HEADER UNKNOWN FUNCTION 12-DEC-25 9TMH TITLE NOVEL EIGHT FOLD - PROTEIN WITH 8.3 KNOT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN WITH 8.3 KNOT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COPROCOCCUS SP. OM06-34AC; SOURCE 3 ORGANISM_TAXID: 2293095; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS 8.3 KNOT, EIGHT FOLD, KNOTTED PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.MOZAJEW,Y.KIM,J.I.SULKOWSKA REVDAT 1 21-OCT-26 9TMH 0 JRNL AUTH M.MOZAJEW,M.SIKORA,M.FORTUNKA,A.P.PERLINSKA,A.KLUZA, JRNL AUTH 2 S.NIEWIECZERZAL,F.B.DA SILVA,M.LUKASZEWICZ,J.A.SIKORSKA, JRNL AUTH 3 L.J.MIKULSKA,S.E.JACKSON,J.I.SULKOWSKA JRNL TITL UNIQUE FEATURES OF EIGHT FOLD - PROTEINS WITH THE MOST JRNL TITL 2 COMPLEX 8.3 KNOTTED TOPOLOGY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 59311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.2300 - 6.0600 0.99 2891 152 0.1800 0.2569 REMARK 3 2 6.0600 - 4.8100 1.00 2756 166 0.1819 0.2004 REMARK 3 3 4.8100 - 4.2000 1.00 2746 138 0.1466 0.1861 REMARK 3 4 4.2000 - 3.8200 1.00 2737 142 0.1615 0.1931 REMARK 3 5 3.8200 - 3.5500 1.00 2731 131 0.1765 0.2159 REMARK 3 6 3.5500 - 3.3400 1.00 2715 127 0.1955 0.2711 REMARK 3 7 3.3400 - 3.1700 0.99 2661 161 0.2139 0.2590 REMARK 3 8 3.1700 - 3.0300 1.00 2681 146 0.2235 0.2780 REMARK 3 9 3.0300 - 2.9200 1.00 2677 149 0.2239 0.2804 REMARK 3 10 2.9200 - 2.8200 1.00 2707 117 0.2083 0.2683 REMARK 3 11 2.8200 - 2.7300 1.00 2718 115 0.1888 0.2268 REMARK 3 12 2.7300 - 2.6500 1.00 2681 130 0.1922 0.2793 REMARK 3 13 2.6500 - 2.5800 1.00 2705 131 0.2094 0.2642 REMARK 3 14 2.5800 - 2.5200 1.00 2684 137 0.2118 0.2901 REMARK 3 15 2.5200 - 2.4600 1.00 2658 139 0.2100 0.2760 REMARK 3 16 2.4600 - 2.4100 1.00 2644 144 0.2136 0.2898 REMARK 3 17 2.4100 - 2.3600 1.00 2670 145 0.2207 0.2904 REMARK 3 18 2.3600 - 2.3100 1.00 2642 163 0.2143 0.2706 REMARK 3 19 2.3100 - 2.2700 0.97 2547 150 0.2344 0.2726 REMARK 3 20 2.2700 - 2.2300 0.99 2663 133 0.2631 0.2943 REMARK 3 21 2.2300 - 2.2000 0.93 2446 135 0.2999 0.3438 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7741 REMARK 3 ANGLE : 0.891 10441 REMARK 3 CHIRALITY : 0.050 1197 REMARK 3 PLANARITY : 0.006 1346 REMARK 3 DIHEDRAL : 16.953 2902 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0534 38.7404 79.