HEADER TOXIN 18-DEC-25 9TPF TITLE THE STRUCTURE OF THE ORTHORHOMBIC CRYSTAL FORM OF THE TYPE II RIBOSOME TITLE 2 INACTIVATING PROTEIN FROM WINTER ACONITE ERANTHIS HYEMALIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-GLYCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: LECTIN; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERANTHIS HYEMALIS; SOURCE 3 ORGANISM_TAXID: 37492; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: ERANTHIS HYEMALIS; SOURCE 6 ORGANISM_TAXID: 37492 KEYWDS RIBOSOME INACTIVATING PROTEIN N-GLYCOSIDASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR J.B.COOPER,R.A.PALMER REVDAT 1 21-JAN-26 9TPF 0 JRNL AUTH M.-T.MCCONNELL,R.C.TALBERT,J.C.LEE,D.R.LISGARTEN, JRNL AUTH 2 J.LISGARTEN,E.BERTOLO,S.C.HARVEY,C.W.LEVY,E.D.LOWE, JRNL AUTH 3 J.B.COOPER,C.NAYLOR,R.QUIROZ,R.BORGES,S.M.PRINCE,R.A.PALMER JRNL TITL THE STRUCTURE OF THE TYPE II RIBOSOME INACTIVATING PROTEIN JRNL TITL 2 FROM WINTER ACONITE ERANTHIS HYEMALIS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SERVALCAT 0.4.105 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 69469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3452 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4406 REMARK 3 BIN R VALUE (WORKING SET) : 0.3606 REMARK 3 BIN FREE R VALUE : 0.4039 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 203 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97457 REMARK 3 B22 (A**2) : -16.04594 REMARK 3 B33 (A**2) : 15.07137 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9TPF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-25. REMARK 100 THE DEPOSITION ID IS D_1292153110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72825 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 67.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 2.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTAL WAS GROWN AT 4 DEGREES C REMARK 280 IN PACT CONDITION B12 (0.01 M ZINC CHLORIDE, 0.1 M MES PH 6, 20 % REMARK 280 PEG 6000)., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.29450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.16950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.73500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.16950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.29450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.73500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG A 301 C1 NAG A 302 1.61 REMARK 500 ND2 ASN A 12 C1 NAG A 301 1.64 REMARK 500 ND2 ASN B 122 C1 NAG B 303 1.76 REMARK 500 O4 NAG A 302 C1 MAN A 303 1.82 REMARK 500 O4 NAG B 303 C1 NAG B 304 1.83 REMARK 500 O3 NAG A 301 C1 FUC A 304 2.07 REMARK 500 O HOH B 612 O HOH B 641 2.18 REMARK 500 O HOH A 468 O HOH A 563 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 166 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 LEU B 216 CB - CG - CD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 MET B 232 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 MET B 241 CG - SD - CE ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 8 163.36 81.70 REMARK 500 ASN A 44 80.88 -66.74 REMARK 500 VAL A 47 -35.97 -35.98 REMARK 500 SER A 140 51.25 33.88 REMARK 500 VAL A 152 -70.76 -110.95 REMARK 500 ASN A 172 57.58 38.89 REMARK 500 ASP B 186 84.99 -156.52 REMARK 500 GLN B 208 14.56 -142.