HEADER DE NOVO PROTEIN 11-DEC-25 9TLV TITLE DE NOVO DESIGNED SINGLE-CHAIN ANTIPARALLEL COILED-COIL HAIRPIN WITH TITLE 2 BINDING SITE FOR MCL-1, SC-APCC-2-MCL-1-3 IN COMPLEX WITH MCL-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SC-APCC-2-MCL-1-3; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL- COMPND 7 1; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: MCL-1 FROM RESIDUE 172-327 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: MCL1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS PROTEIN BINDER, COMPUTATIONAL DESIGN, COILED-COIL, COMPLEX, DE NOVO KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.MYLEMANS,A.ACEVEDO-JAKE,A.J.WILSON,D.N.WOOLFSON REVDAT 1 19-AUG-26 9TLV 0 JRNL AUTH B.MYLEMANS,B.KORONA,A.M.ACEVEDO-JAKE,A.MACRAE,T.A.EDWARDS, JRNL AUTH 2 D.T.HUANG,A.J.WILSON,L.S.ITZHAKI,D.N.WOOLFSON JRNL TITL DE NOVO-DESIGNED BIFUNCTIONAL JRNL REF J.AM.CHEM.SOC. 2026 JRNL REFN ESSN 1520-5126 JRNL DOI 10.1021/JACS.6C07593 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21_5207 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 27658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.5200 - 5.3400 0.97 2634 132 0.2071 0.2201 REMARK 3 2 5.3300 - 4.2400 1.00 2744 104 0.1861 0.1874 REMARK 3 3 4.2400 - 3.7000 1.00 2671 180 0.1783 0.2365 REMARK 3 4 3.7000 - 3.3600 1.00 2721 138 0.1784 0.2320 REMARK 3 5 3.3600 - 3.1200 1.00 2761 104 0.2050 0.2771 REMARK 3 6 3.1200 - 2.9400 1.00 2704 149 0.2167 0.2791 REMARK 3 7 2.9400 - 2.7900 1.00 2725 116 0.2170 0.2264 REMARK 3 8 2.7900 - 2.6700 1.00 2744 118 0.2269 0.2779 REMARK 3 9 2.6700 - 2.5700 1.00 2714 141 0.2183 0.2878 REMARK 3 10 2.5700 - 2.4800 1.00 2746 116 0.2211 0.2211 REMARK 3 11 2.4800 - 2.4000 1.00 2665 154 0.2230 0.2599 REMARK 3 12 2.4000 - 2.3300 1.00 2706 155 0.2192 0.3201 REMARK 3 13 2.3300 - 2.2700 1.00 2708 148 0.2192 0.3048 REMARK 3 14 2.2700 - 2.2100 0.97 2664 138 0.2399 0.3325 REMARK 3 15 2.2100 - 2.1600 1.00 2695 154 0.2258 0.2820 REMARK 3 16 2.1600 - 2.1200 1.00 2718 123 0.2296 0.3062 REMARK 3 17 2.1200 - 2.0800 0.99 2636 145 0.2386 0.2607 REMARK 3 18 2.0800 - 2.0400 0.96 2639 122 0.2372 0.3039 REMARK 3 19 2.0400 - 2.0000 1.00 2696 157 0.2372 0.2673 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.201 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3342 REMARK 3 ANGLE : 1.130 4523 REMARK 3 CHIRALITY : 0.063 539 REMARK 3 PLANARITY : 0.013 582 REMARK 3 DIHEDRAL : 14.096 1207 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 38 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8839 10.8580 5.8848 REMARK 3 T TENSOR REMARK 3 T11: 0.1307 T22: 0.1749 REMARK 3 T33: 0.6284 T12: -0.1180 REMARK 3 T13: 0.0220 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 3.3986 L22: 6.4999 REMARK 3 L33: 2.3942 L12: -0.0194 REMARK 3 L13: 0.5764 L23: -0.2691 REMARK 3 S TENSOR REMARK 3 S11: -0.3929 S12: 0.1065 S13: 1.2031 REMARK 3 S21: 0.7133 S22: 0.0547 S23: -0.4511 REMARK 3 S31: 0.0091 S32: 0.2992 S33: 0.2317 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.2526 10.9786 2.2152 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.2255 REMARK 3 T33: 0.3414 T12: -0.0180 REMARK 3 T13: 0.0283 T23: 0.1329 REMARK 3 L TENSOR REMARK 3 L11: 2.7116 L22: 9.2432 REMARK 3 L33: 2.0291 L12: -0.2753 REMARK 3 L13: -0.6719 L23: -1.9796 REMARK 3 S TENSOR REMARK 3 S11: 0.0533 S12: 0.4710 S13: 0.9685 REMARK 3 S21: -0.2827 S22: -0.0423 S23: -0.1183 REMARK 3 S31: -0.0729 S32: -0.0554 S33: 0.0529 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2669 -8.5607 -5.2583 REMARK 3 T TENSOR REMARK 3 T11: 0.1975 T22: 0.3989 REMARK 3 T33: -0.0988 T12: -0.0094 REMARK 3 T13: -0.1806 T23: -0.4267 REMARK 3 L TENSOR REMARK 3 L11: 2.2493 L22: 2.8504 REMARK 3 L33: 2.2331 L12: -0.8962 REMARK 3 L13: -0.5081 L23: 0.4014 REMARK 3 S TENSOR REMARK 3 S11: 0.1521 S12: 0.8634 S13: -1.1275 REMARK 3 S21: -0.1893 S22: 0.3289 S23: 1.5147 REMARK 3 S31: 0.1328 S32: -0.5048 S33: 0.0146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7666 -2.5422 -10.7231 REMARK 3 T TENSOR REMARK 3 T11: 0.4413 T22: 0.6234 REMARK 3 T33: 0.2065 T12: 0.0728 REMARK 3 T13: -0.0149 T23: -0.0731 REMARK 3 L TENSOR REMARK 3 L11: 2.7617 L22: 1.9662 REMARK 3 L33: 2.1236 L12: -0.7474 REMARK 3 L13: 1.3782 L23: 1.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.2151 S12: 1.4071 S13: -0.3008 REMARK 3 S21: -0.6554 S22: -0.2968 S23: 0.1736 REMARK 3 S31: -0.1350 S32: -0.3766 S33: 0.1135 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 52 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3729 -8.5616 1.1643 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.2677 REMARK 3 T33: 0.4515 T12: 0.0549 REMARK 3 T13: 0.0043 T23: -0.0681 REMARK 3 L TENSOR REMARK 3 L11: 3.7203 L22: 4.2971 REMARK 3 L33: 5.7857 L12: 0.3603 REMARK 3 L13: 1.0768 L23: 1.1663 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.2565 S13: -1.1048 REMARK 3 S21: -0.3294 S22: 0.4131 S23: -0.4855 REMARK 3 S31: 0.6767 S32: 0.6664 S33: -0.4130 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1791 -5.7470 9.8148 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.1785 REMARK 3 T33: 0.2264 T12: -0.0451 REMARK 3 T13: 0.0305 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 3.9707 L22: 6.7792 REMARK 3 L33: 4.6435 L12: 0.2563 REMARK 3 L13: 0.4516 L23: 0.7755 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: 0.2955 S13: -0.6642 REMARK 3 S21: 0.0879 S22: 0.1366 S23: -0.4606 REMARK 3 S31: 0.6016 S32: -0.0854 S33: 0.0140 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1586 -7.8043 1.1241 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.1967 REMARK 3 T33: 0.1822 T12: -0.0139 REMARK 3 T13: -0.0151 T23: -0.0724 REMARK 3 L TENSOR REMARK 3 L11: 4.2546 L22: 3.6367 REMARK 3 L33: 2.1591 L12: -1.7133 REMARK 3 L13: -1.2811 L23: 1.6751 REMARK 3 S TENSOR REMARK 3 S11: -0.0451 S12: 0.4425 S13: -0.7203 REMARK 3 S21: -0.0572 S22: -0.0801 S23: 0.1638 REMARK 3 S31: 0.1582 S32: -0.1419 S33: 0.1282 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0875 6.1790 -2.8504 REMARK 3 T TENSOR REMARK 3 T11: 0.2397 T22: 0.4290 REMARK 3 T33: 0.1913 T12: 0.1611 REMARK 3 T13: -0.0302 T23: 0.1401 REMARK 3 L TENSOR REMARK 3 L11: 3.4661 L22: 4.2085 REMARK 3 L33: 7.0394 L12: 3.7756 REMARK 3 L13: -0.0318 L23: 0.1622 REMARK 3 S TENSOR REMARK 3 S11: 0.1892 S12: 0.8665 S13: 0.9484 REMARK 3 S21: -0.4287 S22: -0.4377 S23: 0.7473 REMARK 3 S31: -0.6559 S32: -1.2922 S33: 0.1469 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8197 14.6276 -32.5986 REMARK 3 T TENSOR REMARK 3 T11: 0.1305 T22: 0.2396 REMARK 3 T33: 0.3768 