HEADER PROTEIN FIBRIL 19-MAR-25 9U4L TITLE FIBRIL STRUCTURE OF HUMAN ALPHAA-CRYSTALLIN WITH PATHOGENIC MUTATION TITLE 2 R116C COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-CRYSTALLIN A CHAIN; COMPND 3 CHAIN: D, A, B, C, E, F; COMPND 4 SYNONYM: HEAT SHOCK PROTEIN BETA-4,HSPB4,HEAT SHOCK PROTEIN FAMILY B COMPND 5 MEMBER 4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CRYAA, CRYA1, HSPB4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRYSTALLIN, AMYLOID, CRYO-EM, CATARACT, PROTEIN FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR Q.CAO,M.SONG REVDAT 1 20-AUG-25 9U4L 0 JRNL AUTH M.SONG,J.HAN,Q.CAO JRNL TITL CRYO-EM STRUCTURE OF AMYLOID FIBRILS FORMED BY FULL-LENGTH JRNL TITL 2 HUMAN ALPHA A-CRYSTALLIN WITH PATHOGENIC MUTATION R116C. JRNL REF COMMUN CHEM V. 8 233 2025 JRNL REFN ESSN 2399-3669 JRNL PMID 40770067 JRNL DOI 10.1038/S42004-025-01637-5 REMARK 2 REMARK 2 RESOLUTION. 3.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : TOPAZ, PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.700 REMARK 3 NUMBER OF PARTICLES : 58325 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9U4L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 25-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057685. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : AMYLOID FIBRILS FORMED BY ALPHA REMARK 245 A CRYSTALLIN R116C REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 2.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B, C, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 ASP D 2 REMARK 465 VAL D 3 REMARK 465 THR D 4 REMARK 465 ILE D 5 REMARK 465 GLN D 6 REMARK 465 HIS D 7 REMARK 465 PRO D 8 REMARK 465 TRP D 9 REMARK 465 PHE D 10 REMARK 465 LYS D 11 REMARK 465 ARG D 12 REMARK 465 THR D 13 REMARK 465 LEU D 14 REMARK 465 GLY D 15 REMARK 465 PRO D 16 REMARK 465 PHE D 17 REMARK 465 TYR D 18 REMARK 465 PRO D 19 REMARK 465 SER D 20 REMARK 465 GLN D 90 REMARK 465 ASP D 91 REMARK 465 ASP D 92 REMARK 465 PHE D 93 REMARK 465 VAL D 94 REMARK 465 GLU D 95 REMARK 465 ILE D 96 REMARK 465 HIS D 97 REMARK 465 GLY D 98 REMARK 465 LYS D 99 REMARK 465 HIS D 100 REMARK 465 ASN D 101 REMARK 465 GLU D 102 REMARK 465 ARG D 103 REMARK 465 GLN D 104 REMARK 465 ASP D 105 REMARK 465 ASP D 106 REMARK 465 HIS D 107 REMARK 465 GLY D 108 REMARK 465 TYR D 109 REMARK 465 ILE D 110 REMARK 465 SER D 111 REMARK 465 ARG D 112 REMARK 465 GLU D 113 REMARK 465 PHE D 114 REMARK 465 HIS D 115 REMARK 465 CYS D 116 REMARK 465 ARG D 117 REMARK 465 TYR D 118 REMARK 465 ARG D 119 REMARK 465 LEU D 120 REMARK 465 PRO D 121 REMARK 465 SER D 122 REMARK 465 ASN D 123 REMARK 465 VAL D 124 REMARK 465 ASP D 125 REMARK 465 GLN D 126 REMARK 465 SER D 127 REMARK 465 ALA D 128 REMARK 465 LEU D 129 REMARK 465 SER D 130 REMARK 465 CYS D 131 REMARK 465 SER D 132 REMARK 465 LEU D 133 REMARK 465 SER D 134 REMARK 465 ALA D 135 REMARK 465 ASP D 136 REMARK 465 GLY D 137 REMARK 465 MET D 138 REMARK 