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.2216 REMARK 3 T33: 0.2512 T12: -0.0178 REMARK 3 T13: 0.0184 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 6.5357 L22: 3.4633 REMARK 3 L33: 3.0035 L12: -0.6441 REMARK 3 L13: -2.7893 L23: 1.7298 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: 0.2147 S13: -0.0146 REMARK 3 S21: -0.4568 S22: 0.1753 S23: -0.3581 REMARK 3 S31: -0.0392 S32: 0.0685 S33: 0.0759 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.0824 49.5113 108.0615 REMARK 3 T TENSOR REMARK 3 T11: 0.3034 T22: 0.3160 REMARK 3 T33: 0.2617 T12: 0.0137 REMARK 3 T13: 0.0099 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.8603 L22: 1.3789 REMARK 3 L33: 0.8548 L12: 0.2958 REMARK 3 L13: 0.4858 L23: 0.8626 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.2672 S13: -0.0154 REMARK 3 S21: 0.2316 S22: -0.0590 S23: -0.0635 REMARK 3 S31: 0.0913 S32: -0.0938 S33: 0.0378 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 315 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0343 44.0477 81.3258 REMARK 3 T TENSOR REMARK 3 T11: 0.3479 T22: 0.3604 REMARK 3 T33: 0.4091 T12: -0.0330 REMARK 3 T13: 0.0517 T23: 0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.5538 L22: 3.1494 REMARK 3 L33: 1.8157 L12: -0.4833 REMARK 3 L13: 0.3050 L23: 1.3427 REMARK 3 S TENSOR REMARK 3 S11: -0.0155 S12: 0.0010 S13: 0.1677 REMARK 3 S21: -0.6942 S22: 0.1785 S23: -0.3136 REMARK 3 S31: -0.3585 S32: 0.2040 S33: -0.1680 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0544 57.4914 118.8308 REMARK 3 T TENSOR REMARK 3 T11: 0.3759 T22: 0.3108 REMARK 3 T33: 0.2492 T12: 0.0008 REMARK 3 T13: -0.0043 T23: -0.0941 REMARK 3 L TENSOR REMARK 3 L11: 4.1126 L22: 5.6277 REMARK 3 L33: 3.7057 L12: 0.9357 REMARK 3 L13: -0.6023 L23: -3.1248 REMARK 3 S TENSOR REMARK 3 S11: -0.1123 S12: -0.4472 S13: -0.2944 REMARK 3 S21: 0.2812 S22: -0.0404 S23: -0.2798 REMARK 3 S31: 0.2223 S32: -0.1162 S33: 0.1425 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -3 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4317 36.8243 85.8956 REMARK 3 T TENSOR REMARK 3 T11: 0.3728 T22: 0.2948 REMARK 3 T33: 0.3614 T12: 0.0806 REMARK 3 T13: -0.0996 T23: -0.0486 REMARK 3 L TENSOR REMARK 3 L11: 8.0433 L22: 5.1199 REMARK 3 L33: 1.4311 L12: 3.6242 REMARK 3 L13: -0.5588 L23: -0.3507 REMARK 3 S TENSOR REMARK 3 S11: 0.2271 S12: 0.1774 S13: -0.3219 REMARK 3 S21: -0.1320 S22: -0.1155 S23: 0.4888 REMARK 3 S31: 0.2148 S32: -0.1132 S33: -0.0631 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5362 66.3282 85.6946 REMARK 3 T TENSOR REMARK 3 T11: 0.3036 T22: 0.3008 REMARK 3 T33: 0.2771 T12: 0.0309 REMARK 3 T13: 0.0278 T23: 0.0550 REMARK 3 L TENSOR REMARK 3 L11: 1.8642 L22: 2.1139 REMARK 3 L33: 0.6301 L12: -0.8504 REMARK 3 L13: 0.2173 L23: 0.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: 0.2185 S13: 0.3961 REMARK 3 S21: -0.2953 S22: -0.0725 S23: -0.1690 REMARK 3 S31: -0.1028 S32: -0.0314 S33: -0.0027 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 314 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5888 40.3780 90.