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 206 0.13 SIDE CHAIN REMARK 500 ARG B 23 0.07 SIDE CHAIN REMARK 500 ARG B 146 0.08 SIDE CHAIN REMARK 500 ARG B 214 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 699 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 700 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 701 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH A 702 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 703 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 704 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A 705 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 706 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A 707 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A 708 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A 709 DISTANCE = 7.10 ANGSTROMS REMARK 525 HOH A 710 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A 711 DISTANCE = 7.46 ANGSTROMS REMARK 525 HOH A 712 DISTANCE = 7.64 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 7.74 ANGSTROMS REMARK 525 HOH A 714 DISTANCE = 8.53 ANGSTROMS REMARK 525 HOH A 715 DISTANCE = 8.55 ANGSTROMS REMARK 525 HOH A 716 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH A 717 DISTANCE = 9.27 ANGSTROMS REMARK 525 HOH A 718 DISTANCE = 10.33 ANGSTROMS REMARK 525 HOH A 719 DISTANCE = 10.75 ANGSTROMS REMARK 525 HOH A 720 DISTANCE = 15.39 ANGSTROMS REMARK 525 HOH B 734 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B 735 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH B 736 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 737 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH B 738 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH B 739 DISTANCE = 6.53 ANGSTROMS REMARK 525 HOH B 740 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 741 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B 742 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 743 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH B 744 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B 745 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH B 746 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH B 747 DISTANCE = 7.88 ANGSTROMS REMARK 525 HOH B 748 DISTANCE = 7.96 ANGSTROMS REMARK 525 HOH B 749 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH B 750 DISTANCE = 8.06 ANGSTROMS REMARK 525 HOH B 751 DISTANCE = 8.35 ANGSTROMS REMARK 525 HOH B 752 DISTANCE = 8.84 ANGSTROMS REMARK 525 HOH B 753 DISTANCE = 9.37 ANGSTROMS REMARK 525 HOH B 754 DISTANCE = 9.64 ANGSTROMS REMARK 525 HOH B 755 DISTANCE = 10.74 ANGSTROMS REMARK 525 HOH B 756 DISTANCE = 11.00 ANGSTROMS REMARK 525 HOH B 757 DISTANCE = 11.02 ANGSTROMS REMARK 525 HOH B 758 DISTANCE = 11.52 ANGSTROMS REMARK 525 HOH B 759 DISTANCE = 12.04 ANGSTROMS REMARK 525 HOH B 760 DISTANCE = 16.68 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 301 REMARK 610 NAG A 302 REMARK 610 MAN A 303 REMARK 610 FUC A 304 REMARK 610 NAG B 303 REMARK 610 NAG B 304 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 4 ND1 REMARK 620 2 ASP A 55 OD2 119.