASN n 1 68 GLN n 1 69 LYS n 1 70 GLN n 1 71 SER n 1 72 SER n 1 73 TYR n 1 74 SER n 1 75 GLN n 1 76 GLN n 1 77 PRO n 1 78 TYR n 1 79 ASN n 1 80 ASN n 1 81 GLN n 1 82 GLY n 1 83 GLN n 1 84 GLN n 1 85 GLN n 1 86 ASN n 1 87 MET n 1 88 GLU n 1 89 SER n 1 90 SER n 1 91 GLY n 1 92 SER n 1 93 GLN n 1 94 GLY n 1 95 GLY n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 95 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 6 6 SER SER A . n A 1 2 TYR 2 7 7 TYR TYR A . n A 1 3 GLY 3 8 8 GLY GLY A . n A 1 4 GLN 4 9 9 GLN GLN A . n A 1 5 SER 5 10 10 SER SER A . n A 1 6 GLY 6 11 11 GLY GLY A . n A 1 7 GLY 7 12 12 GLY GLY A . n A 1 8 GLU 8 13 13 GLU GLU A . n A 1 9 GLN 9 14 14 GLN GLN A . n A 1 10 GLN 10 15 15 GLN GLN A . n A 1 11 SER 11 16 16 SER SER A . n A 1 12 TYR 12 17 17 TYR TYR A . n A 1 13 SER 13 18 18 SER SER A . n A 1 14 THR 14 19 19 THR THR A . n A 1 15 TYR 15 20 20 TYR TYR A . n A 1 16 GLY 16 21 21 GLY GLY A . n A 1 17 ASN 17 22 22 ASN ASN A . n A 1 18 PRO 18 23 23 PRO PRO A . n A 1 19 GLY 19 24 24 GLY GLY A . n A 1 20 SER 20 25 25 SER SER A . n A 1 21 GLN 21 26 26 GLN GLN A . n A 1 22 GLY 22 27 27 GLY GLY A . n A 1 23 TYR 23 28 28 TYR TYR A . n A 1 24 GLY 24 29 29 GLY GLY A . n A 1 25 GLN 25 30 30 GLN GLN A . n A 1 26 ALA 26 31 31 ALA ALA A . n A 1 27 SER 27 32 32 SER SER A . n A 1 28 GLN 28 33 33 GLN GLN A . n A 1 29 SER 29 34 34 SER SER A . n A 1 30 TYR 30 35 35 TYR TYR A . n A 1 31 SER 31 36 36 SER SER A . n A 1 32 GLY 32 37 37 GLY GLY A . n A 1 33 TYR 33 38 38 TYR TYR A . n A 1 34 GLY 34 39 39 GLY GLY A . n A 1 35 GLN 35 40 40 GLN GLN A . n A 1 36 THR 36 41 41 THR THR A . n A 1 37 THR 37 42 42 THR THR A . n A 1 38 ASP 38 43 43 ASP ASP A . n A 1 39 SER 39 44 44 SER SER A . n A 1 40 SER 40 45 45 SER SER A . n A 1 41 TYR 41 46 46 TYR TYR A . n A 1 42 GLY 42 47 47 GLY GLY A . n A 1 43 GLN 43 48 48 GLN GLN A . n A 1 44 ASN 44 49 49 ASN ASN A . n A 1 45 TYR 45 50 50 TYR TYR A . n A 1 46 SER 46 51 51 SER SER A . n A 1 47 GLY 47 52 52 GLY GLY A . n A 1 48 TYR 48 53 53 TYR TYR A . n A 1 49 SER 49 54 54 SER SER A . n A 1 50 SER 50 55 55 SER SER A . n A 1 51 TYR 51 56 56 TYR TYR A . n A 1 52 GLY 52 57 57 GLY GLY A . n A 1 53 GLN 53 58 58 GLN GLN A . n A 1 54 SER 54 59 59 SER SER A . n A 1 55 GLN 55 60 60 GLN GLN A . n A 1 56 SER 56 61 61 SER SER A . n A 1 57 GLY 57 62 62 GLY GLY A . n A 1 58 TYR 58 63 63 TYR TYR A . n A 1 59 SER 59 64 64 SER SER A . n A 1 60 GLN 60 65 65 GLN GLN A . n A 1 61 SER 61 66 66 SER SER A . n A 1 62 TYR 62 67 67 TYR TYR A . n A 1 63 GLY 63 68 68 GLY GLY A . n A 1 64 GLY 64 69 69 GLY GLY A . n A 1 65 TYR 65 70 70 TYR TYR A . n A 1 66 GLU 66 71 71 GLU GLU A . n A 1 67 ASN 67 72 72 ASN ASN A . n A 1 68 GLN 68 73 73 GLN GLN A . n A 1 69 LYS 69 74 74 LYS LYS A . n A 1 70 GLN 70 75 75 GLN GLN A . n A 1 71 SER 71 76 76 SER SER A . n A 1 72 SER 72 77 77 SER SER A . n A 1 73 TYR 73 78 78 TYR TYR A . n A 1 74 SER 74 79 79 SER SER A . n A 1 75 GLN 75 80 80 GLN GLN A . n A 1 76 GLN 76 81 81 GLN GLN A . n A 1 77 PRO 77 82 82 PRO PRO A . n A 1 78 TYR 78 83 83 TYR TYR A . n A 1 79 ASN 79 84 84 ASN ASN A . n A 1 80 ASN 80 85 85 ASN ASN A . n A 1 81 GLN 81 86 86 GLN GLN A . n A 1 82 GLY 82 87 87 GLY GLY A . n A 1 83 GLN 83 88 88 GLN GLN A . n A 1 84 GLN 84 89 89 GLN GLN A . n A 1 85 GLN 85 90 90 GLN GLN A . n A 1 86 ASN 86 91 91 ASN ASN A . n A 1 87 MET 87 92 92 MET MET A . n A 1 88 GLU 88 93 93 GLU GLU A . n A 1 89 SER 89 94 94 SER SER A . n A 1 90 SER 90 95 95 SER SER A . n A 1 91 GLY 91 96 96 GLY GLY A . n A 1 92 SER 92 97 97 SER SER A . n A 1 93 GLN 93 98 98 GLN GLN A . n A 1 94 GLY 94 99 99 GLY GLY A . n A 1 95 GLY 95 100 100 GLY GLY A . n B 1 1 SER 1 6 6 SER SER B . n B 1 2 TYR 2 7 7 TYR TYR B . n B 1 3 GLY 3 8 8 GLY GLY B . n B 1 4 GLN 4 9 9 GLN GLN B . n B 1 5 SER 5 10 10 SER SER B . n B 1 6 GLY 6 11 11 GLY GLY B . n B 1 7 GLY 7 12 12 GLY GLY B . n B 1 8 GLU 8 13 13 GLU GLU B . n B 1 9 GLN 9 14 14 GLN GLN B . n B 1 10 GLN 10 15 15 GLN GLN B . n B 1 