HEADER OXIDOREDUCTASE 18-MAR-25 9U3F TITLE MONOMERIC SARCOSINE OXIDASE FROM BACILLUS SP. (SOXB) Y254G MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: MONOMERIC SARCOSINE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MSOX; COMPND 5 EC: 1.5.3.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. B-0618; SOURCE 3 ORGANISM_TAXID: 69000; SOURCE 4 GENE: SOXA, SOX; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARCOSINE OXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,Y.NAKAJIMA,M.KUROBE,T.NAKAMURA,T.HIMIYAMA,Y.NISHIYA REVDAT 2 19-NOV-25 9U3F 1 JRNL REVDAT 1 24-SEP-25 9U3F 0 JRNL AUTH Y.ZHANG,Y.NAKAJIMA,M.KUROBE,T.NAKAMURA,T.HIMIYAMA,Y.NISHIYA JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF BACILLUS SARCOSINE JRNL TITL 2 OXIDASE AND ITS ACTIVITY TOWARD CYCLIC IMINO ACIDS. JRNL REF FEBS OPEN BIO V. 15 1814 2025 JRNL REFN ESSN 2211-5463 JRNL PMID 40932061 JRNL DOI 10.1002/2211-5463.70119 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 128280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.292 REMARK 3 FREE R VALUE TEST SET COUNT : 6788 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8959 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 521 REMARK 3 BIN FREE R VALUE : 0.2260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5906 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 645 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00300 REMARK 3 B22 (A**2) : 0.00300 REMARK 3 B33 (A**2) : -0.00100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.191 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6186 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5629 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8395 ; 1.872 ; 1.831 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13009 ; 0.654 ; 1.748 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 757 ; 7.178 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ; 7.436 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 977 ;11.862 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 904 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7225 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1393 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1038 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 35 ; 0.160 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2976 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 421 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3037 ; 1.320 ; 1.331 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3037 ; 1.319 ; 1.331 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3791 ; 1.939 ; 2.388 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3792 ; 1.943 ; 2.390 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3149 ; 2.326 ; 1.545 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3150 ; 2.327 ; 1.546 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4604 ; 3.480 ; 2.733 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4605 ; 3.480 ; 2.733 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9U3F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 