465 LEU D 139 REMARK 465 THR D 140 REMARK 465 PHE D 141 REMARK 465 CYS D 142 REMARK 465 GLY D 143 REMARK 465 PRO D 144 REMARK 465 LYS D 145 REMARK 465 ILE D 146 REMARK 465 GLN D 147 REMARK 465 THR D 148 REMARK 465 GLY D 149 REMARK 465 LEU D 150 REMARK 465 ASP D 151 REMARK 465 ALA D 152 REMARK 465 THR D 153 REMARK 465 HIS D 154 REMARK 465 ALA D 155 REMARK 465 GLU D 156 REMARK 465 ARG D 157 REMARK 465 ALA D 158 REMARK 465 ILE D 159 REMARK 465 PRO D 160 REMARK 465 VAL D 161 REMARK 465 SER D 162 REMARK 465 ARG D 163 REMARK 465 GLU D 164 REMARK 465 GLU D 165 REMARK 465 LYS D 166 REMARK 465 PRO D 167 REMARK 465 THR D 168 REMARK 465 SER D 169 REMARK 465 ALA D 170 REMARK 465 PRO D 171 REMARK 465 SER D 172 REMARK 465 SER D 173 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 GLN A 6 REMARK 465 HIS A 7 REMARK 465 PRO A 8 REMARK 465 TRP A 9 REMARK 465 PHE A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 THR A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 PHE A 17 REMARK 465 TYR A 18 REMARK 465 PRO A 19 REMARK 465 SER A 20 REMARK 465 GLN A 90 REMARK 465 ASP A 91 REMARK 465 ASP A 92 REMARK 465 PHE A 93 REMARK 465 VAL A 94 REMARK 465 GLU A 95 REMARK 465 ILE A 96 REMARK 465 HIS A 97 REMARK 465 GLY A 98 REMARK 465 LYS A 99 REMARK 465 HIS A 100 REMARK 465 ASN A 101 REMARK 465 GLU A 102 REMARK 465 ARG A 103 REMARK 465 GLN A 104 REMARK 465 ASP A 105 REMARK 465 ASP A 106 REMARK 465 HIS A 107 REMARK 465 GLY A 108 REMARK 465 TYR A 109 REMARK 465 ILE A 110 REMARK 465 SER A 111 REMARK 465 ARG A 112 REMARK 465 GLU A 113 REMARK 465 PHE A 114 REMARK 465 HIS A 115 REMARK 465 CYS A 116 REMARK 465 ARG A 117 REMARK 465 TYR A 118 REMARK 465 ARG A 119 REMARK 465 LEU A 120 REMARK 465 PRO A 121 REMARK 465 SER A 122 REMARK 465 ASN A 123 REMARK 465 VAL A 124 REMARK 465 ASP A 125 REMARK 465 GLN A 126 REMARK 465 SER A 127 REMARK 465 ALA A 128 REMARK 465 LEU A 129 REMARK 465 SER A 130 REMARK 465 CYS A 131 REMARK 465 SER A 132 REMARK 465 LEU A 133 REMARK 465 SER A 134 REMARK 465 ALA A 135 REMARK 465 ASP A 136 REMARK 465 GLY A 137 REMARK 465 MET A 138 REMARK 465 LEU A 139 REMARK 465 THR A 140 REMARK 465 PHE A 141 REMARK 465 CYS A 142 REMARK 465 GLY A 143 REMARK 465 PRO A 144 REMARK 465 LYS A 145 REMARK 465 ILE A 146 REMARK 465 GLN A 147 REMARK 465 THR A 148 REMARK 465 GLY A 149 REMARK 465 LEU A 150 REMARK 465 ASP A 151 REMARK 465 ALA A 152 REMARK 465 THR A 153 REMARK 465 HIS A 154 REMARK 465 ALA A 155 REMARK 465 GLU A 156 REMARK 465 ARG A 157 REMARK 465 ALA A 158 REMARK 465 ILE A 159 REMARK 465 PRO A 160 REMARK 465 VAL A 161 REMARK 465 SER A 162 REMARK 465 ARG A 163 REMARK 465 GLU A 164 REMARK 465 GLU A 165 REMARK 465 LYS A 166 REMARK 465 PRO A 167 REMARK 465 THR A 168 REMARK 465 SER A 169 REMARK 465 ALA A 170 REMARK 465 PRO A 171 REMARK 465 SER A 172 REMARK 465 SER A 173 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 THR B 4 REMARK 465 ILE B 5 REMARK 465 GLN B 6 REMARK 465 HIS B 7 REMARK 465 PRO B 8 REMARK 465 TRP B 9 REMARK 465 PHE B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 THR B 13 REMARK 465 LEU B 14 REMARK 465 GLY B 15 REMARK 465 PRO B 16 REMARK 465 PHE B 17 REMARK 465 TYR B 18 REMARK 465 PRO B 19 REMARK 465 SER B 20 REMARK 465 GLN B 90 REMARK 465 ASP B 91 REMARK 465 ASP B 92 REMARK 465 PHE B 93 REMARK 465 VAL B 94 REMARK 465 GLU B 95 REMARK 465 ILE B 96 REMARK 465 HIS B 97 REMARK 465 GLY B 98 REMARK 465 LYS B 99 REMARK 465 HIS B 100 REMARK 465 ASN B 101 REMARK 465 GLU B 102 REMARK 465 ARG B 103 REMARK 465 GLN B 104 REMARK 465 ASP B 105 REMARK 465 ASP B 106 REMARK 465 HIS B 107 REMARK 465 GLY B 108 REMARK 465 TYR B 109 REMARK 465 ILE B 110 REMARK 465 SER B 111 REMARK 465 ARG B 112 REMARK 465 GLU B 113 REMARK 465 PHE B 114 REMARK 465 HIS B 115 REMARK 465 CYS B 116 REMARK 465 ARG B 117 REMARK 465 TYR B 118 REMARK 465 ARG B 119 REMARK 465 LEU B 120 REMARK 465 PRO B 121 REMARK 465 SER B 122 REMARK 465 ASN B 123 REMARK 465 VAL B 124 REMARK 465 ASP B 125 REMARK 465 GLN B 126 REMARK 465 SER B 127 REMARK 465 ALA B 128 REMARK 465 LEU B 129 REMARK 465 SER B 130 REMARK 465 CYS B 131 REMARK 465 SER B 132 REMARK 465 LEU B 133 REMARK 465 SER B 134 REMARK 465 ALA B 135 REMARK 465 ASP B 136 REMARK 465 GLY B 137 REMARK 465 MET B 138 REMARK 465 LEU B 139 REMARK 465 THR B 140 REMARK 465 PHE B 141 REMARK 465 CYS B 142 REMARK 465 GLY B 143 REMARK 465 PRO B 144 REMARK 465 LYS B 145 REMARK 465 ILE B 146 REMARK 465 GLN B 147 REMARK 465 THR B 148 REMARK 465 GLY B 149 REMARK 465 LEU B 150 REMARK 465 ASP B 151 REMARK 465 ALA B 152 REMARK 465 THR B 153 REMARK 465 HIS B 154 REMARK 465 ALA B 155 REMARK 465 GLU B 156 REMARK 465 ARG B 157 REMARK 465 ALA B 158 REMARK 465 ILE B 159 REMARK 465 PRO B 160 REMARK 465 VAL B 161 REMARK 465 SER B 162 REMARK 465 ARG B 163 REMARK 465 GLU B 164 REMARK 465 GLU B 165 REMARK 465 LYS B 166 REMARK 465 PRO B 167 REMARK 465 THR B 168 REMARK 465 SER B 169 REMARK 465 ALA B 170 REMARK 465 PRO B 171 REMARK 465 SER B 172 REMARK 465 SER B 173 REMARK 465 MET C 1 REMARK 465 ASP C 2 REMARK 465 VAL C 3 REMARK 465 THR C 4 REMARK 465 ILE C 5 REMARK 465 GLN C 6 REMARK 465 HIS C 7 REMARK 465 PRO C 8 REMARK 465 TRP C 9 REMARK 465 PHE C 10 REMARK 465 LYS C 11 REMARK 465 ARG C 12 REMARK 465 THR C 13 REMARK 465 LEU C 14 REMARK 465 GLY C 15 REMARK 465 PRO C 16 REMARK 465 PHE C 17 REMARK 465 TYR C 18 REMARK 465 PRO C 19 REMARK 465 SER C 20 REMARK 465 GLN C 90 REMARK 465 ASP C 91 REMARK 465 ASP C 92 REMARK 465 PHE C 93 REMARK 465 VAL C 94 REMARK 465 GLU C 95 REMARK 465 ILE C 96 REMARK 465 HIS C 97 REMARK 465 GLY C 98 REMARK 465 LYS C 99 REMARK 465 HIS C 100 REMARK 465 ASN C 101 REMARK 465 GLU C 102 REMARK 465 ARG C 103 REMARK 465 GLN C 104 REMARK 465 ASP C 105 REMARK 465 ASP C 106 REMARK 465 HIS C 107 REMARK 465 GLY C 108 REMARK 465 TYR C 109 REMARK 465 ILE C 110 REMARK 465 SER C 111 REMARK 465 ARG C 112 REMARK 465 GLU C 113 REMARK 465 PHE C 114 REMARK 465 HIS C 115 REMARK 465 CYS C 116 REMARK 465 ARG C 117 REMARK 465 TYR C 118 REMARK 465 ARG C 119 REMARK 465 LEU C 120 REMARK 465 PRO C 121 REMARK 465 SER C 122 REMARK 465 ASN C 123 REMARK 465 VAL C 124 REMARK 465 ASP C 125 REMARK 465 GLN C 126 REMARK 465 SER C 127 REMARK 465 ALA C 128 REMARK 465 LEU C 129 REMARK 465 SER C 130 REMARK 465 CYS C 131 REMARK 465 SER C 132 REMARK 465 LEU C 133 REMARK 465 SER C 134 REMARK 465 ALA C 135 REMARK 465 ASP C 136 REMARK 465 GLY C 137 REMARK 465 MET C 138 REMARK 465 LEU C 139 REMARK 465 THR C 140 REMARK 465 PHE C 141 REMARK 465 CYS C 142 REMARK 465 GLY C 143 REMARK 465 PRO C 144 REMARK 465 LYS C 145 REMARK 465 ILE C 146 REMARK 465 GLN C 147 REMARK 465 THR C 148 REMARK 465 GLY C 149 REMARK 465 LEU C 150 REMARK 465 ASP C 151 REMARK 465 ALA C 152 REMARK 465 THR C 153 REMARK 465 HIS C 154 REMARK 465 ALA C 155 REMARK 465 GLU C 156 REMARK 465 ARG C 157 REMARK 465 ALA C 158 REMARK 465 ILE C 159 REMARK 465 PRO C 160 REMARK 465 VAL C 161 REMARK 465 SER C 162 REMARK 465 ARG C 163 REMARK 465 GLU C 164 REMARK 465 GLU C 165 REMARK 465 LYS C 166 REMARK 465 PRO C 167 REMARK 465 THR C 168 REMARK 465 SER C 169 REMARK 465 ALA C 170 REMARK 465 PRO C 171 REMARK 465 SER C 172 REMARK 465 SER C 173 REMARK 465 MET E 1 REMARK 465 ASP E 2 REMARK 465 VAL E 3 REMARK 465 THR E 4 REMARK 465 ILE E 5 REMARK 465 GLN E 6 REMARK 465 HIS E 7 REMARK 465 PRO E 8 REMARK 465 TRP E 9 REMARK 465 PHE E 10 REMARK 465 LYS E 11 REMARK 465 ARG E 12 REMARK 465 THR E 13 REMARK 465 LEU E 14 REMARK 465 GLY E 15 REMARK 465 PRO E 16 REMARK 465 PHE E 17 REMARK 465 TYR E 18 REMARK 465 PRO E 19 REMARK 465 SER E 20 REMARK 465 GLN E 90 REMARK 465 ASP E 91 REMARK 465 ASP E 92 REMARK 465 PHE E 93 REMARK 465 VAL E 94 REMARK 465 GLU E 95 REMARK 465 ILE E 96 REMARK 465 HIS E 97 REMARK 465 GLY E 98 REMARK 465 LYS E 99 REMARK 465 HIS E 100 REMARK 465 ASN E 101 REMARK 465 GLU E 102 REMARK 465 ARG E 103 REMARK 465 GLN E 104 REMARK 465 ASP E 105 REMARK 465 ASP E 106 REMARK 465 HIS E 107 REMARK 465 GLY E 108 REMARK 465 TYR E 109 REMARK 465 ILE E 110 REMARK 465 SER E 111 REMARK 465 ARG E 112 REMARK 465 GLU E 113 REMARK 465 PHE E 114 REMARK 465 HIS E 115 REMARK 465 CYS E 116 REMARK 465 ARG E 117 REMARK 465 TYR E 118 REMARK 465 ARG E 119 REMARK 465 LEU E 120 REMARK 465 PRO E 121 REMARK 465 SER E 122 REMARK 465 ASN E 123 REMARK 465 VAL E 124 REMARK 465 ASP E 125 REMARK 465 GLN E 126 REMARK 465 SER E 127 REMARK 465 ALA E 128 REMARK 465 LEU E 129 REMARK 465 SER E 130 REMARK 465 CYS E 131 REMARK 465 SER E 132 REMARK 465 LEU E 133 REMARK 465 SER E 134 REMARK 465 ALA E 135 REMARK 465 ASP E 136 REMARK 465 GLY E 137 REMARK 465 MET E 138 REMARK 465 LEU E 139 REMARK 465 THR E 140 REMARK 465 PHE E 141 REMARK 465 CYS E 142 REMARK 465 GLY E 143 REMARK 465 PRO E 144 REMARK 465 LYS E 145 REMARK 465 ILE E 146 REMARK 465 GLN E 147 REMARK 465 THR E 148 REMARK 465 GLY E 149 REMARK 465 LEU E 150 REMARK 465 ASP E 151 REMARK 465 ALA E 152 REMARK 465 THR E 153 REMARK 465 HIS E 154 REMARK 465 ALA E 155 REMARK 465 GLU E 156 REMARK 465 ARG E 157 REMARK 465 ALA E 158 REMARK 465 ILE E 159 REMARK 465 PRO E 160 REMARK 465 VAL E 161 REMARK 465 SER E 162 REMARK 465 ARG E 163 REMARK 465 GLU E 164 REMARK 465 GLU E 165 REMARK 465 LYS E 166 REMARK 465 PRO E 167 REMARK 465 THR E 168 REMARK 465 SER E 169 REMARK 465 ALA E 170 REMARK 465 PRO E 171 REMARK 465 SER E 172 REMARK 465 SER E 173 REMARK 465 MET F 1 REMARK 465 ASP F 2 REMARK 465 VAL F 3 REMARK 465 THR F 4 REMARK 465 ILE F 5 REMARK 465 GLN F 6 REMARK 465 HIS F 7 REMARK 465 PRO F 8 REMARK 465 TRP F 9 REMARK 465 PHE F 10 REMARK 465 LYS F 11 REMARK 465 ARG F 12 REMARK 465 THR F 13 REMARK 465 LEU F 14 REMARK 465 GLY F 15 REMARK 465 PRO F 16 REMARK 465 PHE F 17 REMARK 465 TYR F 18 REMARK 465 PRO F 19 REMARK 465 SER F 20 REMARK 465 GLN F 90 REMARK 465 ASP F 91 REMARK 465 ASP F 92 REMARK 465 PHE F 93 REMARK 465 VAL F 94 REMARK 465 GLU F 95 REMARK 465 ILE F 96 REMARK 465 HIS F 97 REMARK 465 GLY F 98 REMARK 465 LYS F 99 REMARK 465 HIS F 100 REMARK 465 ASN F 101 REMARK 465 GLU F 102 REMARK 465 ARG F 103 REMARK 465 GLN F 104 REMARK 465 ASP F 105 REMARK 465 ASP F 106 REMARK 465 HIS F 107 REMARK 465 GLY F 108 REMARK 465 TYR F 109 REMARK 465 ILE F 110 REMARK 465 SER F 111 REMARK 465 ARG F 112 REMARK 465 GLU F 113 REMARK 465 PHE F 114 REMARK 465 HIS F 115 REMARK 465 CYS F 116 REMARK 465 ARG F 117 REMARK 465 TYR F 118 REMARK 465 ARG F 119 REMARK 465 LEU F 120 REMARK 465 PRO F 121 REMARK 465 SER F 122 REMARK 465 ASN F 123 REMARK 465 VAL F 124 REMARK 465 ASP F 125 REMARK 465 GLN F 126 REMARK 465 SER F 127 REMARK 465 ALA F 128 REMARK 465 LEU F 129 REMARK 465 SER F 130 REMARK 465 CYS F 131 REMARK 465 SER F 132 REMARK 465 LEU F 133 REMARK 465 SER F 134 REMARK 465 ALA F 135 REMARK 465 ASP F 136 REMARK 465 GLY F 137 REMARK 465 MET F 138 REMARK 465 LEU F 139 REMARK 465 THR F 140 REMARK 465 PHE F 141 REMARK 465 CYS F 142 REMARK 465 GLY F 143 REMARK 465 PRO F 144 REMARK 465 LYS F 145 REMARK 465 ILE F 146 REMARK 465 GLN F 147 REMARK 465 THR F 148 REMARK 465 GLY F 149 REMARK 465 LEU F 150 REMARK 465 ASP F 151 REMARK 465 ALA F 152 REMARK 465 THR F 153 REMARK 465 HIS F 154 REMARK 465 ALA F 155 REMARK 465 GLU F 156 REMARK 465 ARG F 157 REMARK 465 ALA F 158 REMARK 465 ILE F 159 REMARK 465 PRO F 160 REMARK 465 VAL F 161 REMARK 465 SER F 162 REMARK 465 ARG F 163 REMARK 465 GLU F 164 REMARK 465 GLU F 165 REMARK 465 LYS F 166 REMARK 465 PRO F 167 REMARK 465 THR F 168 REMARK 465 SER F 169 REMARK 465 ALA F 170 REMARK 465 PRO F 171 REMARK 465 SER F 172 REMARK 465 SER F 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE D 23 127.81 -34.19 REMARK 500 PHE D 53 122.80 -37.83 REMARK 500 ARG D 68 71.69 -67.45 REMARK 500 SER D 81 74.69 -159.85 REMARK 500 PHE A 23 127.78 -34.15 REMARK 500 PHE A 53 122.79 -37.82 REMARK 500 ARG A 68 71.72 -67.53 REMARK 500 SER A 81 74.66 -159.87 REMARK 500 PHE B 23 127.80 -34.23 REMARK 500 PHE B 53 122.77 -37.83 REMARK 500 ARG B 68 71.65 -67.43 REMARK 500 SER B 81 74.73 -159.94 REMARK 500 PHE C 23 127.78 -34.13 REMARK 500 PHE C 53 122.81 -37.81 REMARK 500 ARG C 68 71.70 -67.45 REMARK 500 SER C 81 74.73 -159.89 REMARK 500 PHE E 23 127.77 -34.13 REMARK 500 PHE E 53 122.77 -37.79 REMARK 500 ARG E 68 71.68 -67.42 REMARK 500 SER E 81 74.71 -159.90 REMARK 500 PHE F 23 127.80 -34.18 REMARK 500 PHE F 53 122.83 -37.84 REMARK 500 ARG F 68 71.71 -67.47 REMARK 500 SER F 81 74.66 -159.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-63849 RELATED DB: EMDB REMARK 900 FIBRIL STRUCTURE OF HUMAN ALPHAA-CRYSTALLIN WITH PATHOGENIC REMARK 900 MUTATION R116C DBREF 9U4L D 1 173 UNP P02489 CRYAA_HUMAN 1 173 DBREF 9U4L A 1 173 UNP P02489 CRYAA_HUMAN 1 173 DBREF 9U4L B 1 173 UNP P02489 CRYAA_HUMAN 1 173 DBREF 9U4L C 1 173 UNP P02489 CRYAA_HUMAN 1 173 DBREF 9U4L E 1 173 UNP P02489 CRYAA_HUMAN 1 173 DBREF 9U4L F 1 173 UNP P02489 CRYAA_HUMAN 1 173 SEQADV 9U4L CYS D 116 UNP P02489 ARG 116 ENGINEERED MUTATION SEQADV 9U4L CYS A 116 UNP P02489 ARG 116 ENGINEERED MUTATION SEQADV 9U4L CYS B 116 UNP P02489 ARG 116 ENGINEERED MUTATION SEQADV 9U4L CYS C 116 UNP P02489 ARG 116 ENGINEERED MUTATION SEQADV 9U4L CYS E 116 UNP P02489 ARG 116 ENGINEERED MUTATION SEQADV 9U4L CYS F 116 UNP P02489 ARG 116 ENGINEERED MUTATION SEQRES 1 D 173 MET ASP VAL THR ILE GLN HIS PRO TRP PHE LYS ARG THR SEQRES 2 D 173 LEU GLY PRO PHE TYR PRO SER ARG LEU PHE ASP GLN PHE SEQRES 3 D 173 PHE GLY GLU GLY LEU PHE GLU TYR ASP LEU LEU PRO PHE SEQRES 4 D 173 LEU SER SER THR ILE SER PRO TYR TYR ARG GLN SER LEU SEQRES 5 D 173 PHE ARG THR VAL LEU ASP SER GLY ILE SER GLU VAL ARG SEQRES 6 D 173 SER ASP ARG ASP LYS PHE VAL ILE PHE LEU ASP VAL LYS SEQRES 7 D 173 HIS PHE SER PRO GLU ASP LEU THR VAL LYS VAL GLN ASP SEQRES 8 D 173 ASP PHE VAL GLU ILE HIS GLY LYS HIS ASN GLU ARG GLN SEQRES 9 D 173 ASP ASP HIS GLY TYR ILE SER ARG GLU PHE HIS CYS ARG SEQRES 10 D 173 TYR ARG LEU PRO SER ASN VAL ASP GLN SER ALA LEU SER SEQRES 11 D 173 CYS SER LEU SER ALA ASP GLY MET LEU THR PHE CYS GLY SEQRES 12 D 173 PRO LYS ILE GLN THR GLY LEU ASP ALA THR HIS ALA GLU SEQRES 13 D 173 ARG ALA ILE PRO VAL SER ARG GLU GLU LYS PRO THR SER SEQRES 14 D 173 ALA PRO SER SER SEQRES 1 A 173 MET ASP VAL THR ILE GLN HIS PRO TRP PHE LYS ARG THR SEQRES 2 A 173 LEU GLY PRO PHE TYR PRO SER ARG LEU PHE ASP GLN PHE SEQRES 3 A 173 PHE GLY GLU GLY LEU PHE GLU TYR ASP LEU LEU PRO PHE SEQRES 4 A 173 LEU SER SER THR ILE SER PRO TYR TYR ARG GLN SER LEU SEQRES 5 A 173 PHE ARG THR VAL LEU ASP SER GLY ILE SER GLU VAL ARG SEQRES 6 A 173 SER ASP ARG ASP LYS PHE VAL ILE PHE LEU ASP VAL LYS SEQRES 7 A 173 HIS PHE SER PRO GLU ASP LEU THR VAL LYS VAL GLN ASP SEQRES 8 A 173 ASP PHE VAL GLU ILE HIS GLY LYS HIS ASN GLU ARG GLN SEQRES 9 A 173 ASP ASP HIS GLY TYR ILE SER ARG GLU PHE HIS CYS ARG SEQRES 10 A 173 TYR ARG LEU PRO SER ASN VAL ASP GLN SER ALA LEU SER SEQRES 11 A 173 CYS SER LEU SER ALA ASP GLY MET LEU THR PHE CYS GLY SEQRES 12 A 173 PRO LYS ILE GLN THR GLY LEU ASP ALA THR HIS ALA GLU SEQRES 13 A 173 ARG ALA ILE PRO VAL SER ARG GLU GLU LYS PRO THR SER SEQRES 14 A 173 ALA PRO SER SER SEQRES 1 B 173 MET ASP VAL THR ILE GLN HIS PRO TRP PHE LYS ARG THR SEQRES 2 B 173 LEU GLY PRO PHE TYR PRO SER ARG LEU PHE ASP GLN PHE SEQRES 3 B 173 PHE GLY GLU GLY LEU PHE GLU TYR ASP LEU LEU PRO PHE SEQRES 4 B 173 LEU SER SER THR ILE SER PRO TYR TYR ARG GLN SER LEU SEQRES 5 B 173 PHE ARG THR VAL LEU ASP SER GLY ILE SER GLU VAL ARG SEQRES 6 B 173 SER ASP ARG ASP LYS PHE VAL ILE PHE LEU ASP VAL LYS SEQRES 7 B 173 HIS PHE SER PRO GLU ASP LEU THR VAL LYS VAL GLN ASP SEQRES 8 B 173 ASP PHE VAL GLU ILE HIS GLY LYS HIS ASN GLU ARG GLN SEQRES 9 B 173 ASP ASP HIS GLY TYR ILE SER ARG GLU PHE HIS CYS ARG SEQRES 10 B 173 TYR ARG LEU PRO SER ASN VAL ASP GLN SER ALA LEU SER SEQRES 11 B 173 CYS SER LEU SER ALA ASP GLY MET LEU THR PHE CYS GLY SEQRES 12 B 173 PRO LYS ILE GLN THR GLY LEU ASP ALA THR HIS ALA GLU SEQRES 13 B 173 ARG ALA ILE PRO VAL SER ARG GLU GLU LYS PRO THR SER SEQRES 14 B 173 ALA PRO SER SER SEQRES 1 C 173 MET ASP VAL THR ILE GLN HIS PRO TRP PHE LYS ARG THR SEQRES 2 C 173 LEU GLY PRO PHE TYR PRO SER ARG LEU PHE ASP GLN PHE SEQRES 3 C 173 PHE GLY GLU GLY LEU PHE GLU TYR ASP LEU LEU PRO PHE SEQRES 4 C 173 LEU SER SER THR ILE SER PRO TYR TYR ARG GLN SER LEU SEQRES 5 C 173 PHE ARG THR VAL LEU ASP SER GLY ILE SER GLU VAL ARG SEQRES 6 C 173 SER ASP ARG ASP LYS PHE VAL ILE PHE LEU ASP VAL LYS SEQRES 7 C 173 HIS PHE SER PRO GLU ASP LEU THR VAL LYS VAL GLN ASP SEQRES 8 C 173 ASP PHE VAL GLU ILE HIS GLY LYS HIS ASN GLU ARG GLN SEQRES 9 C 173 ASP ASP HIS GLY TYR ILE SER ARG GLU PHE HIS CYS ARG SEQRES 10 C 173 TYR ARG LEU PRO SER ASN VAL ASP GLN SER ALA LEU SER SEQRES 11 C 173 CYS SER LEU SER ALA ASP GLY MET LEU THR PHE CYS GLY SEQRES 12 C 173 PRO LYS ILE GLN THR GLY LEU ASP ALA THR HIS ALA GLU SEQRES 13 C 173 ARG ALA ILE PRO VAL SER ARG GLU GLU LYS PRO THR SER SEQRES 14 C 173 ALA PRO SER SER SEQRES 1 E 173 MET ASP VAL THR ILE GLN HIS PRO TRP PHE LYS ARG THR SEQRES 2 E 173 LEU GLY PRO PHE TYR PRO SER ARG LEU PHE ASP GLN PHE SEQRES 3 E 173 PHE GLY GLU GLY LEU PHE GLU TYR ASP LEU LEU PRO PHE SEQRES 4 E 173 LEU SER SER THR ILE SER PRO TYR TYR ARG GLN SER LEU SEQRES 5 E 173 PHE ARG THR VAL LEU ASP SER GLY ILE SER GLU VAL ARG SEQRES 6 E 173 SER ASP ARG ASP LYS PHE VAL ILE PHE LEU ASP VAL LYS SEQRES 7 E 173 HIS PHE SER PRO GLU ASP LEU THR VAL LYS VAL GLN ASP SEQRES 8 E 173 ASP PHE VAL GLU ILE HIS GLY LYS HIS ASN GLU ARG GLN SEQRES 9 E 173 ASP ASP HIS GLY TYR ILE SER ARG GLU PHE HIS CYS ARG SEQRES 10 E 173 TYR ARG LEU PRO SER ASN VAL ASP GLN SER ALA LEU SER SEQRES 11 E 173 CYS SER LEU SER ALA ASP GLY MET LEU THR PHE CYS GLY SEQRES 12 E 173 PRO LYS ILE GLN THR GLY LEU ASP ALA THR HIS ALA GLU SEQRES 13 E 173 ARG ALA ILE PRO VAL SER ARG GLU GLU LYS PRO THR SER SEQRES 14 E 173 ALA PRO SER SER SEQRES 1 F 173 MET ASP VAL THR ILE GLN HIS PRO TRP PHE LYS ARG THR SEQRES 2 F 173 LEU GLY PRO PHE TYR PRO SER ARG LEU PHE ASP GLN PHE SEQRES 3 F 173 PHE GLY GLU GLY LEU PHE GLU TYR ASP LEU LEU PRO PHE SEQRES 4 F 173 LEU SER SER THR ILE SER PRO TYR TYR ARG GLN SER LEU SEQRES 5 F 173 PHE ARG THR VAL LEU ASP SER GLY ILE SER GLU VAL ARG SEQRES 6 F 173 SER ASP ARG ASP LYS PHE VAL ILE PHE LEU ASP VAL LYS SEQRES 7 F 173 HIS PHE SER PRO GLU ASP LEU THR VAL LYS VAL GLN ASP SEQRES 8 F 173 ASP PHE VAL GLU ILE HIS GLY LYS HIS ASN GLU ARG GLN SEQRES 9 F 173 ASP ASP HIS GLY TYR ILE SER ARG GLU PHE HIS CYS ARG SEQRES 10 F 173 TYR ARG LEU PRO SER ASN VAL ASP GLN SER ALA LEU SER SEQRES 11 F 173 CYS SER LEU SER ALA ASP GLY MET LEU THR PHE CYS GLY SEQRES 12 F 173 PRO LYS ILE GLN THR GLY LEU ASP ALA THR HIS ALA GLU SEQRES 13 F 173 ARG ALA ILE PRO VAL SER ARG GLU GLU LYS PRO THR SER SEQRES 14 F 173 ALA PRO SER SER SHEET 1 AA1 6 GLN A 25 GLY A 28 0 SHEET 2 AA1 6 GLN B 25 GLY B 28 1 O GLN B 25 N PHE A 26 SHEET 3 AA1 6 GLN C 25 GLY C 28 1 O GLN C 25 N PHE B 26 SHEET 4 AA1 6 GLN D 25 GLY D 28 1 N PHE D 27 O GLY C 28 SHEET 5 AA1 6 GLN E 25 GLY E 28 1 O GLN E 25 N PHE D 26 SHEET 6 AA1 6 GLN F 25 GLY F 28 1 O GLN F 25 N PHE E 26 SHEET 1 AA2 6 LEU A 31 ASP A 35 0 SHEET 2 AA2 6 LEU B 31 ASP B 35 1 O GLU B 33 N PHE A 32 SHEET 3 AA2 6 LEU C 31 ASP C 35 1 O GLU C 33 N PHE B 32 SHEET 4 AA2 6 LEU D 31 ASP D 35 1 N GLU D 33 O PHE C 32 SHEET 5 AA2 6 LEU E 31 ASP E 35 1 O GLU E 33 N PHE D 32 SHEET 6 AA2 6 LEU F 31 ASP F 35 1 O GLU F 33 N PHE E 32 SHEET 1 AA3 6 TYR A 47 SER A 51 0 SHEET 2 AA3 6 TYR B 47 SER B 51 1 O SER B 51 N GLN A 50 SHEET 3 AA3 6 TYR C 47 SER C 51 1 O SER C 51 N GLN B 50 SHEET 4 AA3 6 TYR D 47 SER D 51 1 N SER D 51 O GLN C 50 SHEET 5 AA3 6 TYR E 47 SER E 51 1 O SER E 51 N GLN D 50 SHEET 6 AA3 6 TYR F 47 SER F 51 1 O SER F 51 N GLN E 50 SHEET 1 AA4 6 ARG A 54 ARG A 65 0 SHEET 2 AA4 6 ARG B 54 ARG B 65 1 O ARG B 54 N THR A 55 SHEET 3 AA4 6 ARG C 54 ARG C 65 1 O GLU C 63 N SER B 62 SHEET 4 AA4 6 ARG D 54 ARG D 65 1 N ILE D 61 O SER C 62 SHEET 5 AA4 6 ARG E 54 ARG E 65 1 O ARG E 54 N THR D 55 SHEET 6 AA4 6 ARG F 54 ARG F 65 1 O GLU F 63 N SER E 62 SHEET 1 AA5 6 PHE A 71 VAL A 77 0 SHEET 2 AA5 6 PHE B 71 VAL B 77 1 O ASP B 76 N VAL A 77 SHEET 3 AA5 6 PHE C 71 VAL C 77 1 O ASP C 76 N VAL B 77 SHEET 4 AA5 6 PHE D 71 VAL D 77 1 N ASP D 76 O VAL C 77 SHEET 5 AA5 6 PHE E 71 VAL E 77 1 O PHE E 74 N ILE D 73 SHEET 6 AA5 6 PHE F 71 VAL F 77 1 O PHE F 74 N ILE E 73 SHEET 1 AA6 2 THR A 86 VAL A 87 0 SHEET 2 AA6 2 THR B 86 VAL B 87 1 O THR B 86 N VAL A 87 SHEET 1 AA7 2 THR E 86 VAL E 87 0 SHEET 2 AA7 2 THR F 86 VAL F 87 1 O THR F 86 N VAL E 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 578 VAL D 89 TER 1156 VAL A 89 TER 1734 VAL B 89 TER 2312 VAL C 89 TER 2890 VAL E 89 TER 3468 VAL F 89 MASTER 770 0 0 0 34 0 0 6 3462 6 0 84 END