T12: 0.1276 REMARK 3 T13: 0.0291 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 3.9661 L22: 7.8816 REMARK 3 L33: 4.5599 L12: 6.2758 REMARK 3 L13: 3.6206 L23: 3.0873 REMARK 3 S TENSOR REMARK 3 S11: -0.1218 S12: -0.1434 S13: 0.1773 REMARK 3 S21: -0.3247 S22: -0.1007 S23: 0.2088 REMARK 3 S31: -0.3529 S32: -0.0674 S33: 0.1773 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 34 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0033 8.9264 -30.9741 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.1282 REMARK 3 T33: 0.1378 T12: 0.0317 REMARK 3 T13: 0.0207 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 1.9928 L22: 6.1045 REMARK 3 L33: 3.4319 L12: -0.7159 REMARK 3 L13: -0.5636 L23: 1.3824 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: -0.0542 S13: 0.3176 REMARK 3 S21: 0.2079 S22: -0.0424 S23: 0.3181 REMARK 3 S31: 0.0883 S32: -0.1266 S33: 0.0762 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 0 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9602 -7.3825 -22.7405 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.2327 REMARK 3 T33: 0.1789 T12: -0.0366 REMARK 3 T13: -0.0228 T23: 0.0724 REMARK 3 L TENSOR REMARK 3 L11: 3.0321 L22: 2.7171 REMARK 3 L33: 2.4760 L12: -0.3077 REMARK 3 L13: -0.7031 L23: -1.1775 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: -0.6970 S13: -0.4125 REMARK 3 S21: 0.3659 S22: -0.1298 S23: -0.1966 REMARK 3 S31: -0.0210 S32: 0.2212 S33: 0.1061 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 68 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.8584 -5.9529 -38.7992 REMARK 3 T TENSOR REMARK 3 T11: 0.1828 T22: 0.1848 REMARK 3 T33: 0.2137 T12: 0.0222 REMARK 3 T13: 0.0461 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 3.4230 L22: 4.1672 REMARK 3 L33: 3.7300 L12: -0.9528 REMARK 3 L13: 0.1276 L23: 0.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.1733 S12: -0.1907 S13: -0.6255 REMARK 3 S21: -0.1112 S22: 0.1193 S23: 0.3239 REMARK 3 S31: 0.4830 S32: -0.0388 S33: 0.0889 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 89 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8679 -8.6973 -30.0914 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1697 REMARK 3 T33: 0.1472 T12: 0.0051 REMARK 3 T13: -0.0177 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 4.3039 L22: 3.3834 REMARK 3 L33: 1.9028 L12: 2.4610 REMARK 3 L13: -1.7144 L23: -1.7289 REMARK 3 S TENSOR REMARK 3 S11: -0.0473 S12: -0.2205 S13: -0.6057 REMARK 3 S21: -0.0048 S22: -0.1371 S23: -0.3305 REMARK 3 S31: 0.1251 S32: 0.1295 S33: 0.1769 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 137 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7725 5.2842 -25.1162 REMARK 3 T TENSOR REMARK 3 T11: 0.3033 T22: 0.2386 REMARK 3 T33: 0.1241 T12: -0.1020 REMARK 3 T13: -0.0458 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 7.6286 L22: 5.7274 REMARK 3 L33: 4.3107 L12: -1.6555 REMARK 3 L13: -0.4823 L23: 1.1700 REMARK 3 S TENSOR REMARK 3 S11: 0.1287 S12: -0.8061 S13: 0.6253 REMARK 3 S21: 0.3542 S22: -0.0678 S23: -0.7071 REMARK 3 S31: -1.3189 S32: 0.8718 S33: -0.0017 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9TLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1292152923. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95374 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27768 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 57.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.03 M MAGNESIUM CHLORIDE HEXAHYDRATE, REMARK 280 0.03 M CALCIUM CHLORIDE DIHYDRATE, 0.01 M TRIS, 0.01M BICINE, REMARK 280 2.5% V/V MPD; 12.5% PEG1000; 12.5% W/V PEG3350, PH 8.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.97600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLU A 70 REMARK 465 ALA A 71 REMARK 465 GLY A 72 REMARK 465 VAL B 149 REMARK 465 GLU B 150 REMARK 465 ASP B 151 REMARK 465 LEU B 152 REMARK 465 GLU B 153 REMARK 465 GLY B 154 REMARK 465 GLY B 155 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 GLY C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 71 REMARK 465 GLY C 72 REMARK 465 GLU D 150 REMARK 465 ASP D 151 REMARK 465 LEU D 152 REMARK 465 GLU D 153 REMARK 465 GLY D 154 REMARK 465 GLY D 155 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 6 CG CD OE1 NE2 REMARK 470 LYS A 8 CD CE NZ REMARK 470 TRP A 9 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 9 CZ3 CH2 REMARK 470 GLU A 10 CG CD OE1 OE2 REMARK 470 ARG A 11 NE CZ NH1 NH2 REMARK 470 LYS A 15 CE NZ REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 SER A 34 OG REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 38 CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 8 CG CD OE1 OE2 REMARK 470 ARG B 15 NE CZ NH1 NH2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 36 CE NZ REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 62 CD CE NZ REMARK 470 ILE B 65 CG1 CG2 CD1 REMARK 470 LYS B 66 CE NZ REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 107 CE NZ REMARK 470 GLU B 112 CG CD OE1 OE2 REMARK 470 LYS B 136 CE NZ REMARK 470 HIS B 148 CG ND1 CD2 CE1 NE2 REMARK 470 ARG C 3 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 6 CD OE1 NE2 REMARK 470 GLN C 16 CG CD OE1 NE2 REMARK 470 GLU C 33 CG CD OE1 OE2 REMARK 470 ARG C 37 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 38 CG CD CE NZ REMARK 470 LYS C 39 CG CD CE NZ REMARK 470 ARG C 44 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 1 CG CD OE1 OE2 REMARK 470 LYS D 25 CD CE NZ REMARK 470 LYS D 36 CD CE NZ REMARK 470 GLU D 39 CG CD OE1 OE2 REMARK 470 LYS D 62 CG CD CE NZ REMARK 470 ILE D 65 CG1 CG2 CD1 REMARK 470 LYS D 66 CD CE NZ REMARK 470 GLU D 68 CG CD OE1 OE2 REMARK 470 ASP D 69 CG OD1 OD2 REMARK 470 LYS D 72 CG CD CE NZ REMARK 470 SER D 73 OG REMARK 470 ARG D 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 112 CD OE1 OE2 REMARK 470 LYS D 136 CE NZ REMARK 470 HIS D 148 CG ND1 CD2 CE1 NE2 REMARK 470 VAL D 149 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 -56.24 -120.62 REMARK 500 SER C 34 -71.22 -98.51 REMARK 500 PRO C 36 35.49 -94.35 REMARK 500 ARG C 37 -61.83 -106.