HEADER OXIDOREDUCTASE 12-DEC-25 9TM7 TITLE UNSPECIFIC PEROXYGENASE FROM DALDINIA CHILDIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNSPECIFIC PEROXYGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HEME HALOPEROXIDASE FAMILY PROFILE DOMAIN-CONTAINING COMPND 5 PROTEIN; COMPND 6 EC: 1.11.2.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DALDINIA CHILDIAE; SOURCE 3 ORGANISM_TAXID: 326645; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, HEME, UNSPECIFIC PEROXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR A.MCKENZIE,C.CLARK,B.MELLING,J.DOMENECH,G.GROGAN REVDAT 1 29-JUL-26 9TM7 0 JRNL AUTH A.MCKENZIE,C.CLARK,K.A.S.CORNISH,J.LI,J.DOMENECH,B.MELLING, JRNL AUTH 2 M.P.H.RALSTON,J.CARTWRIGHT,N.P.MULHOLLAND,W.P.UNSWORTH, JRNL AUTH 3 G.GROGAN JRNL TITL STRUCTURE, CHARACTERISATION AND APPLICATION OF AN UNSPECIFIC JRNL TITL 2 PEROXYGENASE FROM DALDINIA CHILDIAE. JRNL REF RSC CHEM BIOL 2026 JRNL REFN ESSN 2633-0679 JRNL PMID 42328014 JRNL DOI 10.1039/D6CB00141F REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0431 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 30097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1612 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2184 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3750 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3294 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 89 REMARK 3 SOLVENT ATOMS : 189 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.15000 REMARK 3 B22 (A**2) : -2.92000 REMARK 3 B33 (A**2) : 5.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.37000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.186 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.173 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.224 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3479 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3081 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4768 ; 1.644 ; 1.858 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7096 ; 0.594 ; 1.728 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 431 ; 6.146 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 32 ; 8.890 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;13.582 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 512 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4159 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 777 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1730 ; 3.152 ; 3.524 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1730 ; 3.152 ; 3.525 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2159 ; 4.422 ; 6.323 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2160 ; 4.421 ; 6.324 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1749 ; 3.552 ; 3.719 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1748 ; 3.553 ; 3.720 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2610 ; 5.133 ; 6.747 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4094 ; 6.945 ;35.020 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4071 ; 6.836 ;34.900 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9TM7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1292152969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-AUG-24 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31736 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 40.