11 SER 11 16 16 SER SER B . n B 1 12 TYR 12 17 17 TYR TYR B . n B 1 13 SER 13 18 18 SER SER B . n B 1 14 THR 14 19 19 THR THR B . n B 1 15 TYR 15 20 20 TYR TYR B . n B 1 16 GLY 16 21 21 GLY GLY B . n B 1 17 ASN 17 22 22 ASN ASN B . n B 1 18 PRO 18 23 23 PRO PRO B . n B 1 19 GLY 19 24 24 GLY GLY B . n B 1 20 SER 20 25 25 SER SER B . n B 1 21 GLN 21 26 26 GLN GLN B . n B 1 22 GLY 22 27 27 GLY GLY B . n B 1 23 TYR 23 28 28 TYR TYR B . n B 1 24 GLY 24 29 29 GLY GLY B . n B 1 25 GLN 25 30 30 GLN GLN B . n B 1 26 ALA 26 31 31 ALA ALA B . n B 1 27 SER 27 32 32 SER SER B . n B 1 28 GLN 28 33 33 GLN GLN B . n B 1 29 SER 29 34 34 SER SER B . n B 1 30 TYR 30 35 35 TYR TYR B . n B 1 31 SER 31 36 36 SER SER B . n B 1 32 GLY 32 37 37 GLY GLY B . n B 1 33 TYR 33 38 38 TYR TYR B . n B 1 34 GLY 34 39 39 GLY GLY B . n B 1 35 GLN 35 40 40 GLN GLN B . n B 1 36 THR 36 41 41 THR THR B . n B 1 37 THR 37 42 42 THR THR B . n B 1 38 ASP 38 43 43 ASP ASP B . n B 1 39 SER 39 44 44 SER SER B . n B 1 40 SER 40 45 45 SER SER B . n B 1 41 TYR 41 46 46 TYR TYR B . n B 1 42 GLY 42 47 47 GLY GLY B . n B 1 43 GLN 43 48 48 GLN GLN B . n B 1 44 ASN 44 49 49 ASN ASN B . n B 1 45 TYR 45 50 50 TYR TYR B . n B 1 46 SER 46 51 51 SER SER B . n B 1 47 GLY 47 52 52 GLY GLY B . n B 1 48 TYR 48 53 53 TYR TYR B . n B 1 49 SER 49 54 54 SER SER B . n B 1 50 SER 50 55 55 SER SER B . n B 1 51 TYR 51 56 56 TYR TYR B . n B 1 52 GLY 52 57 57 GLY GLY B . n B 1 53 GLN 53 58 58 GLN GLN B . n B 1 54 SER 54 59 59 SER SER B . n B 1 55 GLN 55 60 60 GLN GLN B . n B 1 56 SER 56 61 61 SER SER B . n B 1 57 GLY 57 62 62 GLY GLY B . n B 1 58 TYR 58 63 63 TYR TYR B . n B 1 59 SER 59 64 64 SER SER B . n B 1 60 GLN 60 65 65 GLN GLN B . n B 1 61 SER 61 66 66 SER SER B . n B 1 62 TYR 62 67 67 TYR TYR B . n B 1 63 GLY 63 68 68 GLY GLY B . n B 1 64 GLY 64 69 69 GLY GLY B . n B 1 65 TYR 65 70 70 TYR TYR B . n B 1 66 GLU 66 71 71 GLU GLU B . n B 1 67 ASN 67 72 72 ASN ASN B . n B 1 68 GLN 68 73 73 GLN GLN B . n B 1 69 LYS 69 74 74 LYS LYS B . n B 1 70 GLN 70 75 75 GLN GLN B . n B 1 71 SER 71 76 76 SER SER B . n B 1 72 SER 72 77 77 SER SER B . n B 1 73 TYR 73 78 78 TYR TYR B . n B 1 74 SER 74 79 79 SER SER B . n B 1 75 GLN 75 80 80 GLN GLN B . n B 1 76 GLN 76 81 81 GLN GLN B . n B 1 77 PRO 77 82 82 PRO PRO B . n B 1 78 TYR 78 83 83 TYR TYR B . n B 1 79 ASN 79 84 84 ASN ASN B . n B 1 80 ASN 80 85 85 ASN ASN B . n B 1 81 GLN 81 86 86 GLN GLN B . n B 1 82 GLY 82 87 87 GLY GLY B . n B 1 83 GLN 83 88 88 GLN GLN B . n B 1 84 GLN 84 89 89 GLN GLN B . n B 1 85 GLN 85 90 90 GLN GLN B . n B 1 86 ASN 86 91 91 ASN ASN B . n B 1 87 MET 87 92 92 MET MET B . n B 1 88 GLU 88 93 93 GLU GLU B . n B 1 89 SER 89 94 94 SER SER B . n B 1 90 SER 90 95 95 SER SER B . n B 1 91 GLY 91 96 96 GLY GLY B . n B 1 92 SER 92 97 97 SER SER B . n B 1 93 GLN 93 98 98 GLN GLN B . n B 1 94 GLY 94 99 99 GLY GLY B . n B 1 95 GLY 95 100 100 GLY GLY B . n C 1 1 SER 1 6 6 SER SER C . n C 1 2 TYR 2 7 7 TYR TYR C . n C 1 3 GLY 3 8 8 GLY GLY C . n C 1 4 GLN 4 9 9 GLN GLN C . n C 1 5 SER 5 10 10 SER SER C . n C 1 6 GLY 6 11 11 GLY GLY C . n C 1 7 GLY 7 12 12 GLY GLY C . n C 1 8 GLU 8 13 13 GLU GLU C . n C 1 9 GLN 9 14 14 GLN GLN C . n C 1 10 GLN 10 15 15 GLN GLN C . n C 1 11 SER 11 16 16 SER SER C . n C 1 12 TYR 12 17 17 TYR TYR C . n C 1 13 SER 13 18 18 SER SER C . n C 1 14 THR 14 19 19 THR THR C . n C 1 15 TYR 15 20 20 TYR TYR C . n C 1 16 GLY 16 21 21 GLY GLY C . n C 1 17 ASN 17 22 22 ASN ASN C . n C 1 18 PRO 18 23 23 PRO PRO C . n C 1 19 GLY 19 24 24 GLY GLY C . n C 1 20 SER 20 25 25 SER SER C . n C 1 21 GLN 21 26 26 GLN GLN C . n C 1 22 GLY 22 27 27 GLY GLY C . n C 1 23 TYR 23 28 28 TYR TYR C . n C 1 24 GLY 24 29 29 GLY GLY C . n C 1 25 GLN 25 30 30 GLN GLN C . n C 1 26 ALA 26 31 31 ALA ALA C . n C 1 27 SER 27 32 32 SER SER C . n C 1 28 GLN 28 33 33 GLN GLN C . n C 1 29 SER 29 34 34 SER SER C . n C 1 30 TYR 30 35 35 TYR TYR C . n C 1 31 SER 31 36 36 SER SER C . n C 1 32 GLY 32 37 37 