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.4317 REMARK 3 T33: 0.4993 T12: 0.0189 REMARK 3 T13: -0.0530 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.6933 L22: 5.4202 REMARK 3 L33: 2.5324 L12: -0.7126 REMARK 3 L13: 0.3176 L23: 2.4477 REMARK 3 S TENSOR REMARK 3 S11: 0.1490 S12: 0.1318 S13: -0.1282 REMARK 3 S21: -0.0837 S22: -0.1321 S23: 0.3951 REMARK 3 S31: -0.0979 S32: -0.2967 S33: 0.0156 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 398 THROUGH 473 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1248 79.2369 89.9406 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.2198 REMARK 3 T33: 0.4391 T12: 0.0492 REMARK 3 T13: 0.0018 T23: -0.0335 REMARK 3 L TENSOR REMARK 3 L11: 3.7211 L22: 1.8740 REMARK 3 L33: 7.1658 L12: 0.6802 REMARK 3 L13: -1.3380 L23: -1.8540 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: 0.2672 S13: 0.6696 REMARK 3 S21: -0.1029 S22: 0.1242 S23: 0.0266 REMARK 3 S31: -0.0971 S32: -0.1953 S33: -0.0118 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid -1 through 66 or REMARK 3 resid 68 through 90 or resid 92 through REMARK 3 115 or resid 117 through 314 or resid 316 REMARK 3 through 333 or resid 335 through 387 or REMARK 3 resid 391 through 473)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid -1 through 66 or REMARK 3 resid 68 through 90 or resid 92 through REMARK 3 115 or resid 117 through 333 or resid 335 REMARK 3 through 387 or (resid 391 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 392 through 473)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9TMH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1292152927. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-25 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97905 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.99200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MM HEPES PH 7.5, 250 MM NACL, 1 MM REMARK 280 MGCL2 AND 1 MM TCEP IN 0.2 M CALCIUM ACETATE 0.1 M TRIS:HCL PH REMARK 280 7.0 20% (W/V) PEG 3000, 15% ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.67450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.07150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.27150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.07150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.67450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.27150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ALA A 389 REMARK 465 VAL A 390 REMARK 465 GLU A 475 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B 