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 163 ND1 REMARK 620 2 GLU B 147 OE1 102.1 REMARK 620 3 HOH B 519 O 103.7 101.0 REMARK 620 N 1 2 DBREF 9TPF A 1 241 PDB 9TPF 9TPF 1 241 DBREF 9TPF B 0 261 PDB 9TPF 9TPF 0 261 SEQRES 1 A 241 ALA LYS ILE HIS TYR LYS ASN SER ALA ASN PRO ASN ILE SEQRES 2 A 241 THR ALA TYR THR GLN PHE ILE THR ALA LEU ARG ASP ARG SEQRES 3 A 241 LEU SER SER GLY SER HIS VAL HIS ASP PHE PRO GLN LEU SEQRES 4 A 241 ARG GLN PRO SER ASN LEU PRO VAL ALA ASN ARG PHE ILE SEQRES 5 A 241 LEU VAL ASP LEU GLU ASN GLY ALA GLY HIS THR ILE THR SEQRES 6 A 241 VAL PRO ILE ASP VAL PHE ASN ALA TYR VAL VAL GLY TYR SEQRES 7 A 241 LEU VAL GLY ASP THR PHE ASP TYR PHE THR ASP ALA PRO SEQRES 8 A 241 PRO GLU ALA LEU ASP ILE PHE PRO SER ALA THR SER ARG SEQRES 9 A 241 SER LEU GLY PHE GLY GLY ASN TYR GLY ASN LEU GLY SER SEQRES 10 A 241 ARG GLU THR GLN GLU LEU GLY HIS ALA ALA LEU ASN ASP SEQRES 11 A 241 ALA ILE ASP ALA LEU PHE TYR SER TYR SER GLN ARG THR SEQRES 12 A 241 SER PHE LEU VAL ILE ILE GLN MET VAL SER GLU ALA ALA SEQRES 13 A 241 ARG ILE ARG TYR ILE GLU HIS LEU VAL ARG ARG SER MET SEQRES 14 A 241 ILE SER ASN ALA ASN PHE LEU PRO ASP PRO ARG ALA LEU SEQRES 15 A 241 SER LEU GLU ASN SER TRP ASP PRO LEU SER THR GLN ILE SEQRES 16 A 241 GLN LEU SER GLY SER ARG GLY VAL PHE ILE ARG PRO VAL SEQRES 17 A 241 TRP ILE GLN ASN ILE SER TYR GLN VAL VAL ILE ILE ASN SEQRES 18 A 241 ASN VAL GLU GLU VAL LEU ARG GLY ALA ALA LEU ALA LEU SEQRES 19 A 241 LEU LEU PHE ARG CYS THR ALA SEQRES 1 B 262 ALA SER CYS PRO SER SER GLU THR VAL THR ARG SER ILE SEQRES 2 B 262 ILE GLY ARG ASP GLN LEU CYS VAL ASP VAL ARG ASP GLY SEQRES 3 B 262 GLN ASN ASN ASP GLY ASN PRO ILE GLN LEU TRP GLN CYS SEQRES 4 B 262 THR GLN GLN GLN ASN GLN ARG TRP THR PHE LYS ASP ASP SEQRES 5 B 262 GLY THR ILE ARG SER LEU GLY LYS CYS LEU THR THR TYR SEQRES 6 B 262 GLY TYR SER ALA GLY ALA TYR ILE MET ILE TYR ASP CYS SEQRES 7 B 262 ASP SER ALA VAL PRO ASP ALA THR VAL TRP ALA LEU SER SEQRES 8 B 262 ASN ASN GLY THR ILE ILE ASN PRO ARG SER GLY LEU ALA SEQRES 9 B 262 LEU THR ALA GLU ASN SER SER PRO GLY THR THR LEU THR SEQRES 10 B 262 VAL GLU THR ASP ILE ASN ALA SER ARG GLN ALA TRP THR SEQRES 11 B 262 VAL GLY GLU TYR THR GLN PRO ALA ILE VAL SER TYR ILE SEQRES 12 B 262 SER GLY PHE ARG GLU MET CYS LEU GLN ALA ASN ASP ASP SEQRES 13 B 262 ASP VAL LEU VAL TRP LEU GLU SER CYS GLU ILE GLY GLN SEQRES 14 B 262 GLN LYS GLN GLN TRP ALA LEU TYR SER ASP SER THR ILE SEQRES 15 B 262 ARG VAL PHE SER ASP PRO SER LEU CYS VAL THR SER SER SEQRES 16 B 262 GLY HIS SER SER SER ASP ILE ILE GLY ILE LEU LYS CYS SEQRES 17 B 262 GLN GLY TRP GLY ASN GLN ARG TRP LEU PHE ARG ALA ASP SEQRES 18 B 262 GLY THR ILE LEU ASN PRO ASN ALA ARG LEU VAL MET ASP SEQRES 19 B 262 VAL ARG GLY SER ASP VAL SER MET ARG GLU ILE ILE LEU SEQRES 20 B 262 TYR GLU PRO THR GLY ASN PRO ASN GLN GLN TRP LEU ALA SEQRES 21 B 262 TYR SER HET NAG A 301 14 HET NAG A 302 14 HET MAN A 303 11 HET FUC A 304 10 HET ZN A 305 1 HET CL A 306 1 HET ZN A 307 1 HET PG4 B 301 13 HET PG4 B 302 13 HET NAG B 303 14 HET NAG B 304 14 HET AH2 B 305 11 HET ZN B 306 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM AH2 1-DEOXY-ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN AH2 1,5-ANHYDROMANNITOL; 1-DEOXY-ALPHA-D-MANNOSE; 1-DEOXY- HETSYN 2 AH2 D-MANNOSE; 1-DEOXY-MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 MAN C6 H12 O6 FORMUL 6 FUC C6 H12 O5 FORMUL 7 ZN 3(ZN 2+) FORMUL 8 CL CL 1- FORMUL 10 PG4 2(C8 H18 O5) FORMUL 14 AH2 C6 H12 O5 FORMUL 16 HOH *680(H2 O) HELIX 1 AA1 ASN A 12 SER A 28 1 17 HELIX 2 AA2 PRO A 46 ARG A 50 1 5 HELIX 3 AA3 PRO A 91 ILE A 97 5 7 HELIX 4 AA4 ASN A 111 GLY A 116 1 6 HELIX 5 AA5 GLY A 124 TYR A 137 1 14 HELIX 6 AA6 SER A 140 ILE A 158 1 19 HELIX 7 AA7 ILE A 158 SER A 171 1 14 HELIX 8 AA8 ASP A 178 SER A 198 1 21 HELIX 9 AA9 GLY A 199 ARG A 201 5 3 HELIX 10 AB1 VAL A 223 ARG A 228 1 6 HELIX 11 AB2 GLY B 14 LEU B 18 5 5 HELIX 12 AB3 ASP B 24 GLN B 26 5 3 HELIX 13 AB4 GLN B 41 ARG B 45 5 5 HELIX 14 AB5 VAL B 81 VAL B 86 5 6 HELIX 15 AB6 ALA B 123 ALA B 127 5 5 HELIX 16 AB7 GLY B 144 MET B 148 5 5 HELIX 17 AB8 GLN B 168 GLN B 171 5 4 HELIX 18 AB9 TRP B 210 ARG B 214 5 5 HELIX 19 AC1 GLY B 236 ARG B 242 5 7 HELIX 20 AC2 ASN B 252 GLN B 256 5 5 SHEET 1 AA1 3 ILE A 3 LYS A 6 0 SHEET 2 AA1 3 PHE A 51 GLU A 57 1 O ASP A 55 N TYR A 5 SHEET 3 AA1 3 THR A 63 ASP A 69 -1 O VAL A 66 N VAL A 54 SHEET 1 AA2 2 HIS A 32 VAL A 33 0 SHEET 2 AA2 2 PHE A 36 PRO A 37 -1 O PHE A 36 N VAL A 33 SHEET 1 AA3 3 GLY A 77 VAL A 80 0 SHEET 2 AA3 3 THR A 83 TYR A 86 -1 O ASP A 85 N TYR A 78 SHEET 3 AA3 3 THR A 102 SER A 105 1 O THR A 102 N PHE A 84 SHEET 1 AA4 2 VAL A 203 GLN A 211 0 SHEET 2 AA4 2 VAL A 217 ASN A 222 -1 O VAL A 218 N ILE A 210 SHEET 1 AA5 6 ILE B 72 TYR B 75 0 SHEET 2 AA5 6 LYS B 59 THR B 63 -1 N CYS B 60 O TYR B 75 SHEET 3 AA5 6 ILE B 54 SER B 56 -1 N SER B 56 O LYS B 59 SHEET 4 AA5 6 TRP B 46 PHE B 48 -1 N THR B 47 O ARG B 55 SHEET 5 AA5 6 THR B 9 ILE B 13 -1 N ARG B 10 O TRP B 46 SHEET 6 AA5 6 THR B 129 GLY B 131 -1 O THR B 129 N ILE B 13 SHEET 1 AA6 2 CYS B 19 VAL B 22 0 SHEET 2 AA6 2 ILE B 33 TRP B 36 -1 O TRP B 36 N CYS B 19 SHEET 1 AA7 4 ALA B 88 LEU B 89 0 SHEET 2 AA7 4 ILE B 95 ASN B 97 -1 O ILE B 96 N ALA B 88 SHEET 3 AA7 4 LEU B 102 THR B 105 -1 O LEU B 104 N ILE B 95 SHEET 4 AA7 4 THR B 116 GLU B 118 -1 O GLU B 118 N ALA B 103 SHEET 1 AA8 2 TYR B 141 SER B 143 0 SHEET 2 AA8 2 LEU B 258 TYR B 260 -1 O TYR B 260 N TYR B 141 SHEET 1 AA9 2 CYS B 149 ALA B 152 0 SHEET 2 AA9 2 VAL B 159 GLU B 162 -1 O GLU B 162 N CYS B 149 SHEET 1 AB1 2 TRP B 173 LEU B 175 0 SHEET 2 AB1 2 ILE B 181 VAL B 183 -1 O ARG B 182 N ALA B 174 SHEET 1 AB2 2 LEU B 189 SER B 193 0 SHEET 2 AB2 2 ILE B 202 LYS B 206 -1 O LEU B 205 N CYS B 190 SHEET 1 AB3 4 LEU B 216 PHE B 217 0 SHEET 2 AB3 4 ILE B 223 ASN B 225 -1 O LEU B 224 N LEU B 216 SHEET 3 AB3 4 LEU B 230 VAL B 234 -1 O LEU B 230 N ASN B 225 SHEET 4 AB3 4 ILE B 244 TYR B 247 -1 O TYR B 247 N VAL B 231 SSBOND 1 CYS A 239 CYS B 2 1555 1555 2.40 SSBOND 2 CYS B 19 CYS B 38 1555 1555 2.10 SSBOND 3 CYS B 60 CYS B 77 1555 1555 2.33 SSBOND 4 CYS B 149 CYS B 164 1555 1555 2.17 SSBOND 5 CYS B 190 CYS B 207 1555 1555 2.23 LINK ND1 HIS A 4 ZN ZN A 307 1555 1555 2.16 LINK OD2 ASP A 55 ZN ZN A 307 1555 1555 2.17 LINK ND1 HIS A 163 ZN ZN A 305 1555 1555 2.00 