GLY GLY C . n C 1 33 TYR 33 38 38 TYR TYR C . n C 1 34 GLY 34 39 39 GLY GLY C . n C 1 35 GLN 35 40 40 GLN GLN C . n C 1 36 THR 36 41 41 THR THR C . n C 1 37 THR 37 42 42 THR THR C . n C 1 38 ASP 38 43 43 ASP ASP C . n C 1 39 SER 39 44 44 SER SER C . n C 1 40 SER 40 45 45 SER SER C . n C 1 41 TYR 41 46 46 TYR TYR C . n C 1 42 GLY 42 47 47 GLY GLY C . n C 1 43 GLN 43 48 48 GLN GLN C . n C 1 44 ASN 44 49 49 ASN ASN C . n C 1 45 TYR 45 50 50 TYR TYR C . n C 1 46 SER 46 51 51 SER SER C . n C 1 47 GLY 47 52 52 GLY GLY C . n C 1 48 TYR 48 53 53 TYR TYR C . n C 1 49 SER 49 54 54 SER SER C . n C 1 50 SER 50 55 55 SER SER C . n C 1 51 TYR 51 56 56 TYR TYR C . n C 1 52 GLY 52 57 57 GLY GLY C . n C 1 53 GLN 53 58 58 GLN GLN C . n C 1 54 SER 54 59 59 SER SER C . n C 1 55 GLN 55 60 60 GLN GLN C . n C 1 56 SER 56 61 61 SER SER C . n C 1 57 GLY 57 62 62 GLY GLY C . n C 1 58 TYR 58 63 63 TYR TYR C . n C 1 59 SER 59 64 64 SER SER C . n C 1 60 GLN 60 65 65 GLN GLN C . n C 1 61 SER 61 66 66 SER SER C . n C 1 62 TYR 62 67 67 TYR TYR C . n C 1 63 GLY 63 68 68 GLY GLY C . n C 1 64 GLY 64 69 69 GLY GLY C . n C 1 65 TYR 65 70 70 TYR TYR C . n C 1 66 GLU 66 71 71 GLU GLU C . n C 1 67 ASN 67 72 72 ASN ASN C . n C 1 68 GLN 68 73 73 GLN GLN C . n C 1 69 LYS 69 74 74 LYS LYS C . n C 1 70 GLN 70 75 75 GLN GLN C . n C 1 71 SER 71 76 76 SER SER C . n C 1 72 SER 72 77 77 SER SER C . n C 1 73 TYR 73 78 78 TYR TYR C . n C 1 74 SER 74 79 79 SER SER C . n C 1 75 GLN 75 80 80 GLN GLN C . n C 1 76 GLN 76 81 81 GLN GLN C . n C 1 77 PRO 77 82 82 PRO PRO C . n C 1 78 TYR 78 83 83 TYR TYR C . n C 1 79 ASN 79 84 84 ASN ASN C . n C 1 80 ASN 80 85 85 ASN ASN C . n C 1 81 GLN 81 86 86 GLN GLN C . n C 1 82 GLY 82 87 87 GLY GLY C . n C 1 83 GLN 83 88 88 GLN GLN C . n C 1 84 GLN 84 89 89 GLN GLN C . n C 1 85 GLN 85 90 90 GLN GLN C . n C 1 86 ASN 86 91 91 ASN ASN C . n C 1 87 MET 87 92 92 MET MET C . n C 1 88 GLU 88 93 93 GLU GLU C . n C 1 89 SER 89 94 94 SER SER C . n C 1 90 SER 90 95 95 SER SER C . n C 1 91 GLY 91 96 96 GLY GLY C . n C 1 92 SER 92 97 97 SER SER C . n C 1 93 GLN 93 98 98 GLN GLN C . n C 1 94 GLY 94 99 99 GLY GLY C . n C 1 95 GLY 95 100 100 GLY GLY C . n D 1 1 SER 1 6 6 SER SER D . n D 1 2 TYR 2 7 7 TYR TYR D . n D 1 3 GLY 3 8 8 GLY GLY D . n D 1 4 GLN 4 9 9 GLN GLN D . n D 1 5 SER 5 10 10 SER SER D . n D 1 6 GLY 6 11 11 GLY GLY D . n D 1 7 GLY 7 12 12 GLY GLY D . n D 1 8 GLU 8 13 13 GLU GLU D . n D 1 9 GLN 9 14 14 GLN GLN D . n D 1 10 GLN 10 15 15 GLN GLN D . n D 1 11 SER 11 16 16 SER SER D . n D 1 12 TYR 12 17 17 TYR TYR D . n D 1 13 SER 13 18 18 SER SER D . n D 1 14 THR 14 19 19 THR THR D . n D 1 15 TYR 15 20 20 TYR TYR D . n D 1 16 GLY 16 21 21 GLY GLY D . n D 1 17 ASN 17 22 22 ASN ASN D . n D 1 18 PRO 18 23 23 PRO PRO D . n D 1 19 GLY 19 24 24 GLY GLY D . n D 1 20 SER 20 25 25 SER SER D . n D 1 21 GLN 21 26 26 GLN GLN D . n D 1 22 GLY 22 27 27 GLY GLY D . n D 1 23 TYR 23 28 28 TYR TYR D . n D 1 24 GLY 24 29 29 GLY GLY D . n D 1 25 GLN 25 30 30 GLN GLN D . n D 1 26 ALA 26 31 31 ALA ALA D . n D 1 27 SER 27 32 32 SER SER D . n D 1 28 GLN 28 33 33 GLN GLN D . n D 1 29 SER 29 34 34 SER SER D . n D 1 30 TYR 30 35 35 TYR TYR D . n D 1 31 SER 31 36 36 SER SER D . n D 1 32 GLY 32 37 37 GLY GLY D . n D 1 33 TYR 33 38 38 TYR TYR D . n D 1 34 GLY 34 39 39 GLY GLY D . n D 1 35 GLN 35 40 40 GLN GLN D . n D 1 36 THR 36 41 41 THR THR D . n D 1 37 THR 37 42 42 THR THR D . n D 1 38 ASP 38 43 43 ASP ASP D . n D 1 39 SER 39 44 44 SER SER D . n D 1 40 SER 40 45 45 SER SER D . n D 1 41 TYR 41 46 46 TYR TYR D . n D 1 42 GLY 42 47 47 GLY GLY D . n D 1 43 GLN 43 48 48 GLN GLN D . n D 1 44 ASN 44 49 49 ASN ASN D . n D 1 45 TYR 45 50 50 TYR TYR D . n D 1 46 SER 46 51 51 SER SER D . n D 1 47 GLY 47 52 52 GLY GLY D . n D 1 48 TYR 48 53 53 TYR TYR D . n D 1 49 SER 49 54 54 SER SER D . n D 1 50 SER 50 55 55 SER SER D . n D 1 51 TYR 51 56 56 TYR TYR D . n D 1 52 GLY 52 57 57 GLY GLY D . n D 1 53 GLN 53 58 58 GLN GLN D . n D 