315 REMARK 465 ILE B 388 REMARK 465 ALA B 389 REMARK 465 VAL B 390 REMARK 465 GLU B 474 REMARK 465 GLU B 475 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 391 CG SD CE REMARK 470 ASP B -3 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 85 CB CYS B 85 SG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 20 -32.64 -133.10 REMARK 500 ASP A 144 -175.47 -69.74 REMARK 500 PHE A 160 51.23 -104.11 REMARK 500 ASP A 315 19.69 55.22 REMARK 500 MET A 473 33.86 -86.69 REMARK 500 ARG B 20 -36.96 -131.95 REMARK 500 ASP B 133 -161.71 -100.45 REMARK 500 PHE B 160 50.95 -102.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 513 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 397 OD1 REMARK 620 2 ASN B 440 OD1 25.1 REMARK 620 3 HOH B 603 O 155.8 135.1 REMARK 620 4 HOH B 615 O 81.7 56.7 83.7 REMARK 620 5 HOH B 624 O 143.4 167.8 53.5 134.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 512 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 440 OD1 REMARK 620 2 HOH A 642 O 76.6 REMARK 620 3 HOH A 670 O 104.6 67.7 REMARK 620 4 HOH A 720 O 68.5 119.1 74.9 REMARK 620 5 ASP B 397 OD1 99.4 52.9 14.8 85.3 REMARK 620 6 HOH B 714 O 165.9 114.6 73.8 97.8 82.2 REMARK 620 N 1 2 3 4 5 DBREF 9TMH A -6 475 PDB 9TMH 9TMH -6 475 DBREF 9TMH B -6 475 PDB 9TMH 9TMH -6 475 SEQRES 1 A 482 GLN GLY ILE ASP PRO PHE THR MET TYR ASN GLU GLU LYS SEQRES 2 A 482 LYS LEU ILE THR ASP ILE GLN ARG LYS LYS ASP LEU ASP SEQRES 3 A 482 ARG ASN LEU ALA LEU PHE ALA GLY VAL ALA SER LYS ALA SEQRES 4 A 482 ASN TYR GLU TYR ALA CYS HIS LYS PHE THR LEU ASN TYR SEQRES 5 A 482 LEU THR LEU LYS ASP MET HIS MET ASP GLY ASP VAL PRO SEQRES 6 A 482 ASP ASP PRO TYR ILE ALA GLN CYS GLN ALA VAL ILE ASP SEQRES 7 A 482 LYS LEU ILE GLY ASP PHE VAL VAL GLY ASP LYS THR VAL SEQRES 8 A 482 CYS GLU ASP ALA ASP MET LYS LEU ILE SER ASP VAL ARG SEQRES 9 A 482 ASN THR ILE THR ALA LYS MET LYS VAL LEU THR SER TYR SEQRES 10 A 482 THR ASP ALA PHE GLU MET TYR GLU TYR ILE LEU ASN ARG SEQRES 11 A 482 LYS GLU TYR SER TYR SER GLU ASN VAL ASP GLU GLU ILE SEQRES 12 A 482 GLN LYS GLU LEU LYS GLU LEU ASP GLU ALA GLY VAL SER SEQRES 13 A 482 ASP PHE ALA GLU GLU ILE TYR ARG PHE VAL PHE ALA ASP SEQRES 14 A 482 GLN ASP LYS VAL ALA ILE ASN SER LYS LEU GLN SER ILE SEQRES 15 A 482 ILE GLY GLN LEU PRO ILE ARG MET THR LYS ASN ARG PHE SEQRES 16 A 482 TYR ASP ILE LEU GLY GLU THR LEU ASP ILE TYR ASN GLY SEQRES 17 A 482 VAL GLU LYS GLU SER LEU ASP GLN PHE ILE GLU MET ILE SEQRES 18 A 482 GLU ASN THR ALA LEU ILE ARG LEU PRO GLU GLY PHE GLU SEQRES 19 A 482 THR GLU TYR HIS GLU LEU HIS GLU ALA LEU GLU VAL LEU SEQRES 20 A 482 LYS THR GLY ASP TYR