LINK ZN ZN A 305 OE1 GLU B 147 1555 1555 1.99 LINK ZN ZN A 305 O HOH B 519 1555 1555 2.20 LINK NE2 HIS B 196 ZN ZN B 306 1555 1555 2.61 CRYST1 80.589 95.470 96.339 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012409 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010380 0.00000 CONECT 29 3995 CONECT 447 3995 CONECT 1280 3993 CONECT 1903 1929 CONECT 1929 1903 CONECT 2057 2208 CONECT 2208 2057 CONECT 2390 2522 CONECT 2522 2390 CONECT 3041 3993 CONECT 3056 3175 CONECT 3175 3056 CONECT 3385 3502 CONECT 3425 4061 CONECT 3502 3385 CONECT 3944 3945 3955 CONECT 3945 3944 3946 3952 CONECT 3946 3945 3947 3953 CONECT 3947 3946 3948 3954 CONECT 3948 3947 3949 3955 CONECT 3949 3948 3956 CONECT 3950 3951 3952 3957 CONECT 3951 3950 CONECT 3952 3945 3950 CONECT 3953 3946 CONECT 3954 3947 CONECT 3955 3944 3948 CONECT 3956 3949 CONECT 3957 3950 CONECT 3958 3959 3969 CONECT 3959 3958 3960 3966 CONECT 3960 3959 3961 3967 CONECT 3961 3960 3962 3968 CONECT 3962 3961 3963 3969 CONECT 3963 3962 3970 CONECT 3964 3965 3966 3971 CONECT 3965 3964 CONECT 3966 3959 3964 CONECT 3967 3960 CONECT 3968 3961 CONECT 3969 3958 3962 CONECT 3970 3963 CONECT 3971 3964 CONECT 3972 3973 3981 CONECT 3973 3972 3974 3978 CONECT 3974 3973 3975 3979 CONECT 3975 3974 3976 3980 CONECT 3976 3975 3977 3981 CONECT 3977 3976 3982 CONECT 3978 3973 CONECT 3979 3974 CONECT 3980 3975 CONECT 3981 3972 3976 CONECT 3982 3977 CONECT 3983 3984 3992 CONECT 3984 3983 3985 3989 CONECT 3985 3984 3986 3990 CONECT 3986 3985 3987 3991 CONECT 3987 3986 3988 3992 CONECT 3988 3987 CONECT 3989 3984 CONECT 3990 3985 CONECT 3991 3986 CONECT 3992 3983 3987 CONECT 3993 1280 3041 4500 CONECT 3995 29 447 CONECT 3996 3997 CONECT 3997 3996 3998 CONECT 3998 3997 3999 CONECT 3999 3998 4000 CONECT 4000 3999 4001 CONECT 4001 4000 4002 CONECT 4002 4001 4003 CONECT 4003 4002 4004 CONECT 4004 4003 4005 CONECT 4005 4004 4006 CONECT 4006 4005 4007 CONECT 4007 4006 4008 CONECT 4008 4007 CONECT 4009 4010 CONECT 4010 4009 4011 CONECT 4011 4010 4012 CONECT 4012 4011 4013 CONECT 4013 4012 4014 CONECT 4014 4013 4015 CONECT 4015 4014 4016 CONECT 4016 4015 4017 CONECT 4017 4016 4018 CONECT 4018 4017 4019 CONECT 4019 4018 4020 CONECT 4020 4019 4021 CONECT 4021 4020 CONECT 4022 4023 4033 CONECT 4023 4022 4024 4030 CONECT 4024 4023 4025 4031 CONECT 4025 4024 4026 4032 CONECT 4026 4025 4027 4033 CONECT 4027 4026 4034 CONECT 4028 4029 4030 4035 CONECT 4029 4028 CONECT 4030 4023 4028 CONECT 4031 4024 CONECT 4032 4025 CONECT 4033 4022 4026 CONECT 4034 4027 CONECT 4035 4028 CONECT 4036 4037 4047 CONECT 4037 4036 4038 4044 CONECT 4038 4037 4039 4045 CONECT 4039 4038 4040 4046 CONECT 4040 4039 4041 4047 CONECT 4041 4040 4048 CONECT 4042 4043 4044 4049 CONECT 4043 4042 CONECT 4044 4037 4042 CONECT 4045 4038 CONECT 4046 4039 CONECT 4047 4036 4040 CONECT 4048 4041 CONECT 4049 4042 CONECT 4050 4057 CONECT 4051 4052 4053 4057 CONECT 4052 4051 4054 4055 CONECT 4053 4051 CONECT 4054 4052 4056 CONECT 4055 4052 4060 CONECT 4056 4054 CONECT 4057 4050 4051 4058 CONECT 4058 4057 4059 4060 CONECT 4059 4058 CONECT 4060 4055 4058 CONECT 4061 3425 CONECT 4500 3993 MASTER 390 0 13 20 34 0 0 6 4717 2 133 40 END