1 54 SER 54 59 59 SER SER D . n D 1 55 GLN 55 60 60 GLN GLN D . n D 1 56 SER 56 61 61 SER SER D . n D 1 57 GLY 57 62 62 GLY GLY D . n D 1 58 TYR 58 63 63 TYR TYR D . n D 1 59 SER 59 64 64 SER SER D . n D 1 60 GLN 60 65 65 GLN GLN D . n D 1 61 SER 61 66 66 SER SER D . n D 1 62 TYR 62 67 67 TYR TYR D . n D 1 63 GLY 63 68 68 GLY GLY D . n D 1 64 GLY 64 69 69 GLY GLY D . n D 1 65 TYR 65 70 70 TYR TYR D . n D 1 66 GLU 66 71 71 GLU GLU D . n D 1 67 ASN 67 72 72 ASN ASN D . n D 1 68 GLN 68 73 73 GLN GLN D . n D 1 69 LYS 69 74 74 LYS LYS D . n D 1 70 GLN 70 75 75 GLN GLN D . n D 1 71 SER 71 76 76 SER SER D . n D 1 72 SER 72 77 77 SER SER D . n D 1 73 TYR 73 78 78 TYR TYR D . n D 1 74 SER 74 79 79 SER SER D . n D 1 75 GLN 75 80 80 GLN GLN D . n D 1 76 GLN 76 81 81 GLN GLN D . n D 1 77 PRO 77 82 82 PRO PRO D . n D 1 78 TYR 78 83 83 TYR TYR D . n D 1 79 ASN 79 84 84 ASN ASN D . n D 1 80 ASN 80 85 85 ASN ASN D . n D 1 81 GLN 81 86 86 GLN GLN D . n D 1 82 GLY 82 87 87 GLY GLY D . n D 1 83 GLN 83 88 88 GLN GLN D . n D 1 84 GLN 84 89 89 GLN GLN D . n D 1 85 GLN 85 90 90 GLN GLN D . n D 1 86 ASN 86 91 91 ASN ASN D . n D 1 87 MET 87 92 92 MET MET D . n D 1 88 GLU 88 93 93 GLU GLU D . n D 1 89 SER 89 94 94 SER SER D . n D 1 90 SER 90 95 95 SER SER D . n D 1 91 GLY 91 96 96 GLY GLY D . n D 1 92 SER 92 97 97 SER SER D . n D 1 93 GLN 93 98 98 GLN GLN D . n D 1 94 GLY 94 99 99 GLY GLY D . n D 1 95 GLY 95 100 100 GLY GLY D . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9TKZ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9TKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9TKZ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9TKZ _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.59 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 5110 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.488 ? 6867 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 4.394 ? 763 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.033 ? 553 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 987 ? f_plane_restr ? ? ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? 0.838267 -0.545260 0.000000 0 0 0 0 0 0 64.79443 0 0 2 given ? 0.857372 -0.514698 0.000000 0 0 0 0 0 0 60.24261 0 0 3 given ? 0.875362 -0.483467 0.000000 0 0 0 0 0 0 55.73159 0 0 4 given ? 0.892216 -0.451609 0.000000 0 0 0 0 0 0 51.26723 0 0 5 given ? 0.907911 -0.419164 0.000000 0 0 0 0 0 0 46.85532 0 0 6 given ? 0.922426 -0.386174 0.000000 0 0 0 0 0 0 42.50160 0 0 7 given ? 0.935743 -0.352683 0.000000 0 0 0 0 0 0 38.21172 0 0 8 given ? 0.947844 -0.318734 0.000000 0 0 0 0 0 0 33.99125 0 0 9 given ? 0.958715 -0.284370 0.000000 0 0 0 0 0 0 29.84568 0 0 10 given ? 0.968339 -0.249637 0.000000 0 0 0 0 0 0 25.78039 0 0 11 given ? 0.976706 -0.214580 0.000000 0 0 0 0 0 0 21.80066 0 0 12 given ? 0.983805 -0.179244 0.000000 0 0 0 0 0 0 17.91167 0 0 13 given ? 0.989625 -0.143676 0.000000 0 0 0 0 0 0 14.11846 0 0 14 given ? 0.994160 -0.107920 0.000000 0 0 0 0 0 0 10.42596 0 0 15 given ? 0.997403 -0.072025 0.000000 0 0 0 0 0 0 6.83896 0 0 16 given ? 0.999350 -0.036036 0.000000 0 0 0 0 0 0 3.36214 0 0 18 given ? 0.999350 0.036036 0.000000 0 0 0 0 0 0 -3.24309 0 0 19 given ? 0.997403 0.072025 0.000000 0 0 0 0 0 0 -6.36291 0 0 20 given ? 0.994160 0.107920 0.000000 0 0 0 0 0 0 -9.35542 0 0 21 given ? 0.989625 0.143676 0.000000 0 0 0 0 0 0 -12.21673 0 0 22 given ? 0.983805 0.179244 0.000000 0 0 0 0 0 0 -14.94311 0 0 23 given ? 0.976706 0.214580 0.000000 0 0 0 0 0 0 -17.53103 0 0 24 given ? 0.968339 0.249637 0.000000 0 0 0 0 0 0 -19.97713 0 0 25 given ? 0.958715 0.284370 0.000000 0 0 0 0 0 0 -22.27823 0 0 26 given ? 0.947844 0.318734 0.000000 0 0 0 0 0 0 -24.43133 0 0 27 given ? 0.935743 0.352683 0.000000 0 0 0 0 0 0 -26.43365 0 0 28 given ? 0.922426 0.386174 0.000000 0 0 0 0 0 0 -28.28258 0 0 29 given ? 0.907911 0.419164 0.000000 0 0 0 0 0 0 -29.97571 0 0 30 given ? 0.892216 0.451609 0.000000 0 0 0 0 0 0 -31.51086 0 0 31 given ? 