THR ALA LEU ASP TYR ASP GLY TYR SEQRES 21 A 482 ARG LYS LEU THR ASP VAL LEU ASP ARG SER ALA ALA PHE SEQRES 22 A 482 LEU ASN SER VAL VAL THR GLU TYR MET LEU ILE ILE GLU SEQRES 23 A 482 LEU VAL ASN ASP LEU TYR VAL MET MET LEU ALA LEU ASP SEQRES 24 A 482 SER LYS LYS GLY VAL SER GLU SER CYS LYS LYS ALA MET SEQRES 25 A 482 THR VAL ILE GLU LYS ALA VAL ALA ASP ASP GLY GLU HIS SEQRES 26 A 482 LEU GLU ASP VAL TYR ALA LEU LEU ASP ASP ILE VAL GLY SEQRES 27 A 482 GLU GLN GLU LEU ALA GLY GLU HIS LYS VAL MET LEU GLU SEQRES 28 A 482 SER ALA VAL TYR ASP ILE SER THR GLY TYR THR ASP ASP SEQRES 29 A 482 ILE ALA ALA ASN GLU LEU GLN ASP THR TYR ARG ASP LEU SEQRES 30 A 482 GLU ILE MET ASP LYS LEU LEU SER GLY SER MET PHE VAL SEQRES 31 A 482 ASP ILE ASP ASN ILE ALA VAL MET GLY VAL LEU ASN VAL SEQRES 32 A 482 ASP THR ASP TYR ILE ALA ALA CYS LYS GLU LYS LEU THR SEQRES 33 A 482 ASN GLU PHE ALA ASP LEU PHE ALA ALA ASN SER MET THR SEQRES 34 A 482 VAL ASN ARG ALA ILE MET ALA LYS ILE LEU SER ASN ILE SEQRES 35 A 482 PRO VAL PHE PHE ASN THR THR ASP GLU ILE ARG GLU TYR SEQRES 36 A 482 VAL ASN GLY SER LEU SER ARG CYS ARG GLU LYS SER GLU SEQRES 37 A 482 LEU LEU ALA ASP TYR ILE VAL ILE LYS GLN MET MET GLU SEQRES 38 A 482 GLU SEQRES 1 B 482 GLN GLY ILE ASP PRO PHE THR MET TYR ASN GLU GLU LYS SEQRES 2 B 482 LYS LEU ILE THR ASP ILE GLN ARG LYS LYS ASP LEU ASP SEQRES 3 B 482 ARG ASN LEU ALA LEU PHE ALA GLY VAL ALA SER LYS ALA SEQRES 4 B 482 ASN TYR GLU TYR ALA CYS HIS LYS PHE THR LEU ASN TYR SEQRES 5 B 482 LEU THR LEU LYS ASP MET HIS MET ASP GLY ASP VAL PRO SEQRES 6 B 482 ASP ASP PRO TYR ILE ALA GLN CYS GLN ALA VAL ILE ASP SEQRES 7 B 482 LYS LEU ILE GLY ASP PHE VAL VAL GLY ASP LYS THR VAL SEQRES 8 B 482 CYS GLU ASP ALA ASP MET LYS LEU ILE SER ASP VAL ARG SEQRES 9 B 482 ASN THR ILE THR ALA LYS MET LYS VAL LEU THR SER TYR SEQRES 10 B 482 THR ASP ALA PHE GLU MET TYR GLU TYR ILE LEU ASN ARG SEQRES 11 B 482 LYS GLU TYR SER TYR SER GLU ASN VAL ASP GLU GLU ILE SEQRES 12 B 482 GLN LYS GLU LEU LYS GLU LEU ASP GLU ALA GLY VAL SER SEQRES 13 B 482 ASP PHE ALA GLU GLU ILE TYR ARG PHE VAL PHE ALA ASP SEQRES 14 B 482 GLN ASP LYS VAL ALA ILE ASN SER LYS LEU GLN SER ILE SEQRES 15 B 482 ILE GLY GLN LEU PRO ILE ARG MET THR LYS ASN ARG PHE SEQRES 16 B 482 TYR ASP ILE LEU GLY GLU THR LEU ASP ILE TYR ASN GLY SEQRES 17 B 482 VAL GLU LYS GLU SER LEU ASP GLN PHE ILE GLU MET ILE SEQRES 18 B 482 GLU ASN THR ALA LEU ILE ARG LEU PRO GLU GLY PHE GLU SEQRES 19 B 482 THR GLU TYR HIS GLU LEU HIS GLU ALA LEU GLU VAL LEU SEQRES 20 B 482 LYS THR GLY ASP TYR THR ALA LEU ASP TYR ASP GLY TYR SEQRES 21 B 482 ARG LYS LEU THR ASP VAL LEU ASP