128302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 42.364 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1EL5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 100 MM TRIS REMARK 280 -HCL BUFFER PH8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.83650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 SER A 383 REMARK 465 LEU A 384 REMARK 465 GLN A 385 REMARK 465 LYS A 386 REMARK 465 THR A 387 REMARK 465 THR A 388 REMARK 465 ILE A 389 REMARK 465 GLY A 390 REMARK 465 SER A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 HIS A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 SER B 1 REMARK 465 ALA B 188 REMARK 465 ASN B 189 REMARK 465 GLY B 190 REMARK 465 LEU B 384 REMARK 465 GLN B 385 REMARK 465 LYS B 386 REMARK 465 THR B 387 REMARK 465 THR B 388 REMARK 465 ILE B 389 REMARK 465 GLY B 390 REMARK 465 SER B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 HIS B 395 REMARK 465 HIS B 396 REMARK 465 HIS B 397 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 110 CD OE1 OE2 REMARK 470 GLU A 289 CG CD OE1 OE2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 LYS B 109 CG CD CE NZ REMARK 470 GLU B 110 CD OE1 OE2 REMARK 470 ASP B 121 CG OD1 OD2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 60 O HOH A 501 2.02 REMARK 500 O HOH B 640 O HOH B 697 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 49 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 126 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TYR B 268 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG B 282 CD - NE - CZ ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG B 282 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG B 282 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 48.97 -101.80 REMARK 500 PHE A 35 -145.42 -129.59 REMARK 500 ASP A 47 -50.32 76.77 REMARK 500 HIS A 345 23.60 -142.82 REMARK 500 ALA B 11 54.42 -103.06 REMARK 500 PHE B 35 -146.71 -126.57 REMARK 500 ASP B 47 -52.05 79.44 REMARK 500 HIS B 345 24.29 -144.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 157 0.10 SIDE CHAIN REMARK 500 ARG B 163 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9U3F A 1 389 UNP P40859 MSOX_BACB0 2 390 DBREF 9U3F B 1 389 UNP P40859 MSOX_BACB0 2 390 SEQADV 9U3F GLY A 254 UNP P40859 TYR 255 ENGINEERED MUTATION SEQADV 9U3F GLY A 390 UNP P40859 EXPRESSION TAG SEQADV 9U3F SER A 391 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS A 392 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS A 393 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS A 394 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS A 395 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS A 396 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS A 397 UNP P40859 EXPRESSION TAG SEQADV 9U3F GLY B 254 UNP P40859 TYR 255 ENGINEERED MUTATION SEQADV 9U3F GLY B 390 UNP P40859 EXPRESSION TAG SEQADV 9U3F SER B 391 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS B 392 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS B 393 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS B 394 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS B 395 