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 6000; 0.2 M CACL2 REMARK 280 DIHYDRATE; 0.1 M MES PH 6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.80200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.02450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.80200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.02450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 453 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 505 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 SER A -6 REMARK 465 SER A -5 REMARK 465 GLY A -4 REMARK 465 LEU A -3 REMARK 465 VAL A -2 REMARK 465 PRO A -1 REMARK 465 ARG A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 MET A 7 REMARK 465 THR A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLN A 11 REMARK 465 GLN A 12 REMARK 465 MET A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 ASP A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 238 REMARK 465 SER A 239 REMARK 465 PRO A 240 REMARK 465 GLY A 241 REMARK 465 THR A 242 REMARK 465 ILE A 243 REMARK 465 SER A 244 REMARK 465 LYS A 245 REMARK 465 ARG A 246 REMARK 465 THR A 247 REMARK 465 GLU A 248 REMARK 465 LYS A 249 REMARK 465 SER A 250 REMARK 465 SER A 251 REMARK 465 GLU A 252 REMARK 465 LYS A 253 REMARK 465 ARG A 254 REMARK 465 ALA A 255 REMARK 465 GLU A 256 REMARK 465 LYS A 257 REMARK 465 ARG A 258 REMARK 465 CYS A 259 REMARK 465 PRO A 260 REMARK 465 PHE A 261 REMARK 465 HIS A 262 REMARK 465 MET B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 LEU B -3 REMARK 465 VAL B -2 REMARK 465 PRO B -1 REMARK 465 ARG B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 465 MET B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 MET B 7 REMARK 465 THR B 8 REMARK 465 GLY B 9 REMARK 465 GLY B 10 REMARK 465 GLN B 11 REMARK 465 GLN B 12 REMARK 465 MET B 13 REMARK 465 GLY B 14 REMARK 465 ARG B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 ASP B 18 REMARK 465 THR B 19 REMARK 465 ALA B 20 REMARK 465 PRO B 21 REMARK 465 GLN B 238 REMARK 465 SER B 239 REMARK 465 PRO B 240 REMARK 465 GLY B 241 REMARK 465 THR B 242 REMARK 465 ILE B 243 REMARK 465 SER B 244 REMARK 465 LYS B 245 REMARK 465 ARG B 246 REMARK 465 THR B 247 REMARK 465 GLU B 248 REMARK 465 LYS B 249 REMARK 465 SER B 250 REMARK 465 SER B 251 REMARK 465 GLU B 252 REMARK 465 LYS B 253 REMARK 465 ARG B 254 REMARK 465 ALA B 255 REMARK 465 GLU B 256 REMARK 465 LYS B 257 REMARK 465 ARG B 258 REMARK 465 CYS B 259 REMARK 465 PRO B 260 REMARK 465 PHE B 261 REMARK 465 HIS B 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 27 CG CD REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 PRO A 87 CG CD REMARK 470 ASN A 88 CG OD1 ND2 REMARK 470 THR A 163 CG2 REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 229 CG CD CE NZ REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 SER B 52 OG REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 LEU B 68 CD1 REMARK 470 SER B 74 OG REMARK 470 GLN B 86 CG CD OE1 NE2 REMARK 470 THR B 91 CG2 REMARK 470 ASP B 137 CG OD1 OD2 REMARK 470 GLU B 187 CG CD OE1 OE2 REMARK 470 LYS B 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 401 O HOH A 442 2.04 REMARK 500 OE1 GLU B 201 O HOH B 401 2.16 REMARK 500 O GLN B 86 O HOH B 402 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 102 -78.33 -92.94 REMARK 500 PRO A 206 45.39 -78.59 REMARK 500 PRO B 47 124.90 -39.01 REMARK 500 ASN B 67 34.17 74.17 REMARK 500 ILE B 102 -77.58 -92.22 REMARK 500 PRO B 206 47.43 -81.