ARG SER ALA ALA PHE SEQRES 22 B 482 LEU ASN SER VAL VAL THR GLU TYR MET LEU ILE ILE GLU SEQRES 23 B 482 LEU VAL ASN ASP LEU TYR VAL MET MET LEU ALA LEU ASP SEQRES 24 B 482 SER LYS LYS GLY VAL SER GLU SER CYS LYS LYS ALA MET SEQRES 25 B 482 THR VAL ILE GLU LYS ALA VAL ALA ASP ASP GLY GLU HIS SEQRES 26 B 482 LEU GLU ASP VAL TYR ALA LEU LEU ASP ASP ILE VAL GLY SEQRES 27 B 482 GLU GLN GLU LEU ALA GLY GLU HIS LYS VAL MET LEU GLU SEQRES 28 B 482 SER ALA VAL TYR ASP ILE SER THR GLY TYR THR ASP ASP SEQRES 29 B 482 ILE ALA ALA ASN GLU LEU GLN ASP THR TYR ARG ASP LEU SEQRES 30 B 482 GLU ILE MET ASP LYS LEU LEU SER GLY SER MET PHE VAL SEQRES 31 B 482 ASP ILE ASP ASN ILE ALA VAL MET GLY VAL LEU ASN VAL SEQRES 32 B 482 ASP THR ASP TYR ILE ALA ALA CYS LYS GLU LYS LEU THR SEQRES 33 B 482 ASN GLU PHE ALA ASP LEU PHE ALA ALA ASN SER MET THR SEQRES 34 B 482 VAL ASN ARG ALA ILE MET ALA LYS ILE LEU SER ASN ILE SEQRES 35 B 482 PRO VAL PHE PHE ASN THR THR ASP GLU ILE ARG GLU TYR SEQRES 36 B 482 VAL ASN GLY SER LEU SER ARG CYS ARG GLU LYS SER GLU SEQRES 37 B 482 LEU LEU ALA ASP TYR ILE VAL ILE LYS GLN MET MET GLU SEQRES 38 B 482 GLU HET ACT A 501 4 HET EDO A 502 4 HET FMT A 503 3 HET FMT A 504 3 HET CL A 505 1 HET CL A 506 1 HET CL A 507 1 HET EDO A 508 4 HET EDO A 509 4 HET MN A 510 1 HET MN A 511 1 HET MN A 512 1 HET MN A 513 1 HET EDO B 501 4 HET ACT B 502 4 HET SO4 B 503 10 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETNAM CL CHLORIDE ION HETNAM MN MANGANESE (II) ION HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 5 FMT 2(C H2 O2) FORMUL 7 CL 3(CL 1-) FORMUL 12 MN 4(MN 2+) FORMUL 18 SO4 O4 S 2- FORMUL 19 HOH *329(H2 O) HELIX 1 AA1 PHE A -1 ARG A 14 1 16 HELIX 2 AA2 ASP A 17 HIS A 52 1 36 HELIX 3 AA3 PRO A 61 VAL A 78 1 18 HELIX 4 AA4 GLU A 86 ARG A 123 1 38 HELIX 5 AA5 LYS A 124 VAL A 132 5 9 HELIX 6 AA6 ASP A 133 LEU A 143 1 11 HELIX 7 AA7 ASP A 144 PHE A 160 1 17 HELIX 8 AA8 ASP A 164 GLY A 177 1 14 HELIX 9 AA9 THR A 184 ASP A 197 1 14 HELIX 10 AB1 ILE A 198 ASN A 200 5 3 HELIX 11 AB2 GLU A 203 ALA A 218 1 16 HELIX 12 AB3 TYR A 230 THR A 242 1 13 HELIX 13 AB4 ASP A 249 ALA A 290 1 42 HELIX 14 AB5 LEU A 291 VAL A 297 5 7 HELIX 15 AB6 SER A 298 ASP A 314 1 17 HELIX 16 AB7 LEU A 319 ILE A 329 1 11 HELIX 17 AB8 GLY A 331 TYR A 354 1 24 HELIX 18 AB9 TYR A 354 ASN A 361 1 8 HELIX 19 AC1 LEU A 363 SER A 378 1 16 HELIX 20 AC2 ASP A 397 ALA A 418 1 22 HELIX 21 AC3 SER A 420 SER A 433 1 14 HELIX 22 AC4 THR A 441 ARG A 455 1 15 HELIX 23 AC5 GLU A 458 MET A 473 1 16 HELIX 24 AC6 PRO B -2 ARG B 14 1 17 HELIX 25 AC7 ASP B 17 MET B 53 1 37 HELIX 26 AC8 PRO B 61 VAL B 78 1 18 