0.875362 0.483467 0.000000 0 0 0 0 0 0 -32.88603 0 0 32 given ? 0.857372 0.514698 0.000000 0 0 0 0 0 0 -34.09942 0 0 33 given ? 0.838267 0.545260 0.000000 -0.545260 0.838267 0.000000 0.000000 0.000000 1.000000 -35.14947 64.79443 76.91919 # _struct.entry_id 9TKZ _struct.title 'TAF15 amyloid filament fold D prime' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9TKZ _struct_keywords.text 'Amyloid Neurodegeneration Frontotemporal lobar degeneration, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RBP56_HUMAN _struct_ref.pdbx_db_accession Q92804 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SYGQSGGEQQSYSTYGNPGSQGYGQASQSYSGYGQTTDSSYGQNYSGYSSYGQSQSGYSQSYGGYENQKQSSYSQQPYNN QGQQQNMESSGSQGG ; _struct_ref.pdbx_align_begin 6 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9TKZ A 1 ? 95 ? Q92804 6 ? 100 ? 6 100 2 1 9TKZ B 1 ? 95 ? Q92804 6 ? 100 ? 6 100 3 1 9TKZ C 1 ? 95 ? Q92804 6 ? 100 ? 6 100 4 1 9TKZ D 1 ? 95 ? Q92804 6 ? 100 ? 6 100 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLN 76 A . ? GLN 81 A PRO 77 A ? PRO 82 A 1 -4.09 2 GLN 76 B . ? GLN 81 B PRO 77 B ? PRO 82 B 1 -4.06 3 GLN 76 C . ? GLN 81 C PRO 77 C ? PRO 82 C 1 -4.12 4 GLN 76 D . ? GLN 81 D PRO 77 D ? PRO 82 D 1 -4.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? AA4 ? 4 ? AA5 ? 4 ? AA6 ? 4 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 4 ? AB1 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA2 3 4 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA3 3 4 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA4 3 4 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA5 3 4 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA6 3 4 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA7 3 4 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel AA8 3 4 ? parallel AA9 1 2 ? parallel AA9 2 3 ? parallel AA9 3 4 ? parallel AB1 1 2 ? parallel AB1 2 3 ? parallel AB1 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLU B 8 ? GLN B 9 ? GLU B 13 GLN B 14 AA1 2 GLU A 8 ? GLN A 9 ? GLU A 13 GLN A 14 AA1 3 GLU C 8 ? GLN C 9 ? GLU C 13 GLN C 14 AA1 4 GLU D 8 ? GLN D 9 ? GLU D 13 GLN D 14 AA2 1 TYR B 15 ? GLY B 16 ? TYR B 20 GLY B 21 AA2 2 TYR A 15 ? GLY A 16 ? TYR A 20 GLY A 21 AA2 3 TYR C 15 ? GLY C 16 ? TYR C 20 GLY C 21 AA2 4 TYR D 15 ? GLY D 16 ? TYR D 20 GLY D 21 AA3 1 SER B 20 ? GLN B 21 ? SER B 25 GLN B 26 AA3 2 SER A 20 ? GLN A 21 ? SER A 25 GLN A 26 AA3 3 SER C 20 ? GLN C 21 ? SER C 25 GLN C 26 AA3 4 SER D 20 ? GLN D 21 ? SER D 25 GLN D 26 AA4 1 ALA B 26 ? TYR B 30 ? ALA B 31 TYR B 35 AA4 2 ALA A 26 ? TYR A 30 ? ALA A 31 TYR A 35 AA4 3 ALA C 26 ? TYR C 30 ? ALA C 31 TYR C 35 AA4 4 ALA D 26 ? TYR D 30 ? ALA D 31 TYR D 35 AA5 1 TYR B 41 ? ASN B 44 ? TYR B 46 ASN B 49 AA5 2 TYR A 41 ? ASN A 44 ? TYR A 46 ASN A 49 AA5 3 TYR C 41 ? ASN C 44 ? TYR C 46 ASN C 49 AA5 4 TYR D 41 ? ASN D 44 ? TYR D 46 ASN D 49 AA6 1 GLN B 53 ? SER B 56 ? GLN B 58 SER B 61 AA6 2 GLN A 53 ? SER A 56 ? GLN A 58 SER A 61 AA6 3 GLN C 53 ? SER C 56 ? GLN C 58 SER C 61 AA6 4 GLN D 53 ? SER D 56 ? GLN D 58 SER D 61 AA7 1 SER B 59 ? TYR B 62 ? SER B 64 TYR B 67 AA7 2 SER A 59 ? TYR A 62 ? SER A 64 TYR A 67 AA7 3 SER C 59 ? TYR C 62 ? SER C 64 TYR C 67 AA7 4 SER D 59 ? TYR D 62 ? SER D 64 TYR D 67 AA8 1 SER B 72 ? SER B 74 ? SER B 77 SER B 79 AA8 2 SER A 72 ? SER A 74 ? SER A 77 SER A 79 AA8 3 SER C 72 ? SER C 74 ? SER C 77 SER C 79 AA8 4 SER D 72 ? SER D 74 ? SER D 77 SER D 79 AA9 1 TYR B 78 ? GLN B 81 ? TYR B 83 GLN B 86 AA9 2 TYR A 78 ? GLN A 81 ? TYR A 83 GLN A 86 AA9 3 TYR C 78 ? GLN C 81 ? TYR C 83 GLN C 86 AA9 4 TYR D 78 ? GLN D 81 ? TYR D 83 GLN D 86 AB1 1 GLN B 84 ? SER B 89 ? GLN B 89 SER B 94 AB1 2 GLN A 84 ? SER A 89 ? GLN A 89 SER A 94 AB1 3 GLN C 84 ? SER C 89 ? GLN C 89 SER C 94 AB1 4 GLN D 84 ? SER D 89 ? GLN D 89 SER D 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLU B 8 ? O GLU B 13 N GLN A 9 ? N GLN A 14 AA1 2 3 N GLU A 8 ? N GLU A 13 O GLN C 9 ? O GLN C 14 AA1 3 4 N