data_9U89 # _entry.id 9U89 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.410 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9U89 pdb_00009u89 10.2210/pdb9u89/pdb WWPDB D_1300057892 ? ? BMRB 36747 ? 10.13018/BMR36747 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-04-08 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9U89 _pdbx_database_status.recvd_initial_deposition_date 2025-03-26 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Structure of AA(GGGTT)3AA G-quadruplex in the presence of potassium ions' _pdbx_database_related.db_id 36747 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email bharathwaj@iiserb.ac.in _pdbx_contact_author.name_first Bharathwaj _pdbx_contact_author.name_last Sathyamoothy _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-1568-2599 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Negi, D.' 1 ? 'Sannapureddi, R.K.R.' 2 0000-0002-9001-5315 'Sathyamoorthy, B.' 3 0000-0002-1568-2599 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_patent _citation.unpublished_flag ? ? ? ? ? ? ? ? ? ? primary 'To Be Published' ? 0353 ? ? ? ? ? ? ? 'Molecular Interactions of a Frustrated G-Rich Sequence: Atomistic Insights into Folding of DNA G-Quadruplexes' ? ? ? ? ? ? ? ? ? ? ? ? ? US ? ? 1 'J Phys Chem Lett' ? 0353 1948-7185 ? ? 11 ? 10016 10022 'Characterization of DNA G-quadruplex Topologies with NMR Chemical Shifts.' 2020 ? 10.1021/acs.jpclett.0c02969 33179931 ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Negi, D.' 1 ? primary 'Sannapureddi, R.K.R.' 2 0000-0002-9001-5315 primary 'Sathyamoorthy, B.' 3 0000-0002-1568-2599 1 'Reddy Sannapureddi, R.K.' 4 0000-0002-9001-5315 1 'Mohanty, M.K.' 5 ? 1 'Gautam, A.K.' 6 ? 1 'Sathyamoorthy, B.' 7 0000-0002-1568-2599 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*AP*AP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*A)-3') ; _entity.formula_weight 6983.497 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DA)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG)(DT)(DT)(DG)(DG)(DG) (DA)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can AAGGGTTGGGTTGGGTTGGGAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DT n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DT n 1 18 DG n 1 19 DG n 1 20 DG n 1 21 DA n 1 22 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DT 12 12 12 DT DT A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DT 17 17 17 DT DT A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DA 21 21 21 DA DA A . n A 1 22 DA 22 22 22 DA DA A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9U89 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9U89 _struct.title 'Structure of AA(GGGTT)3GGGAA G-quadruplex in the presence of potassium ions' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9U89 _struct_keywords.text 'G-quadruplex, Frustrated sequence, Parallel, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9U89 _struct_ref.pdbx_db_accession 9U89 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9U89 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9U89 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 A DG 13 O6 ? ? A DA 1 A DG 13 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? hydrog2 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 3 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 3 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DT 7 O2 ? ? A DG 4 A DT 7 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog7 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 4 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 4 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DT 7 O4 ? ? A DG 5 A DT 7 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 5 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 5 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 20 N2 ? ? A DG 5 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 20 N1 ? ? A DG 5 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 8 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 8 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DT 12 O4 ? ? A DG 10 A DT 12 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog21 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DT 12 N3 ? ? ? 1_555 A DG 14 N7 ? ? A DT 12 A DG 14 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog24 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 13 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DT 17 O2 ? ? A DG 14 A DT 17 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog27 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 14 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 14 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DT 17 O4 ? ? A DG 15 A DT 17 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog30 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 20 O6 ? ? A DG 15 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 20 N7 ? ? A DG 15 A DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DG 19 N7 ? ? A DT 17 A DG 19 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9U89 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.91 108.30 3.61 0.30 N 2 1 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.85 118.60 -3.75 0.60 N 3 1 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 120.77 117.70 3.07 0.50 N 4 1 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.42 118.60 -4.18 0.60 N 5 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.12 108.30 2.82 0.30 N 6 1 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 114.52 111.50 3.02 0.50 N 7 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 115.35 108.30 7.05 0.30 N 8 1 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.61 122.30 -3.69 0.60 N 9 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.46 108.30 4.16 0.30 N 10 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 114.89 108.30 6.59 0.30 N 11 1 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.89 108.30 2.59 0.30 N 12 1 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.06 108.30 3.76 0.30 N 13 1 N3 A DG 13 ? ? C2 A DG 13 ? ? N2 A DG 13 ? ? 115.67 119.90 -4.23 0.70 N 14 1 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.80 108.30 4.50 0.30 N 15 1 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 114.72 108.30 6.42 0.30 N 16 1 "C3'" A DG 15 ? ? "O3'" A DG 15 ? ? P A DT 16 ? ? 127.20 119.70 7.50 1.20 Y 17 1 "O4'" A DT 16 ? ? "C1'" A DT 16 ? ? N1 A DT 16 ? ? 112.55 108.30 4.25 0.30 N 18 1 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 111.48 108.30 3.18 0.30 N 19 1 "C3'" A DG 20 ? ? "C2'" A DG 20 ? ? "C1'" A DG 20 ? ? 97.23 102.40 -5.17 0.80 N 20 1 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 115.57 108.30 7.27 0.30 N 21 1 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 111.05 108.30 2.75 0.30 N 22 1 N1 A DA 21 ? ? C6 A DA 21 ? ? N6 A DA 21 ? ? 114.43 118.60 -4.17 0.60 N 23 1 "C3'" A DA 21 ? ? "O3'" A DA 21 ? ? P A DA 22 ? ? 127.73 119.70 8.03 1.20 Y 24 1 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 110.77 108.30 2.47 0.30 N 25 1 C5 A DA 22 ? ? C6 A DA 22 ? ? N1 A DA 22 ? ? 120.73 117.70 3.03 0.50 N 26 2 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.67 108.30 3.37 0.30 N 27 2 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.02 117.70 3.32 0.50 N 28 2 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.35 118.60 -4.25 0.60 N 29 2 C4 A DA 2 ? ? C5 A DA 2 ? ? C6 A DA 2 ? ? 113.74 117.00 -3.26 0.50 N 30 2 C5 A DA 2 ? ? C6 A DA 2 ? ? N1 A DA 2 ? ? 121.09 117.70 3.39 0.50 N 31 2 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 113.93 118.60 -4.67 0.60 N 32 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.51 108.30 4.21 0.30 N 33 2 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 115.03 111.50 3.53 0.50 N 34 2 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.66 122.30 -3.64 0.60 N 35 2 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 118.97 122.90 -3.93 0.60 N 36 2 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.97 108.30 5.67 0.30 N 37 2 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.48 122.30 -3.82 0.60 N 38 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.08 108.30 2.78 0.30 N 39 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? "C2'" A DG 10 ? ? 100.79 105.90 -5.11 0.80 N 40 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.82 108.30 5.52 0.30 N 41 2 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.42 108.30 2.12 0.30 N 42 2 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 119.24 122.90 -3.66 0.60 N 43 2 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.59 108.30 4.29 0.30 N 44 2 N3 A DT 12 ? ? C2 A DT 12 ? ? O2 A DT 12 ? ? 118.58 122.30 -3.72 0.60 N 45 2 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 110.74 108.30 2.44 0.30 N 46 2 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 112.77 108.30 4.47 0.30 N 47 2 "O4'" A DT 16 ? ? "C1'" A DT 16 ? ? N1 A DT 16 ? ? 110.83 108.30 2.53 0.30 N 48 2 N3 A DT 16 ? ? C2 A DT 16 ? ? O2 A DT 16 ? ? 117.15 122.30 -5.15 0.60 N 49 2 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 119.20 122.90 -3.70 0.60 N 50 2 N3 A DT 17 ? ? C2 A DT 17 ? ? O2 A DT 17 ? ? 117.60 122.30 -4.70 0.60 N 51 2 C6 A DT 17 ? ? C5 A DT 17 ? ? C7 A DT 17 ? ? 117.20 122.90 -5.70 0.60 N 52 2 "O4'" A DG 18 ? ? "C1'" A DG 18 ? ? N9 A DG 18 ? ? 111.00 108.30 2.70 0.30 N 53 2 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 113.60 108.30 5.30 0.30 N 54 2 N1 A DA 21 ? ? C6 A DA 21 ? ? N6 A DA 21 ? ? 113.19 118.60 -5.41 0.60 N 55 2 "C3'" A DA 21 ? ? "O3'" A DA 21 ? ? P A DA 22 ? ? 127.13 119.70 7.43 1.20 Y 56 2 N1 A DA 22 ? ? C6 A DA 22 ? ? N6 A DA 22 ? ? 114.81 118.60 -3.79 0.60 N 57 3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.58 108.30 3.28 0.30 N 58 3 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.35 117.70 3.65 0.50 N 59 3 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.03 118.60 -4.57 0.60 N 60 3 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.21 118.60 -4.39 0.60 N 61 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.93 108.30 2.63 0.30 N 62 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.22 108.30 4.92 0.30 N 63 3 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 114.80 111.50 3.30 0.50 N 64 3 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.25 122.90 -3.65 0.60 N 65 3 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.22 108.30 4.92 0.30 N 66 3 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.28 122.30 -4.02 0.60 N 67 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.79 122.90 -4.11 0.60 N 68 3 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DG 8 ? ? 128.12 119.70 8.42 1.20 Y 69 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.54 108.30 2.24 0.30 N 70 3 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DG 9 ? ? 127.39 119.70 7.69 1.20 Y 71 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 116.80 108.30 8.50 0.30 N 72 3 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DT 11 ? ? 128.30 119.70 8.60 1.20 Y 73 3 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.68 108.30 3.38 0.30 N 74 3 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.00 122.30 -4.30 0.60 N 75 3 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.68 122.90 -4.22 0.60 N 76 3 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 113.81 108.30 5.51 0.30 N 77 3 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.75 122.90 -4.15 0.60 N 78 3 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 112.89 108.30 4.59 0.30 N 79 3 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.75 108.30 2.45 0.30 N 80 3 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 113.55 108.30 5.25 0.30 N 81 3 "O4'" A DT 16 ? ? "C1'" A DT 16 ? ? N1 A DT 16 ? ? 111.63 108.30 3.33 0.30 N 82 3 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 111.98 108.30 3.68 0.30 N 83 3 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.27 108.30 1.97 0.30 N 84 3 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 112.70 108.30 4.40 0.30 N 85 3 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 110.26 108.30 1.96 0.30 N 86 3 C4 A DA 21 ? ? C5 A DA 21 ? ? C6 A DA 21 ? ? 113.16 117.00 -3.84 0.50 N 87 3 C5 A DA 21 ? ? C6 A DA 21 ? ? N1 A DA 21 ? ? 121.36 117.70 3.66 0.50 N 88 3 N1 A DA 21 ? ? C6 A DA 21 ? ? N6 A DA 21 ? ? 113.60 118.60 -5.00 0.60 N 89 3 "C3'" A DA 21 ? ? "O3'" A DA 21 ? ? P A DA 22 ? ? 127.57 119.70 7.87 1.20 Y 90 3 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 110.85 108.30 2.55 0.30 N 91 3 C4 A DA 22 ? ? C5 A DA 22 ? ? C6 A DA 22 ? ? 114.00 117.00 -3.00 0.50 N 92 3 N1 A DA 22 ? ? C6 A DA 22 ? ? N6 A DA 22 ? ? 111.86 118.60 -6.74 0.60 N 93 4 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.58 108.30 3.28 0.30 N 94 4 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 121.35 117.70 3.65 0.50 N 95 4 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.03 118.60 -4.57 0.60 N 96 4 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.21 118.60 -4.39 0.60 N 97 4 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.93 108.30 2.63 0.30 N 98 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.22 108.30 4.92 0.30 N 99 4 C5 A DG 5 ? ? C6 A DG 5 ? ? N1 A DG 5 ? ? 114.80 111.50 3.30 0.50 N 100 4 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.25 122.90 -3.65 0.60 N 101 4 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 113.22 108.30 4.92 0.30 N 102 4 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.28 122.30 -4.02 0.60 N 103 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 118.79 122.90 -4.11 0.60 N 104 4 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DG 8 ? ? 128.12 119.70 8.42 1.20 Y 105 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.54 108.30 2.24 0.30 N 106 4 "C3'" A DG 8 ? ? "O3'" A DG 8 ? ? P A DG 9 ? ? 127.39 119.70 7.69 1.20 Y 107 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 116.80 108.30 8.50 0.30 N 108 4 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DT 11 ? ? 128.30 119.70 8.60 1.20 Y 109 4 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.68 108.30 3.38 0.30 N 110 4 N3 A DT 11 ? ? C2 A DT 11 ? ? O2 A DT 11 ? ? 118.00 122.30 -4.30 0.60 N 111 4 C6 A DT 11 ? ? C5 A DT 11 ? ? C7 A DT 11 ? ? 118.68 122.90 -4.22 0.60 N 112 4 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 113.81 108.30 5.51 0.30 N 113 4 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 118.75 122.90 -4.15 0.60 N 114 4 "O4'" A DG 13 ? ? "C1'" A DG 13 ? ? N9 A DG 13 ? ? 112.89 108.30 4.59 0.30 N 115 4 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.75 108.30 2.45 0.30 N 116 4 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 113.55 108.30 5.25 0.30 N 117 4 "O4'" A DT 16 ? ? "C1'" A DT 16 ? ? N1 A DT 16 ? ? 111.63 108.30 3.33 0.30 N 118 4 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 111.98 108.30 3.68 0.30 N 119 4 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 110.27 108.30 1.97 0.30 N 120 4 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 112.70 108.30 4.40 0.30 N 121 4 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 110.26 108.30 1.96 0.30 N 122 4 C4 A DA 21 ? ? C5 A DA 21 ? ? C6 A DA 21 ? ? 113.16 117.00 -3.84 0.50 N 123 4 C5 A DA 21 ? ? C6 A DA 21 ? ? N1 A DA 21 ? ? 121.36 117.70 3.66 0.50 N 124 4 N1 A DA 21 ? ? C6 A DA 21 ? ? N6 A DA 21 ? ? 113.60 118.60 -5.00 0.60 N 125 4 "C3'" A DA 21 ? ? "O3'" A DA 21 ? ? P A DA 22 ? ? 127.57 119.70 7.87 1.20 Y 126 4 "O4'" A DA 22 ? ? "C1'" A DA 22 ? ? N9 A DA 22 ? ? 110.85 108.30 2.55 0.30 N 127 4 C4 A DA 22 ? ? C5 A DA 22 ? ? C6 A DA 22 ? ? 114.00 117.00 -3.00 0.50 N 128 4 N1 A DA 22 ? ? C6 A DA 22 ? ? N6 A DA 22 ? ? 111.86 118.60 -6.74 0.60 N 129 5 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.54 108.30 3.24 0.30 N 130 5 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 120.79 117.70 3.09 0.50 N 131 5 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 113.92 118.60 -4.68 0.60 N 132 5 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.47 118.60 -4.13 0.60 N 133 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.38 108.30 2.08 0.30 N 134 5 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 115.01 119.90 -4.89 0.70 N 135 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.66 108.30 2.36 0.30 N 136 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.17 108.30 4.87 0.30 N 137 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.77 108.30 5.47 0.30 N 138 5 "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? "C1'" A DT 7 ? ? 97.53 102.40 -4.87 0.80 N 139 5 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 111.52 108.30 3.22 0.30 N 140 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.09 108.30 2.79 0.30 N 141 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.41 108.30 2.11 0.30 N 142 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 114.62 108.30 6.32 0.30 N 143 5 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.98 108.30 3.68 0.30 N 144 5 "O4'" A DT 12 ? ? "C1'" A DT 12 ? ? N1 A DT 12 ? ? 112.79 108.30 4.49 0.30 N 145 5 C6 A DT 12 ? ? C5 A DT 12 ? ? C7 A DT 12 ? ? 117.65 122.90 -5.25 0.60 N 146 5 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 114.29 108.30 5.99 0.30 N 147 5 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 113.02 108.30 4.72 0.30 N 148 5 C6 A DT 16 ? ? C5 A DT 16 ? ? C7 A DT 16 ? ? 118.49 122.90 -4.41 0.60 N 149 5 "O4'" A DT 17 ? ? "C1'" A DT 17 ? ? N1 A DT 17 ? ? 112.78 108.30 4.48 0.30 N 150 5 "O4'" A DG 19 ? ? "C1'" A DG 19 ? ? N9 A DG 19 ? ? 112.53 108.30 4.23 0.30 N 151 5 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 113.15 108.30 4.85 0.30 N 152 5 C5 A DG 20 ? ? C6 A DG 20 ? ? N1 A DG 20 ? ? 114.55 111.50 3.05 0.50 N 153 5 N3 A DG 20 ? ? C2 A DG 20 ? ? N2 A DG 20 ? ? 115.57 119.90 -4.33 0.70 N 154 5 "O4'" A DA 21 ? ? "C1'" A DA 21 ? ? N9 A DA 21 ? ? 112.88 108.30 4.58 0.30 N # _pdbx_nmr_ensemble.entry_id 9U89 _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 5 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9U89 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;1.5 mM DNA (5'-D(*AP*AP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*A)-3'), 20 mM potassium phosphate, 50 mM potassium chloride, 50 uM DSS, 95% H2O/5% D2O ; _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' _pdbx_nmr_sample_details.label GGGTT _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details '1.5 mM DNA, 20 mM Potassium Phosphate, 50 mM Potassium Chloride, 50 uM DSS.' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*AP*AP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*TP*TP*GP*GP*GP*AP*A)-3') ; 1.5 ? mM 'natural abundance' 1 'potassium phosphate' 20 ? mM 'natural abundance' 1 'potassium chloride' 50 ? mM 'natural abundance' 1 DSS 50 ? uM 'natural abundance' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 298 atm 1 7 418 '1.5 mM DNA, 20 mM Potassium Phosphate, 50 mM Potassium Chloride, 50 uM DSS.' 0.2 mM 'GGGTT_K (iso)' 0.1 pH 0.02 0.1 K 2 298 atm 1 7 418 ;1.5 mM DNA, 20 mM Potassium Phosphate, 50 mM Potassium Chloride, 50 uM DSS. Aligned in pf1 phage media (18 mg/mL) ; 0.2 mM 'GGGTT_K (pf1)' 0.1 pH 0.02 0.1 K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-13C HSQC' 1 isotropic 3 1 1 '2D DQF-COSY' 1 isotropic 4 1 1 '2D 1H-15N HMQC' 1 isotropic 5 1 1 '2D 1H-13C HSQC F2 coupled' 1 isotropic 6 1 1 '2D 1H-15N HMQC F2 coupled' 1 isotropic 7 2 1 '2D 1H-13C HSQC F2 coupled' 1 anisotropic 8 2 1 '2D 1H-15N HMQC F2 coupled' 1 anisotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 9U89 'distance geometry' ? 5 9U89 'simulated annealing' ? 6 9U89 'molecular dynamics' ? 7 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin 3.6 'Bruker Biospin' 2 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'chemical shift assignment' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 4 'peak picking' NMRFAM-SPARKY ? 'Lee W, Tonelli M, Markley JL' 5 'geometry optimization' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 6 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 7 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 DT OP3 O N N 74 DT P P N N 75 DT OP1 O N N 76 DT OP2 O N N 77 DT "O5'" O N N 78 DT "C5'" C N N 79 DT "C4'" C N R 80 DT "O4'" O N N 81 DT "C3'" C N S 82 DT "O3'" O N N 83 DT "C2'" C N N 84 DT "C1'" C N R 85 DT N1 N N N 86 DT C2 C N N 87 DT O2 O N N 88 DT N3 N N N 89 DT C4 C N N 90 DT O4 O N N 91 DT C5 C N N 92 DT C7 C N N 93 DT C6 C N N 94 DT HOP3 H N N 95 DT HOP2 H N N 96 DT "H5'" H N N 97 DT "H5''" H N N 98 DT "H4'" H N N 99 DT "H3'" H N N 100 DT "HO3'" H N N 101 DT "H2'" H N N 102 DT "H2''" H N N 103 DT "H1'" H N N 104 DT H3 H N N 105 DT H71 H N N 106 DT H72 H N N 107 DT H73 H N N 108 DT H6 H N N 109 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 DT OP3 P sing N N 78 DT OP3 HOP3 sing N N 79 DT P OP1 doub N N 80 DT P OP2 sing N N 81 DT P "O5'" sing N N 82 DT OP2 HOP2 sing N N 83 DT "O5'" "C5'" sing N N 84 DT "C5'" "C4'" sing N N 85 DT "C5'" "H5'" sing N N 86 DT "C5'" "H5''" sing N N 87 DT "C4'" "O4'" sing N N 88 DT "C4'" "C3'" sing N N 89 DT "C4'" "H4'" sing N N 90 DT "O4'" "C1'" sing N N 91 DT "C3'" "O3'" sing N N 92 DT "C3'" "C2'" sing N N 93 DT "C3'" "H3'" sing N N 94 DT "O3'" "HO3'" sing N N 95 DT "C2'" "C1'" sing N N 96 DT "C2'" "H2'" sing N N 97 DT "C2'" "H2''" sing N N 98 DT "C1'" N1 sing N N 99 DT "C1'" "H1'" sing N N 100 DT N1 C2 sing N N 101 DT N1 C6 sing N N 102 DT C2 O2 doub N N 103 DT C2 N3 sing N N 104 DT N3 C4 sing N N 105 DT N3 H3 sing N N 106 DT C4 O4 doub N N 107 DT C4 C5 sing N N 108 DT C5 C7 sing N N 109 DT C5 C6 doub N N 110 DT C7 H71 sing N N 111 DT C7 H72 sing N N 112 DT C7 H73 sing N N 113 DT C6 H6 sing N N 114 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9U89 'double helix' 9U89 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 20 1_555 A DG 5 1_555 1.836 3.137 0.057 -2.648 -4.030 -92.971 1 A_DG20:DG5_A A 20 ? A 5 ? 6 3 1 A DG 4 1_555 A DG 19 1_555 -2.260 -2.879 0.061 4.630 0.280 91.408 2 A_DG4:DG19_A A 4 ? A 19 ? 6 3 1 A DG 9 1_555 A DG 14 1_555 2.175 2.922 0.833 -8.186 -13.436 -88.924 3 A_DG9:DG14_A A 9 ? A 14 ? 6 3 1 A DG 13 1_555 A DG 8 1_555 -2.048 -2.842 -0.877 4.421 8.098 94.740 4 A_DG13:DG8_A A 13 ? A 8 ? 6 3 1 A DG 18 1_555 A DG 3 1_555 1.901 3.194 -0.212 0.690 -2.121 -88.232 5 A_DG18:DG3_A A 18 ? A 3 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 20 1_555 A DG 5 1_555 A DG 4 1_555 A DG 19 1_555 0.318 0.388 -3.165 -0.893 -1.591 -21.144 -1.686 1.219 -3.112 4.325 -2.428 -21.221 1 AA_DG20DG4:DG19DG5_AA A 20 ? A 5 ? A 4 ? A 19 ? 1 A DG 4 1_555 A DG 19 1_555 A DG 9 1_555 A DG 14 1_555 -2.221 -2.923 -0.197 -3.057 -1.967 179.364 -1.461 1.111 -0.196 -0.983 1.529 179.364 2 AA_DG4DG9:DG14DG19_AA A 4 ? A 19 ? A 9 ? A 14 ? 1 A DG 9 1_555 A DG 14 1_555 A DG 13 1_555 A DG 8 1_555 0.169 0.822 -3.172 -0.349 1.050 -24.838 -1.600 0.495 -3.201 -2.439 -0.811 -24.862 3 AA_DG9DG13:DG8DG14_AA A 9 ? A 14 ? A 13 ? A 8 ? 1 A DG 13 1_555 A DG 8 1_555 A DG 18 1_555 A DG 3 1_555 -2.216 -3.001 0.002 -2.549 -3.816 176.604 -1.501 1.108 0.006 -1.909 1.275 176.606 4 AA_DG13DG18:DG3DG8_AA A 13 ? A 8 ? A 18 ? A 3 ? # _pdbx_audit_support.funding_organization 'Science and Engineering Research Board (SERB)' _pdbx_audit_support.country India _pdbx_audit_support.grant_number CRG/2022/005088 _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE III' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 9U89 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_ #