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 151 0.07 SIDE CHAIN REMARK 500 ARG B 151 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 482 DISTANCE = 6.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 34 SG REMARK 620 2 HEM A 302 NA 96.4 REMARK 620 3 HEM A 302 NB 98.1 90.9 REMARK 620 4 HEM A 302 NC 90.3 172.7 90.9 REMARK 620 5 HEM A 302 ND 90.5 87.8 171.4 89.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE1 REMARK 620 2 HIS A 105 O 87.3 REMARK 620 3 SER A 108 OG 173.0 90.8 REMARK 620 4 HEM A 302 O2A 106.0 80.7 80.3 REMARK 620 5 HOH A 449 O 92.6 167.2 90.7 87.0 REMARK 620 6 HOH A 454 O 86.5 99.9 87.1 167.4 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 34 SG REMARK 620 2 HEM B 303 NA 97.6 REMARK 620 3 HEM B 303 NB 100.7 90.5 REMARK 620 4 HEM B 303 NC 94.2 167.6 91.2 REMARK 620 5 HEM B 303 ND 88.8 86.1 170.3 90.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 104 OE1 REMARK 620 2 HIS B 105 O 83.7 REMARK 620 3 SER B 108 OG 175.2 94.8 REMARK 620 4 HEM B 303 O2A 105.9 83.9 78.5 REMARK 620 5 HOH B 419 O 90.8 164.1 91.8 83.2 REMARK 620 6 HOH B 443 O 88.2 97.8 87.4 165.9 96.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 224 OE1 REMARK 620 2 ASP B 228 OD1 85.5 REMARK 620 3 ASP B 228 OD2 85.2 52.1 REMARK 620 4 HOH B 425 O 71.6 130.3 81.8 REMARK 620 5 HOH B 461 O 99.5 84.4 136.0 141.4 REMARK 620 N 1 2 3 4 DBREF 9TM7 A -16 262 PDB 9TM7 9TM7 -16 262 DBREF 9TM7 B -16 262 PDB 9TM7 9TM7 -16 262 SEQRES 1 A 279 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 279 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 279 GLY GLN GLN MET GLY ARG GLY SER ASP THR ALA PRO TRP SEQRES 4 A 279 GLU GLY PRO GLY PRO SER ASP VAL ARG GLY PRO CYS PRO SEQRES 5 A 279 MET LEU ASN SER LEU ALA ASN HIS GLY PHE LEU PRO HIS SEQRES 6 A 279 ASP GLY LYS SER ILE ASN VAL ASN LYS THR VAL ASP ALA SEQRES 7 A 279 LEU SER SER ALA LEU ASN LEU ALA PRO GLU LEU ALA SER SEQRES 8 A 279 PHE LEU HIS SER PHE ALA VAL THR THR ASN PRO GLN PRO SEQRES 9 A 279 ASN ALA THR THR PHE ASP LEU ASP HIS LEU SER ARG HIS SEQRES 10 A 279 ASN ILE LEU GLU HIS ASP GLY SER LEU SER ARG GLN ASP SEQRES 11 A 279 SER PHE PHE GLY PRO ALA ASP VAL PHE ASN GLU ALA VAL SEQRES 12 A 279 PHE ASN GLN THR LYS SER TYR TRP THR GLY ASP VAL ILE SEQRES 13 A 279 THR ILE GLN MET ALA ALA ASN ALA ARG VAL ALA ARG LEU SEQRES 14 A 279 MET THR SER ASN LEU THR ASN PRO GLU TYR THR LEU SER SEQRES 15 A 279 HIS LEU GLY SER ASP PHE SER ILE GLY GLU SER VAL ALA SEQRES 16 A 279 TYR LEU SER ILE LEU GLY SER LYS GLU THR GLY GLU VAL SEQRES 17 A 279 PRO LYS ALA TYR VAL GLU TYR LEU PHE GLU ASN GLU ARG SEQRES 18 A 279 LEU PRO TYR GLU LEU GLY PHE SER LYS MET LYS GLU PRO SEQRES 19 A 279 MET THR GLU SER ASP LEU GLU GLY LEU MET ASP LYS LEU SEQRES 20 A 279 VAL ALA SER GLN HIS PHE PRO GLN SER PRO GLY THR ILE SEQRES 