GLU C 8 ? N GLU C 13 O GLN D 9 ? O GLN D 14 AA2 1 2 O GLY B 16 ? O GLY B 21 N TYR A 15 ? N TYR A 20 AA2 2 3 N GLY A 16 ? N GLY A 21 O TYR C 15 ? O TYR C 20 AA2 3 4 N GLY C 16 ? N GLY C 21 O TYR D 15 ? O TYR D 20 AA3 1 2 O SER B 20 ? O SER B 25 N GLN A 21 ? N GLN A 26 AA3 2 3 N SER A 20 ? N SER A 25 O GLN C 21 ? O GLN C 26 AA3 3 4 N SER C 20 ? N SER C 25 O GLN D 21 ? O GLN D 26 AA4 1 2 O GLN B 28 ? O GLN B 33 N SER A 29 ? N SER A 34 AA4 2 3 N GLN A 28 ? N GLN A 33 O SER C 29 ? O SER C 34 AA4 3 4 N GLN C 28 ? N GLN C 33 O SER D 29 ? O SER D 34 AA5 1 2 O ASN B 44 ? O ASN B 49 N GLN A 43 ? N GLN A 48 AA5 2 3 N ASN A 44 ? N ASN A 49 O GLN C 43 ? O GLN C 48 AA5 3 4 N ASN C 44 ? N ASN C 49 O GLN D 43 ? O GLN D 48 AA6 1 2 O GLN B 53 ? O GLN B 58 N SER A 54 ? N SER A 59 AA6 2 3 N GLN A 53 ? N GLN A 58 O SER C 54 ? O SER C 59 AA6 3 4 N GLN C 53 ? N GLN C 58 O SER D 54 ? O SER D 59 AA7 1 2 O SER B 61 ? O SER B 66 N TYR A 62 ? N TYR A 67 AA7 2 3 N SER A 61 ? N SER A 66 O TYR C 62 ? O TYR C 67 AA7 3 4 N SER C 61 ? N SER C 66 O TYR D 62 ? O TYR D 67 AA8 1 2 O TYR B 73 ? O TYR B 78 N SER A 72 ? N SER A 77 AA8 2 3 N TYR A 73 ? N TYR A 78 O SER C 72 ? O SER C 77 AA8 3 4 N TYR C 73 ? N TYR C 78 O SER D 72 ? O SER D 77 AA9 1 2 O TYR B 78 ? O TYR B 83 N ASN A 79 ? N ASN A 84 AA9 2 3 N TYR A 78 ? N TYR A 83 O ASN C 79 ? O ASN C 84 AA9 3 4 N TYR C 78 ? N TYR C 83 O ASN D 79 ? O ASN D 84 AB1 1 2 O GLN B 85 ? O GLN B 90 N ASN A 86 ? N ASN A 91 AB1 2 3 N GLN A 85 ? N GLN A 90 O ASN C 86 ? O ASN C 91 AB1 3 4 N GLN C 85 ? N GLN C 90 O ASN D 86 ? O ASN D 91 # _pdbx_entry_details.entry_id 9TKZ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 23 ? ? -82.11 46.15 2 1 GLN A 73 ? ? -119.67 70.35 3 1 GLN A 75 ? ? 28.96 62.97 4 1 PRO B 23 ? ? -82.11 46.16 5 1 GLN B 73 ? ? -119.69 70.39 6 1 GLN B 75 ? ? 28.92 62.97 7 1 PRO C 23 ? ? -82.08 46.12 8 1 GLN C 73 ? ? -119.67 70.35 9 1 GLN C 75 ? ? 28.94 62.99 10 1 PRO D 23 ? ? -82.11 46.15 11 1 GLN D 73 ? ? -119.69 70.37 12 1 GLN D 75 ? ? 29.01 62.95 # _space_group_symop.id 1 _space_group_symop.operation_xyz x,y,z # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9TKZ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9TKZ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.59 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 10168 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'TATA-binding protein-associated factor 2N' _em_entity_assembly.details ;TAF15 amyloid filament fold D' ; _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9TKZ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material GOLD _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 9TKZ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9TKZ _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ASN N N N N 14 ASN CA C N S 15 ASN C C N N 16 ASN O O N N 17 ASN CB C N N 18 ASN CG C N N 19 ASN OD1 O N N 20 ASN ND2 N N N 21 ASN OXT O N N 22 ASN H H N N 23 ASN H2 H N N 24 ASN HA H N N 25 ASN HB2 H N N 26 ASN HB3 H N N 27 ASN HD21 H N N 28 ASN HD22 H N N 29 ASN HXT H N N 30 ASP N N N N 31 ASP CA C N S 32 ASP C C N N 33 ASP O O N N 34 ASP CB C N N 35 ASP CG C N N 36 ASP OD1 O N N 37 ASP OD2 O N N 38 ASP OXT O N N 39 ASP H H N N 40 ASP H2 H N N 41 ASP HA H N N 42 ASP HB2 H N N 43 ASP HB3 H N N 44 ASP HD2 H N N 45 ASP HXT H N N 46 GLN N N N N 47 GLN CA C N S 48 GLN C C N N 49 GLN O O N N 50 GLN CB C N N 51 GLN CG C N N 52 GLN CD C N N 53 GLN OE1 O N N 54 GLN NE2 N N N 55 GLN OXT O N N 56 GLN H H N N 57 GLN H2 H N N 58 GLN HA H N N 59 GLN HB2 H N N 60 GLN HB3 H N N 61 GLN HG2 H N N 62 GLN HG3 H N N 63 GLN HE21 H N N 64 GLN HE22 H N N 65 GLN HXT H N N 66 GLU N N N N 67 GLU CA C N S 68 GLU C C N N 69 GLU O O N N 70 GLU CB C N N 71 GLU CG C N N 72 GLU CD C N N 73 GLU OE1 O N N 74 GLU OE2 O N N 75 GLU OXT O N N 76 GLU H H N N 77 GLU H2 H N N 78 GLU HA H N N 79 GLU HB2 H N N 80 GLU HB3 H N N 81 GLU HG2 H N N 82 GLU HG3 H N N 83 GLU HE2 H N N 84 GLU HXT H N N 85 GLY N N N N 