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 9TLV A -2 72 PDB 9TLV 9TLV -2 72 DBREF 9TLV B 1 155 UNP Q07820 MCL1_HUMAN 173 327 DBREF 9TLV C -2 72 PDB 9TLV 9TLV -2 72 DBREF 9TLV D 1 155 UNP Q07820 MCL1_HUMAN 173 327 SEQADV 9TLV SER B 0 UNP Q07820 EXPRESSION TAG SEQADV 9TLV SER D 0 UNP Q07820 EXPRESSION TAG SEQRES 1 A 75 SER HIS MET GLY ALA ARG LEU ALA GLN LEU LYS TRP GLU SEQRES 2 A 75 ARG ALA ALA LEU LYS GLN ARG LEU ALA ALA LEU ASP GLN SEQRES 3 A 75 GLU ILE ALA ALA LEU THR GLN LYS ILE GLU SER ASP PRO SEQRES 4 A 75 ARG LYS LYS GLU LEU ILE PRO ARG LEU LEU ARG LEU ILE SEQRES 5 A 75 GLY ASP ARG VAL ASP LEU GLU ARG ARG ILE ALA ALA LEU SEQRES 6 A 75 ASP GLN GLU ILE ALA ALA LEU GLU ALA GLY SEQRES 1 B 156 SER GLU LEU TYR ARG GLN SER LEU GLU ILE ILE SER ARG SEQRES 2 B 156 TYR LEU ARG GLU GLN ALA THR GLY ALA LYS ASP THR LYS SEQRES 3 B 156 PRO MET GLY ARG SER GLY ALA THR SER ARG LYS ALA LEU SEQRES 4 B 156 GLU THR LEU ARG ARG VAL GLY ASP GLY VAL GLN ARG ASN SEQRES 5 B 156 HIS GLU THR ALA PHE GLN GLY MET LEU ARG LYS LEU ASP SEQRES 6 B 156 ILE LYS ASN GLU ASP ASP VAL LYS SER LEU SER ARG VAL SEQRES 7 B 156 MET ILE HIS VAL PHE SER ASP GLY VAL THR ASN TRP GLY SEQRES 8 B 156 ARG ILE VAL THR LEU ILE SER PHE GLY ALA PHE VAL ALA SEQRES 9 B 156 LYS HIS LEU LYS THR ILE ASN GLN GLU SER CYS ILE GLU SEQRES 10 B 156 PRO LEU ALA GLU SER ILE THR ASP VAL LEU VAL ARG THR SEQRES 11 B 156 LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY TRP ASP GLY SEQRES 12 B 156 PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU GLU GLY GLY SEQRES 1 C 75 SER HIS MET GLY ALA ARG LEU ALA GLN LEU LYS TRP GLU SEQRES 2 C 75 ARG ALA ALA LEU LYS GLN ARG LEU ALA ALA LEU ASP GLN SEQRES 3 C 75 GLU ILE ALA ALA LEU THR GLN LYS ILE GLU SER ASP PRO SEQRES 4 C 75 ARG LYS LYS GLU LEU ILE PRO ARG LEU LEU ARG LEU ILE SEQRES 5 C 75 GLY ASP ARG VAL ASP LEU GLU ARG ARG ILE ALA ALA LEU SEQRES 6 C 75 ASP GLN GLU ILE ALA ALA LEU GLU ALA GLY SEQRES 1 D 156 SER GLU LEU TYR ARG GLN SER LEU GLU ILE ILE SER ARG SEQRES 2 D 156 TYR LEU ARG GLU GLN ALA THR GLY ALA LYS ASP THR LYS SEQRES 3 D 156 PRO MET GLY ARG SER GLY ALA THR SER ARG LYS ALA LEU SEQRES 4 D 156 GLU THR LEU ARG ARG VAL GLY ASP GLY VAL GLN ARG ASN SEQRES 5 D 156 HIS GLU THR ALA PHE GLN GLY MET LEU ARG LYS LEU ASP SEQRES 6 D 156 ILE LYS ASN GLU ASP ASP VAL LYS SER LEU SER ARG VAL SEQRES 7 D 156 MET ILE HIS VAL PHE SER ASP GLY VAL THR ASN TRP GLY SEQRES 8 D 156 ARG ILE VAL THR LEU ILE SER PHE GLY ALA PHE VAL ALA SEQRES 9 D 156 LYS HIS LEU LYS THR ILE ASN GLN GLU SER CYS ILE GLU SEQRES 10 D 156 PRO LEU ALA GLU SER ILE THR ASP VAL LEU VAL ARG THR SEQRES 11 D 156 LYS ARG ASP TRP LEU VAL LYS GLN ARG GLY TRP ASP GLY SEQRES 12 D 156 PHE VAL GLU PHE PHE HIS VAL GLU ASP LEU GLU GLY GLY FORMUL 5 HOH *142(H2 O) HELIX 1 AA1 GLY A 1 ASP A 35 1 35 HELIX 2 AA2 GLU A 40 LEU A 69 1 30 HELIX 3 AA3 GLU B 1 GLY B 20 1 20 HELIX 4 AA4 SER B 30 HIS B 52 1 23 HELIX 5 AA5 HIS B 52 ASP B 64 1 13 HELIX 6 AA6 ASN B 67 SER B 83 1 17 HELIX 7 AA7 ASN B 88 ILE B 109 1 22 HELIX 8 AA8 GLN B 111 SER B 113 5 3 HELIX 9 AA9 CYS B 114 GLN B 137 1 24 HELIX 10 AB1 ARG B 138 HIS B 148 1 11 HELIX 11 AB2 LEU C 4 SER C 34 1 31 HELIX 12 AB3 GLU C 40 GLU C 70 1 31 HELIX 13 AB4 GLU D 1 GLY D 20 1 20 HELIX 14 AB5 SER D 30 HIS D 52 1 23 HELIX 15 AB6 HIS D 52 ASP D 64 1 13 HELIX 16 AB7 ASN D 67 SER D 83 1 17 HELIX 17 AB8 ASN D 88 ILE D 109 1 22 HELIX 18 AB9 GLN D 111 SER D 113 5 3 HELIX 19 AC1 CYS D 114 GLN D 137 1 24 HELIX 20 AC2 ARG D 138 PHE D 147 1 10 CRYST1 62.194 57.952 63.079 90.00 114.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016079 0.000000 0.007239 0.00000 SCALE2 0.000000 0.017256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017386 0.00000 MASTER 541 0 0 20 0 0 0 6 3442 4 0 36 END