21 A 279 SER LYS ARG THR GLU LYS SER SER GLU LYS ARG ALA GLU SEQRES 22 A 279 LYS ARG CYS PRO PHE HIS SEQRES 1 B 279 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 279 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 279 GLY GLN GLN MET GLY ARG GLY SER ASP THR ALA PRO TRP SEQRES 4 B 279 GLU GLY PRO GLY PRO SER ASP VAL ARG GLY PRO CYS PRO SEQRES 5 B 279 MET LEU ASN SER LEU ALA ASN HIS GLY PHE LEU PRO HIS SEQRES 6 B 279 ASP GLY LYS SER ILE ASN VAL ASN LYS THR VAL ASP ALA SEQRES 7 B 279 LEU SER SER ALA LEU ASN LEU ALA PRO GLU LEU ALA SER SEQRES 8 B 279 PHE LEU HIS SER PHE ALA VAL THR THR ASN PRO GLN PRO SEQRES 9 B 279 ASN ALA THR THR PHE ASP LEU ASP HIS LEU SER ARG HIS SEQRES 10 B 279 ASN ILE LEU GLU HIS ASP GLY SER LEU SER ARG GLN ASP SEQRES 11 B 279 SER PHE PHE GLY PRO ALA ASP VAL PHE ASN GLU ALA VAL SEQRES 12 B 279 PHE ASN GLN THR LYS SER TYR TRP THR GLY ASP VAL ILE SEQRES 13 B 279 THR ILE GLN MET ALA ALA ASN ALA ARG VAL ALA ARG LEU SEQRES 14 B 279 MET THR SER ASN LEU THR ASN PRO GLU TYR THR LEU SER SEQRES 15 B 279 HIS LEU GLY SER ASP PHE SER ILE GLY GLU SER VAL ALA SEQRES 16 B 279 TYR LEU SER ILE LEU GLY SER LYS GLU THR GLY GLU VAL SEQRES 17 B 279 PRO LYS ALA TYR VAL GLU TYR LEU PHE GLU ASN GLU ARG SEQRES 18 B 279 LEU PRO TYR GLU LEU GLY PHE SER LYS MET LYS GLU PRO SEQRES 19 B 279 MET THR GLU SER ASP LEU GLU GLY LEU MET ASP LYS LEU SEQRES 20 B 279 VAL ALA SER GLN HIS PHE PRO GLN SER PRO GLY THR ILE SEQRES 21 B 279 SER LYS ARG THR GLU LYS SER SER GLU LYS ARG ALA GLU SEQRES 22 B 279 LYS ARG CYS PRO PHE HIS HET MG A 301 1 HET HEM A 302 43 HET MG B 301 1 HET MG B 302 1 HET HEM B 303 43 HETNAM MG MAGNESIUM ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 MG 3(MG 2+) FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 8 HOH *189(H2 O) HELIX 1 AA1 CYS A 34 HIS A 43 1 10 HELIX 2 AA2 ASN A 54 ASN A 67 1 14 HELIX 3 AA3 ALA A 69 VAL A 81 1 13 HELIX 4 AA4 THR A 82 ASN A 84 5 3 HELIX 5 AA5 ASP A 93 SER A 98 1 6 HELIX 6 AA6 ASN A 123 SER A 132 1 10 HELIX 7 AA7 THR A 140 ASN A 159 1 20 HELIX 8 AA8 SER A 165 GLY A 184 1 20 HELIX 9 AA9 LYS A 193 GLU A 203 1 11 HELIX 10 AB1 PRO A 206 GLY A 210 5 5 HELIX 11 AB2 THR A 219 SER A 233 1 15 HELIX 12 AB3 CYS B 34 HIS B 43 1 10 HELIX 13 AB4 ASN B 54 ASN B 67 1 14 HELIX 14 AB5 ALA B 69 VAL B 81 1 13 HELIX 15 AB6 THR B 82 ASN B 84 5 3 HELIX 16 AB7 ASP B 95 ARG B 99 5 5 HELIX 17 AB8 ASN B 123 SER B 132 1 10 HELIX 18 AB9 THR B 140 ASN B 159 1 20 HELIX 19 AC1 SER B 165 GLY B 184 1 20 HELIX 20 AC2 LYS B 193 GLU B 203 1 11 HELIX 21 AC3 PRO B 206 GLY B 210 5 5 HELIX 22 AC4 THR B 219 SER B 233 1 15 SHEET 1 AA1 2 VAL A 138 ILE A 139 0 SHEET 2 AA1 2 VAL A 191 PRO A 192 -1 O VAL A 191 N ILE A 139 SHEET 1 AA2 2 VAL B 138 ILE B 139 0 SHEET 2 AA2 2 VAL B 191 PRO B 192 -1 O VAL B 191 N ILE B 139 LINK SG CYS A 34 FE HEM A 302 1555 1555 2.40 LINK OE1 GLU A 104 MG MG A 301 1555 1555 2.42 LINK O HIS A 105 MG MG A 301 1555 1555 2.27 LINK OG SER A 108 MG MG A 301 1555 1555 2.28 LINK MG MG A 301 O2A HEM A 302 1555 1555 2.28 LINK MG MG A 301 O HOH A 449 1555 1555 2.15 LINK MG MG A 301 O HOH A 454 1555 1555 2.19 LINK SG CYS B 34 FE HEM B 303 1555 1555 2.23 LINK OE1 GLU B 104 MG MG B 301 1555 1555 2.35 LINK O HIS B 105 MG MG B 301 1555 1555 2.15 LINK OG SER B 108 MG MG B 301 1555 1555 2.27 LINK OE1 GLU B 224 MG MG B 302 1555 1555 2.24 LINK OD1 ASP B 228 MG MG B 302 1555 1555 2.46 LINK OD2 ASP B 228 MG MG B 302 1555 1555 2.56 LINK MG MG B 301 O2A HEM B 303 1555 1555 2.26 LINK MG MG B 301 O HOH B 419 1555 1555 2.36 LINK MG MG B 301 O HOH B 443 1555 1555 2.18 LINK MG MG B 302 O HOH B 425 1555 1555 2.18 LINK MG MG B 302 O HOH B 461 1555 1555 2.15 CRYST1 81.604 78.049 62.585 90.00 95.