86 GLY CA C N N 87 GLY C C N N 88 GLY O O N N 89 GLY OXT O N N 90 GLY H H N N 91 GLY H2 H N N 92 GLY HA2 H N N 93 GLY HA3 H N N 94 GLY HXT H N N 95 LYS N N N N 96 LYS CA C N S 97 LYS C C N N 98 LYS O O N N 99 LYS CB C N N 100 LYS CG C N N 101 LYS CD C N N 102 LYS CE C N N 103 LYS NZ N N N 104 LYS OXT O N N 105 LYS H H N N 106 LYS H2 H N N 107 LYS HA H N N 108 LYS HB2 H N N 109 LYS HB3 H N N 110 LYS HG2 H N N 111 LYS HG3 H N N 112 LYS HD2 H N N 113 LYS HD3 H N N 114 LYS HE2 H N N 115 LYS HE3 H N N 116 LYS HZ1 H N N 117 LYS HZ2 H N N 118 LYS HZ3 H N N 119 LYS HXT H N N 120 MET N N N N 121 MET CA C N S 122 MET C C N N 123 MET O O N N 124 MET CB C N N 125 MET CG C N N 126 MET SD S N N 127 MET CE C N N 128 MET OXT O N N 129 MET H H N N 130 MET H2 H N N 131 MET HA H N N 132 MET HB2 H N N 133 MET HB3 H N N 134 MET HG2 H N N 135 MET HG3 H N N 136 MET HE1 H N N 137 MET HE2 H N N 138 MET HE3 H N N 139 MET HXT H N N 140 PRO N N N N 141 PRO CA C N S 142 PRO C C N N 143 PRO O O N N 144 PRO CB C N N 145 PRO CG C N N 146 PRO CD C N N 147 PRO OXT O N N 148 PRO H H N N 149 PRO HA H N N 150 PRO HB2 H N N 151 PRO HB3 H N N 152 PRO HG2 H N N 153 PRO HG3 H N N 154 PRO HD2 H N N 155 PRO HD3 H N N 156 PRO HXT H N N 157 SER N N N N 158 SER CA C N S 159 SER C C N N 160 SER O O N N 161 SER CB C N N 162 SER OG O N N 163 SER OXT O N N 164 SER H H N N 165 SER H2 H N N 166 SER HA H N N 167 SER HB2 H N N 168 SER HB3 H N N 169 SER HG H N N 170 SER HXT H N N 171 THR N N N N 172 THR CA C N S 173 THR C C N N 174 THR O O N N 175 THR CB C N R 176 THR OG1 O N N 177 THR CG2 C N N 178 THR OXT O N N 179 THR H H N N 180 THR H2 H N N 181 THR HA H N N 182 THR HB H N N 183 THR HG1 H N N 184 THR HG21 H N N 185 THR HG22 H N N 186 THR HG23 H N N 187 THR HXT H N N 188 TYR N N N N 189 TYR CA C N S 190 TYR C C N N 191 TYR O O N N 192 TYR CB C N N 193 TYR CG C Y N 194 TYR CD1 C Y N 195 TYR CD2 C Y N 196 TYR CE1 C Y N 197 TYR CE2 C Y N 198 TYR CZ C Y N 199 TYR OH O N N 200 TYR OXT O N N 201 TYR H H N N 202 TYR H2 H N N 203 TYR HA H N N 204 TYR HB2 H N N 205 TYR HB3 H N N 206 TYR HD1 H N N 207 TYR HD2 H N N 208 TYR HE1 H N N 209 TYR HE2 H N N 210 TYR HH H N N 211 TYR HXT H N N 212 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ASN N CA sing N N 13 ASN N H sing N N 14 ASN N H2 sing N N 15 ASN CA C sing N N 16 ASN CA CB sing N N 17 ASN CA HA sing N N 18 ASN C O doub N N 19 ASN C OXT sing N N 20 ASN CB CG sing N N 21 ASN CB HB2 sing N N 22 ASN CB HB3 sing N N 23 ASN CG OD1 doub N N 24 ASN CG ND2 sing N N 25 ASN ND2 HD21 sing N N 26 ASN ND2 HD22 sing N N 27 ASN OXT HXT sing N N 28 ASP N CA sing N N 29 ASP N H sing N N 30 ASP N H2 sing N N 31 ASP CA C sing N N 32 ASP CA CB sing N N 33 ASP CA HA sing N N 34 ASP C O doub N N 35 ASP C OXT sing N N 36 ASP CB CG sing N N 37 ASP CB HB2 sing N N 38 ASP CB HB3 sing N N 39 ASP CG OD1 doub N N 40 ASP CG OD2 sing N N 41 ASP OD2 HD2 sing N N 42 ASP OXT HXT sing N N 43 GLN N CA sing N N 44 GLN N H sing N N 45 GLN N H2 sing N N 46 GLN CA C sing N N 47 GLN CA CB sing N N 48 GLN CA HA sing N N 49 GLN C O doub N N 50 GLN C OXT sing N N 51 GLN CB CG sing N N 52 GLN CB HB2 sing N N 53 GLN CB HB3 sing N N 54 GLN CG CD sing N N 55 GLN CG HG2 sing N N 56 GLN CG HG3 sing N N 57 GLN CD OE1 doub N N 58 GLN CD NE2 sing N N 59 GLN NE2 HE21 sing N N 60 GLN NE2 HE22 sing N N 61 GLN OXT HXT sing N N 62 GLU N CA sing N N 63 GLU N H sing N N 64 GLU N H2 sing N N 65 GLU CA C sing N N 66 GLU CA CB sing N N 67 GLU CA HA sing N N 68 GLU C O doub N N 69 GLU C OXT sing N N 70 GLU CB CG sing N N 71 GLU CB HB2 sing N N 72 GLU CB HB3 sing N N 73 GLU CG CD sing N N 74 GLU CG HG2 sing N N 75 GLU CG HG3 sing N N 76 GLU CD OE1 doub N N 77 GLU CD OE2 sing N N 78 GLU OE2 HE2 sing N N 79 GLU OXT HXT sing N N 80 GLY N CA sing N N 81 GLY N H sing N N 82 GLY N H2 sing N N 83 GLY CA C sing N N 84 GLY CA HA2 sing N N 85 GLY CA HA3 sing N N 86 GLY C O doub N N 87 GLY C OXT sing N N 88 GLY OXT HXT sing N N 89 LYS N CA