HELIX 27 AC9 GLU B 86 ARG B 123 1 38 HELIX 28 AD1 LYS B 124 VAL B 132 5 9 HELIX 29 AD2 ASP B 133 PHE B 160 1 28 HELIX 30 AD3 ASP B 164 GLY B 177 1 14 HELIX 31 AD4 THR B 184 ASP B 197 1 14 HELIX 32 AD5 ILE B 198 ASN B 200 5 3 HELIX 33 AD6 GLU B 203 ALA B 218 1 16 HELIX 34 AD7 TYR B 230 THR B 242 1 13 HELIX 35 AD8 ASP B 249 ALA B 290 1 42 HELIX 36 AD9 LEU B 291 VAL B 297 5 7 HELIX 37 AE1 SER B 298 ASP B 314 1 17 HELIX 38 AE2 HIS B 318 ILE B 329 1 12 HELIX 39 AE3 GLY B 331 TYR B 354 1 24 HELIX 40 AE4 TYR B 354 ASN B 361 1 8 HELIX 41 AE5 LEU B 363 LEU B 377 1 15 HELIX 42 AE6 ASP B 397 ALA B 418 1 22 HELIX 43 AE7 SER B 420 SER B 433 1 14 HELIX 44 AE8 THR B 441 ARG B 455 1 15 HELIX 45 AE9 GLU B 458 MET B 473 1 16 LINK OD1 ASP A 397 MN MN A 513 1555 1555 2.42 LINK OD1 ASN A 440 MN MN A 512 1555 1555 2.43 LINK MN MN A 511 O HOH A 659 1555 1555 2.76 LINK MN MN A 512 O HOH A 642 1555 1555 2.56 LINK MN MN A 512 O HOH A 670 1555 1555 2.61 LINK MN MN A 512 O HOH A 720 1555 1555 2.67 LINK MN MN A 512 OD1 ASP B 397 1455 1555 2.46 LINK MN MN A 512 O HOH B 714 1555 1655 2.24 LINK MN MN A 513 OD1 ASN B 440 1455 1555 2.33 LINK MN MN A 513 O HOH B 603 1555 1655 2.72 LINK MN MN A 513 O HOH B 615 1555 1655 2.51 LINK MN MN A 513 O HOH B 624 1555 1655 2.55 CRYST1 79.349 102.543 142.143 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012603 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009752 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007035 0.00000 MTRIX1 1 -0.998443 0.049623 0.025480 28.15895 1 MTRIX2 1 0.041435 0.353932 0.934353 -53.41389 1 MTRIX3 1 0.037347 0.933954 -0.355437 76.58359 1 CONECT 3196 7632 CONECT 3531 7631 CONECT 7604 7605 7606 7607 CONECT 7605 7604 CONECT 7606 7604 CONECT 7607 7604 CONECT 7608 7609 7610 CONECT 7609 7608 CONECT 7610 7608 7611 CONECT 7611 7610 CONECT 7612 7613 7614 CONECT 7613 7612 CONECT 7614 7612 CONECT 7615 7616 7617 CONECT 7616 7615 CONECT 7617 7615 CONECT 7621 7622 7623 CONECT 7622 7621 CONECT 7623 7621 7624 CONECT 7624 7623 CONECT 7625 7626 7627 CONECT 7626 7625 CONECT 7627 7625 7628 CONECT 7628 7627 CONECT 7630 7709 CONECT 7631 3531 7692 7720 7770 CONECT 7632 3196 CONECT 7633 7634 7635 CONECT 7634 7633 CONECT 7635 7633 7636 CONECT 7636 7635 CONECT 7637 7638 7639 7640 CONECT 7638 7637 CONECT 7639 7637 CONECT 7640 7637 CONECT 7641 7643 7645 7647 7649 CONECT 7642 7644 7646 7648 7650 CONECT 7643 7641 CONECT 7644 7642 CONECT 7645 7641 CONECT 7646 7642 CONECT 7647 7641 CONECT 7648 7642 CONECT 7649 7641 CONECT 7650 7642 CONECT 7692 7631 CONECT 7709 7630 CONECT 7720 7631 CONECT 7770 7631 MASTER 457 0 16 45 0 0 0 9 7929 2 49 76 END