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS B 396 UNP P40859 EXPRESSION TAG SEQADV 9U3F HIS B 397 UNP P40859 EXPRESSION TAG SEQRES 1 A 397 SER THR HIS PHE ASP VAL ILE VAL VAL GLY ALA GLY SER SEQRES 2 A 397 MET GLY MET ALA ALA GLY TYR GLN LEU ALA LYS GLN GLY SEQRES 3 A 397 VAL LYS THR LEU LEU VAL ASP ALA PHE ASP PRO PRO HIS SEQRES 4 A 397 THR ASN GLY SER HIS HIS GLY ASP THR ARG ILE ILE ARG SEQRES 5 A 397 HIS ALA TYR GLY GLU GLY ARG GLU TYR VAL PRO LEU ALA SEQRES 6 A 397 LEU ARG SER GLN GLU LEU TRP TYR GLU LEU GLU LYS GLU SEQRES 7 A 397 THR HIS HIS LYS ILE PHE THR LYS THR GLY VAL LEU VAL SEQRES 8 A 397 PHE GLY PRO LYS GLY GLU SER ALA PHE VAL ALA GLU THR SEQRES 9 A 397 MET GLU ALA ALA LYS GLU HIS SER LEU THR VAL ASP LEU SEQRES 10 A 397 LEU GLU GLY ASP GLU ILE ASN LYS ARG TRP PRO GLY ILE SEQRES 11 A 397 THR VAL PRO GLU ASN TYR ASN ALA ILE PHE GLU PRO ASN SEQRES 12 A 397 SER GLY VAL LEU PHE SER GLU ASN CYS ILE ARG ALA TYR SEQRES 13 A 397 ARG GLU LEU ALA GLU ALA ARG GLY ALA LYS VAL LEU THR SEQRES 14 A 397 HIS THR ARG VAL GLU ASP PHE ASP ILE SER PRO ASP SER SEQRES 15 A 397 VAL LYS ILE GLU THR ALA ASN GLY SER TYR THR ALA ASP SEQRES 16 A 397 LYS LEU ILE VAL SER MET GLY ALA TRP ASN SER LYS LEU SEQRES 17 A 397 LEU SER LYS LEU ASN LEU ASP ILE PRO LEU GLN PRO TYR SEQRES 18 A 397 ARG GLN VAL VAL GLY PHE PHE GLU SER ASP GLU SER LYS SEQRES 19 A 397 TYR SER ASN ASP ILE ASP PHE PRO GLY PHE MET VAL GLU SEQRES 20 A 397 VAL PRO ASN GLY ILE TYR GLY GLY PHE PRO SER PHE GLY SEQRES 21 A 397 GLY CYS GLY LEU LYS LEU GLY TYR HIS THR PHE GLY GLN SEQRES 22 A 397 LYS ILE ASP PRO ASP THR ILE ASN ARG GLU PHE GLY VAL SEQRES 23 A 397 TYR PRO GLU ASP GLU SER ASN LEU ARG ALA PHE LEU GLU SEQRES 24 A 397 GLU TYR MET PRO GLY ALA ASN GLY GLU LEU LYS ARG GLY SEQRES 25 A 397 ALA VAL CYS MET TYR THR LYS THR LEU ASP GLU HIS PHE SEQRES 26 A 397 ILE ILE ASP LEU HIS PRO GLU HIS SER ASN VAL VAL ILE SEQRES 27 A 397 ALA ALA GLY PHE SER GLY HIS GLY PHE LYS PHE SER SER SEQRES 28 A 397 GLY VAL GLY GLU VAL LEU SER GLN LEU ALA LEU THR GLY SEQRES 29 A 397 LYS THR GLU HIS ASP ILE SER ILE PHE SER ILE ASN ARG SEQRES 30 A 397 PRO ALA LEU LYS GLU SER LEU GLN LYS THR THR ILE GLY SEQRES 31 A 397 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 397 SER THR HIS PHE ASP VAL ILE VAL VAL GLY ALA GLY SER SEQRES 2 B 397 MET GLY MET ALA ALA GLY TYR GLN LEU ALA LYS GLN GLY SEQRES 3 B 397 VAL LYS THR LEU LEU VAL ASP ALA PHE ASP PRO PRO HIS SEQRES 4 B 397 THR ASN GLY SER HIS HIS GLY ASP THR ARG ILE ILE ARG SEQRES 5 B 397 HIS ALA TYR GLY GLU GLY ARG GLU TYR VAL PRO LEU ALA SEQRES 6 B 397 LEU ARG SER GLN GLU LEU TRP TYR GLU LEU GLU LYS GLU SEQRES 7 B 397 THR HIS HIS LYS ILE PHE THR LYS THR GLY VAL LEU VAL SEQRES 8 B 397 PHE GLY PRO LYS GLY GLU SER ALA PHE VAL ALA GLU THR SEQRES 9 B 397 MET GLU ALA ALA LYS GLU HIS SER LEU THR VAL ASP LEU SEQRES 10 B 397 LEU GLU GLY ASP GLU ILE ASN LYS ARG TRP PRO GLY ILE SEQRES 11 B 397 THR VAL PRO GLU ASN TYR ASN ALA ILE PHE GLU PRO ASN SEQRES 12 B 397 SER GLY VAL LEU PHE SER GLU ASN CYS ILE ARG ALA TYR SEQRES 13 B 397 ARG GLU LEU ALA GLU ALA ARG GLY ALA LYS VAL LEU THR SEQRES 14 B 397 HIS THR ARG VAL GLU ASP PHE ASP ILE SER PRO ASP SER SEQRES 15 B 397 VAL LYS ILE GLU THR ALA ASN GLY SER TYR THR ALA ASP SEQRES 16 B 397 LYS LEU ILE VAL SER MET GLY ALA TRP ASN SER LYS LEU SEQRES 17 B 397 LEU SER LYS LEU ASN LEU ASP ILE PRO LEU GLN PRO TYR SEQRES 18 B 397 ARG GLN VAL VAL GLY PHE PHE GLU SER ASP GLU SER LYS SEQRES 19 B 397 TYR SER ASN ASP ILE ASP PHE PRO GLY PHE MET VAL GLU SEQRES 20 B 397 VAL PRO ASN GLY ILE TYR GLY GLY PHE PRO SER PHE GLY SEQRES 21 B 397 GLY CYS GLY LEU LYS LEU GLY TYR HIS THR PHE GLY GLN SEQRES 22 B 397 LYS ILE ASP PRO ASP THR ILE ASN ARG GLU PHE GLY VAL SEQRES 23 B 397 TYR PRO GLU ASP GLU SER ASN LEU ARG ALA PHE LEU GLU SEQRES 24 B 397 GLU TYR MET PRO GLY ALA ASN GLY GLU LEU LYS ARG GLY SEQRES 25 B 397 ALA VAL CYS MET TYR THR LYS THR LEU ASP GLU HIS PHE SEQRES 26 B 397 ILE ILE ASP LEU HIS PRO GLU HIS SER ASN VAL VAL ILE SEQRES 27 B 397 ALA ALA GLY PHE SER GLY HIS GLY PHE LYS PHE SER SER SEQRES 28 B 397 GLY VAL GLY GLU VAL LEU SER GLN LEU ALA LEU THR GLY SEQRES 29 B 397 LYS THR GLU HIS ASP ILE SER ILE PHE SER ILE ASN ARG SEQRES 30 B 397 PRO ALA LEU LYS GLU SER LEU GLN LYS THR THR ILE GLY SEQRES 31 B 397 SER HIS HIS HIS HIS HIS HIS HET FAD A 401 53 HET GOL A 402 6 HET CL A 403 1 HET FAD B 401 53 HET GOL B 402 6 HET CL B 403 1 HET GOL B 404 6 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 CL 2(CL 1-) FORMUL 10 HOH *645(H2 O) HELIX 1 AA1 GLY A 12 LYS A 24 1 13 HELIX 2 AA2 GLY A 58 GLU A 60 5 3 HELIX 3 AA3 TYR A 61 THR A 79 1 19 HELIX 4 AA4 SER A 98 HIS A 111 1 14 HELIX 5 AA5 GLY A 120 TRP A 127 1 8 HELIX 6 AA6 SER A 149 ARG A 163 1 15 HELIX 7 AA7 MET A 201 ALA A 203 5 3 HELIX 8 AA8 TRP A 204 LEU A 209 1 6 HELIX 9 AA9 SER A 210 ASN A 213 5 4 HELIX 10 AB1 ASP A 231 SER A 236 1 6 HELIX 11 AB2 ASN A 237 ASP A 240 5 4 HELIX 12 AB3 PRO A 288 MET A 302 1 15 HELIX 13 AB4 PRO A 303 ASN A 306 5 4 HELIX 14 AB5 GLY A 346 LYS A 348 5 3 HELIX 15 AB6 PHE A 349 GLY A 364 1 16 HELIX 16 AB7 ILE A 370 SER A 374 5 5 HELIX 17 AB8 ARG A 377 LYS A 381 5 5 HELIX 18 AB9 GLY B 12 GLN B 25 1 14 HELIX 19 AC1 GLY B 58 GLU B 60 5 3 HELIX 20 AC2 TYR B 61 THR B 79 1 19 HELIX 21 AC3 SER B 98 HIS B 111 1 14 HELIX 22 AC4 GLY B 120 TRP B 127 1 8 HELIX 23 AC5 SER B 149 ARG B 163 1 15 HELIX 24 AC6 MET B 201 ALA B 203 5 3 HELIX 25 AC7 TRP B 204 LEU B 209 1 6 HELIX 26 AC8 SER B 210 ASN B 213 5 4 HELIX 27 AC9 ASP B 231 SER B 236 1 6 HELIX 28 AD1 ASN B 237 ASP B 240 5 4 HELIX 29 AD2 PRO B 288 MET B 302 1 15 HELIX 30 AD3 PRO B 303 ASN B 306 5 4 HELIX 31 AD4 GLY B 346 LYS B 348 5 3 HELIX 32 AD5 PHE B 349 GLY B 364 1 16 HELIX 33 AD6 ILE B 370 SER B 374 5 5 HELIX 34 AD7 ARG B 377 LYS B 381 5 5 SHEET 1 AA1 6 LYS A 166 LEU A 168 0 SHEET 2 AA1 6 THR A 29 VAL A 32 1 N LEU A 31 O LYS A 166 SHEET 3 AA1 6 HIS A 3 VAL A 9 1 N VAL A 8 O LEU A 30 SHEET 4 AA1 6 GLY A 190 VAL A 199 1 O ILE A 198 N VAL A 9 SHEET 5 AA1 6 SER A 182 THR A 187 -1 N ILE A 185 O TYR A 192 SHEET 6 AA1 6 VAL A 173 SER A 179 -1 N GLU A 174 O GLU A 186 SHEET 1 AA2 6 LYS A 166 LEU A 168 0 SHEET 2 AA2 6 THR A 29 VAL A 32 1 N LEU A 31 O LYS A 166 SHEET 3 AA2 6 HIS A 3 VAL A 9 1 N VAL A 8 O LEU A 30 SHEET 4 AA2 6 GLY A 190 VAL A 199 1 O ILE A 198 N VAL A 9 SHEET 5 AA2 6 HIS A 333 ALA A 340 1 O VAL A 337 N LEU A 197 SHEET 6 AA2 6 ILE A 326 HIS A 330 -1 N ASP A 328 O ILE A 338 SHEET 1 AA3 3 THR A 48 ILE A 51 0 SHEET 2 AA3 3 GLY A 145 PHE A 148 -1 O LEU A 147 N ARG A 49 SHEET 3 AA3 3 PHE A 84 THR A 85 -1 N THR A 85 O VAL A 146 SHEET 1 AA4 8 ASP A 116 GLU A 119 0 SHEET 2 AA4 8 TYR A 136 GLU A 141 -1 O PHE A 140 N ASP A 116 SHEET 3 AA4 8 VAL A 89 PRO A 94 -1 N VAL A 89 O GLU A 141 SHEET 4 AA4 8 GLY A 243 VAL A 248 1 O GLY A 243 N LEU A 90 SHEET 5 AA4 8 GLY A 251 PHE A 256 -1 O GLY A 251 N VAL A 248 SHEET 6 AA4 8 LEU A 264 TYR A 268 -1 O GLY A 267 N GLY A 254 SHEET 7 AA4 8 GLN A 219 PHE A 228 -1 N PHE A 228 O LEU A 264 SHEET 8 AA4 8 GLN A 273 LYS A 274 -1 O GLN A 273 N ARG A 222 SHEET 1 AA5 8 ASP A 116 GLU A 119 0 SHEET 2 AA5 8 TYR A 136 GLU A 141 -1 O PHE A 140 N ASP A 116 SHEET 3 AA5 8 VAL A 89 PRO A 94 -1 N VAL A 89 O GLU A 141 SHEET 4 AA5 8 GLY A 243 VAL A 248 1 O GLY A 243 N LEU A 90 SHEET 5 AA5 8 GLY A 251 PHE A 256 -1 O GLY A 251 N VAL A 248 SHEET 6 AA5 8 LEU A 264 TYR A 268 -1 O GLY A 267 N GLY A 254 SHEET 7 AA5 8 GLN A 219 PHE A 228 -1 N PHE A 228 O LEU A 264 SHEET 8 AA5 8 LEU A 309 LYS A 319 -1 O CYS A 315 N GLN A 223 SHEET 1 AA6 6 LYS B 166 LEU B 168 0 SHEET 2 AA6 6 THR B 29 VAL B 32 1 N LEU B 31 O LYS B 166 SHEET 3 AA6 6 HIS B 3 VAL B 9 1 N VAL B 8 O LEU B 30 SHEET 4 AA6 6 TYR B 192 VAL B 199 1 O ILE B 198 N VAL B 9 SHEET 5 AA6 6 SER B 182 ILE B 185 -1 N VAL B 183 O ALA B 194 SHEET 6 AA6 6 PHE B 176 SER B 179 -1 N SER B 179 O SER B 182 SHEET 1 AA7 6 LYS B 166 LEU B 168 0 SHEET 2 AA7 6 THR B 29 VAL B 32 1 N LEU B 31 O LYS B 166 SHEET 3 AA7 6 HIS B 3 VAL B 9 1 N VAL B 8 O LEU B 30 SHEET 4 AA7 6 TYR B 192 VAL B 199 1 O ILE B 198 N VAL B 9 SHEET 5 AA7 6 HIS B 333 ALA B 340 1 O VAL B 337 N VAL B 199 SHEET 6 AA7 6 ILE B 326 HIS B 330 -1 N ASP B 328 O ILE B 338 SHEET 1 AA8 3 THR B 48 ILE B 51 0 SHEET 2 AA8 3 GLY B 145 PHE B 148 -1 O LEU B 147 N ARG B 49 SHEET 3 AA8 3 PHE B 84 THR B 85 -1 N THR B 85 O VAL B 146 SHEET 1 AA9 8 ASP B 116 GLU B 119 0 SHEET 2 AA9 8 TYR B 136 GLU B 141 -1 O PHE B 140 N ASP B 116 SHEET 3 AA9 8 VAL B 89 PRO B 94 -1 N VAL B 89 O GLU B 141 SHEET 4 AA9 8 GLY B 243 VAL B 248 1 O GLY B 243 N LEU B 90 SHEET 5 AA9 8 GLY B 251 PHE B 256 -1 O GLY B 251 N VAL B 248 SHEET 6 AA9 8 LEU B 264 TYR B 268 -1 O GLY B 267 N GLY B 254 SHEET 7 AA9 8 GLN B 219 PHE B 228 -1 N PHE B 228 O LEU B 264 SHEET 8 AA9 8 GLN B 273 LYS B 274 -1 O GLN B 273 N ARG B 222 SHEET 1 AB1 8 ASP B 116 GLU B 119 0 SHEET 2 AB1 8 TYR B 136 GLU B 141 -1 O PHE B 140 N ASP B 116 SHEET 3 AB1 8 VAL B 89 PRO B 94 -1 N VAL B 89 O GLU B 141 SHEET 4 AB1 8 GLY B 243 VAL B 248 1 O GLY B 243 N LEU B 90 SHEET 5 AB1 8 GLY B 251 PHE B 256 -1 O GLY B 251 N VAL B 248 SHEET 6 AB1 8 LEU B 264 TYR B 268 -1 O GLY B 267 N GLY B 254 SHEET 7 AB1 8 GLN B 219 PHE B 228 -1 N PHE B 228 O LEU B 264 SHEET 8 AB1 8 LEU B 309 LYS B 319 -1 O LYS B 310 N PHE B 227 LINK SG CYS A 315 C8M FAD A 401 1555 1555 1.83 LINK SG CYS B 315 C8M FAD B 401 1555 1555 1.81 CISPEP 1 PRO A 37 PRO A 38 0 0.52 CISPEP 2 PRO B 37 PRO B 38 0 -2.47 CRYST1 72.580 69.673 73.676 90.00 93.74 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013778 0.000000 0.000899 0.00000 SCALE2 0.000000 0.014353 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013602 0.00000 CONECT 2446 5944 CONECT 5383 6004 CONECT 5909 5910 5911 5912 5961 CONECT 5910 5909 CONECT 5911 5909 CONECT 5912 5909 5913 CONECT 5913 5912 5914 CONECT 5914 5913 5915 5916 CONECT 5915 5914 5920 CONECT 5916 5914 5917 5918 CONECT 5917 5916 CONECT 5918 5916 5919 5920 CONECT 5919 5918 CONECT 5920 5915 5918 5921 CONECT 5921 5920 5922 5930 CONECT 5922 5921 5923 CONECT 5923 5922 5924 CONECT 5924 5923 5925 5930 CONECT 5925 5924 5926 5927 CONECT 5926 5925 CONECT 5927 5925 5928 CONECT 5928 5927 5929 CONECT 5929 5928 5930 CONECT 5930 5921 5924 5929 CONECT 5931 5932 5948 CONECT 5932 5931 5933 5934 CONECT 5933 5932 CONECT 5934 5932 5935 CONECT 5935 5934 5936 5937 CONECT 5936 5935 CONECT 5937 5935 5938 5948 CONECT 5938 5937 5939 CONECT 5939 5938 5940 5946 CONECT 5940 5939 5941 CONECT 5941 5940 5942 5943 CONECT 5942 5941 CONECT 5943 5941 5944 5945 CONECT 5944 2446 5943 CONECT 5945 5943 5946 CONECT 5946 5939 5945 5947 CONECT 5947 5946 5948 5949 CONECT 5948 5931 5937 5947 CONECT 5949 5947 5950 CONECT 5950 5949 5951 5952 CONECT 5951 5950 CONECT 5952 5950 5953 5954 CONECT 5953 5952 CONECT 5954 5952 5955 5956 CONECT 5955 5954 CONECT 5956 5954 5957 CONECT 5957 5956 5958 CONECT 5958 5957 5959 5960 5961 CONECT 5959 5958 CONECT 5960 5958 CONECT 5961 5909 5958 CONECT 5962 5963 5964 CONECT 5963 5962 CONECT 5964 5962 5965 5966 CONECT 5965 5964 CONECT 5966 5964 5967 CONECT 5967 5966 CONECT 5969 5970 5971 5972 6021 CONECT 5970 5969 CONECT 5971 5969 CONECT 5972 5969 5973 CONECT 5973 5972 5974 CONECT 5974 5973 5975 5976 CONECT 5975 5974 5980 CONECT 5976 5974 5977 5978 CONECT 5977 5976 CONECT 5978 5976 5979 5980 CONECT 5979 5978 CONECT 5980 5975 5978 5981 CONECT 5981 5980 5982 5990 CONECT 5982 5981 5983 CONECT 5983 5982 5984 CONECT 5984 5983 5985 5990 CONECT 5985 5984 5986 5987 CONECT 5986 5985 CONECT 5987 5985 5988 CONECT 5988 5987 5989 CONECT 5989 5988 5990 CONECT 5990 5981 5984 5989 CONECT 5991 5992 6008 CONECT 5992 5991 5993 5994 CONECT 5993 5992 CONECT 5994 5992 5995 CONECT 5995 5994 5996 5997 CONECT 5996 5995 CONECT 5997 5995 5998 6008 CONECT 5998 5997 5999 CONECT 5999 5998 6000 6006 CONECT 6000 5999 6001 CONECT 6001 6000 6002 6003 CONECT 6002 6001 CONECT 6003 6001 6004 6005 CONECT 6004 5383 6003 CONECT 6005 6003 6006 CONECT 6006 5999 6005 6007 CONECT 6007 6006 6008 6009 CONECT 6008 5991 5997 6007 CONECT 6009 6007 6010 CONECT 6010 6009 6011 6012 CONECT 6011 6010 CONECT 6012 6010 6013 6014 CONECT 6013 6012 CONECT 6014 6012 6015 6016 CONECT 6015 6014 CONECT 6016 6014 6017 CONECT 6017 6016 6018 CONECT 6018 6017 6019 6020 6021 CONECT 6019 6018 CONECT 6020 6018 CONECT 6021 5969 6018 CONECT 6022 6023 6024 CONECT 6023 6022 CONECT 6024 6022 6025 6026 CONECT 6025 6024 CONECT 6026 6024 6027 CONECT 6027 6026 CONECT 6029 6030 6031 CONECT 6030 6029 CONECT 6031 6029 6032 6033 CONECT 6032 6031 CONECT 6033 6031 6034 CONECT 6034 6033 MASTER 367 0 7 34 62 0 0 6 6677 2 126 62 END