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012254 0.000000 0.001110 0.00000 SCALE2 0.000000 0.012812 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016044 0.00000 CONECT 99 3340 CONECT 619 3297 CONECT 624 3297 CONECT 648 3297 CONECT 1739 3385 CONECT 2260 3341 CONECT 2265 3341 CONECT 2289 3341 CONECT 3194 3342 CONECT 3222 3342 CONECT 3223 3342 CONECT 3297 619 624 648 3311 CONECT 3297 3434 3439 CONECT 3298 3302 3329 CONECT 3299 3305 3312 CONECT 3300 3315 3319 CONECT 3301 3322 3326 CONECT 3302 3298 3303 3336 CONECT 3303 3302 3304 3307 CONECT 3304 3303 3305 3306 CONECT 3305 3299 3304 3336 CONECT 3306 3304 CONECT 3307 3303 3308 CONECT 3308 3307 3309 CONECT 3309 3308 3310 3311 CONECT 3310 3309 CONECT 3311 3297 3309 CONECT 3312 3299 3313 3337 CONECT 3313 3312 3314 3316 CONECT 3314 3313 3315 3317 CONECT 3315 3300 3314 3337 CONECT 3316 3313 CONECT 3317 3314 3318 CONECT 3318 3317 CONECT 3319 3300 3320 3338 CONECT 3320 3319 3321 3323 CONECT 3321 3320 3322 3324 CONECT 3322 3301 3321 3338 CONECT 3323 3320 CONECT 3324 3321 3325 CONECT 3325 3324 CONECT 3326 3301 3327 3339 CONECT 3327 3326 3328 3330 CONECT 3328 3327 3329 3331 CONECT 3329 3298 3328 3339 CONECT 3330 3327 CONECT 3331 3328 3332 CONECT 3332 3331 3333 CONECT 3333 3332 3334 3335 CONECT 3334 3333 CONECT 3335 3333 CONECT 3336 3302 3305 3340 CONECT 3337 3312 3315 3340 CONECT 3338 3319 3322 3340 CONECT 3339 3326 3329 3340 CONECT 3340 99 3336 3337 3338 CONECT 3340 3339 CONECT 3341 2260 2265 2289 3356 CONECT 3341 3511 3535 CONECT 3342 3194 3222 3223 3517 CONECT 3342 3553 CONECT 3343 3347 3374 CONECT 3344 3350 3357 CONECT 3345 3360 3364 CONECT 3346 3367 3371 CONECT 3347 3343 3348 3381 CONECT 3348 3347 3349 3352 CONECT 3349 3348 3350 3351 CONECT 3350 3344 3349 3381 CONECT 3351 3349 CONECT 3352 3348 3353 CONECT 3353 3352 3354 CONECT 3354 3353 3355 3356 CONECT 3355 3354 CONECT 3356 3341 3354 CONECT 3357 3344 3358 3382 CONECT 3358 3357 3359 3361 CONECT 3359 3358 3360 3362 CONECT 3360 3345 3359 3382 CONECT 3361 3358 CONECT 3362 3359 3363 CONECT 3363 3362 CONECT 3364 3345 3365 3383 CONECT 3365 3364 3366 3368 CONECT 3366 3365 3367 3369 CONECT 3367 3346 3366 3383 CONECT 3368 3365 CONECT 3369 3366 3370 CONECT 3370 3369 CONECT 3371 3346 3372 3384 CONECT 3372 3371 3373 3375 CONECT 3373 3372 3374 3376 CONECT 3374 3343 3373 3384 CONECT 3375 3372 CONECT 3376 3373 3377 CONECT 3377 3376 3378 CONECT 3378 3377 3379 3380 CONECT 3379 3378 CONECT 3380 3378 CONECT 3381 3347 3350 3385 CONECT 3382 3357 3360 3385 CONECT 3383 3364 3367 3385 CONECT 3384 3371 3374 3385 CONECT 3385 1739 3381 3382 3383 CONECT 3385 3384 CONECT 3434 3297 CONECT 3439 3297 CONECT 3511 3341 CONECT 3517 3342 CONECT 3535 3341 CONECT 3553 3342 MASTER 550 0 5 22 4 0 0 6 3572 2 111 44 END