sing N N 90 LYS N H sing N N 91 LYS N H2 sing N N 92 LYS CA C sing N N 93 LYS CA CB sing N N 94 LYS CA HA sing N N 95 LYS C O doub N N 96 LYS C OXT sing N N 97 LYS CB CG sing N N 98 LYS CB HB2 sing N N 99 LYS CB HB3 sing N N 100 LYS CG CD sing N N 101 LYS CG HG2 sing N N 102 LYS CG HG3 sing N N 103 LYS CD CE sing N N 104 LYS CD HD2 sing N N 105 LYS CD HD3 sing N N 106 LYS CE NZ sing N N 107 LYS CE HE2 sing N N 108 LYS CE HE3 sing N N 109 LYS NZ HZ1 sing N N 110 LYS NZ HZ2 sing N N 111 LYS NZ HZ3 sing N N 112 LYS OXT HXT sing N N 113 MET N CA sing N N 114 MET N H sing N N 115 MET N H2 sing N N 116 MET CA C sing N N 117 MET CA CB sing N N 118 MET CA HA sing N N 119 MET C O doub N N 120 MET C OXT sing N N 121 MET CB CG sing N N 122 MET CB HB2 sing N N 123 MET CB HB3 sing N N 124 MET CG SD sing N N 125 MET CG HG2 sing N N 126 MET CG HG3 sing N N 127 MET SD CE sing N N 128 MET CE HE1 sing N N 129 MET CE HE2 sing N N 130 MET CE HE3 sing N N 131 MET OXT HXT sing N N 132 PRO N CA sing N N 133 PRO N CD sing N N 134 PRO N H sing N N 135 PRO CA C sing N N 136 PRO CA CB sing N N 137 PRO CA HA sing N N 138 PRO C O doub N N 139 PRO C OXT sing N N 140 PRO CB CG sing N N 141 PRO CB HB2 sing N N 142 PRO CB HB3 sing N N 143 PRO CG CD sing N N 144 PRO CG HG2 sing N N 145 PRO CG HG3 sing N N 146 PRO CD HD2 sing N N 147 PRO CD HD3 sing N N 148 PRO OXT HXT sing N N 149 SER N CA sing N N 150 SER N H sing N N 151 SER N H2 sing N N 152 SER CA C sing N N 153 SER CA CB sing N N 154 SER CA HA sing N N 155 SER C O doub N N 156 SER C OXT sing N N 157 SER CB OG sing N N 158 SER CB HB2 sing N N 159 SER CB HB3 sing N N 160 SER OG HG sing N N 161 SER OXT HXT sing N N 162 THR N CA sing N N 163 THR N H sing N N 164 THR N H2 sing N N 165 THR CA C sing N N 166 THR CA CB sing N N 167 THR CA HA sing N N 168 THR C O doub N N 169 THR C OXT sing N N 170 THR CB OG1 sing N N 171 THR CB CG2 sing N N 172 THR CB HB sing N N 173 THR OG1 HG1 sing N N 174 THR CG2 HG21 sing N N 175 THR CG2 HG22 sing N N 176 THR CG2 HG23 sing N N 177 THR OXT HXT sing N N 178 TYR N CA sing N N 179 TYR N H sing N N 180 TYR N H2 sing N N 181 TYR CA C sing N N 182 TYR CA CB sing N N 183 TYR CA HA sing N N 184 TYR C O doub N N 185 TYR C OXT sing N N 186 TYR CB CG sing N N 187 TYR CB HB2 sing N N 188 TYR CB HB3 sing N N 189 TYR CG CD1 doub Y N 190 TYR CG CD2 sing Y N 191 TYR CD1 CE1 sing Y N 192 TYR CD1 HD1 sing N N 193 TYR CD2 CE2 doub Y N 194 TYR CD2 HD2 sing N N 195 TYR CE1 CZ doub Y N 196 TYR CE1 HE1 sing N N 197 TYR CE2 CZ sing Y N 198 TYR CE2 HE2 sing N N 199 TYR CZ OH sing N N 200 TYR OH HH sing N N 201 TYR OXT HXT sing N N 202 # _em_admin.current_status REL _em_admin.deposition_date 2025-12-10 _em_admin.deposition_site PDBE _em_admin.entry_id 9TKZ _em_admin.last_update 2026-02-18 _em_admin.map_release_date 2026-02-18 _em_admin.title 'TAF15 amyloid filament fold D prime' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ Brain _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue 'Prefrontal cortex' _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -2.07 _em_helical_entity.axial_rise_per_subunit 4.81 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 40 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 56489 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 10 _em_imaging_optics.energyfilter_name 'GIF Quantum ER' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1111556 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION 5.0.1 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 5.0.1 ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Medical Research Council (MRC, United Kingdom)' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number MC_UP_1201/25 _pdbx_audit_support.ordinal 1 # _space_group.crystal_system triclinic _space_group.name_H-M_alt 'P 1' _space_group.IT_number 1 _space_group.name_Hall 'P 1' _space_group.id 1 # _atom_sites.entry_id 9TKZ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #