HEADER STRUCTURAL GENOMICS 30-MAR-25 9U9X TITLE 1H, 13C, AND 15N RESONANCE ASSIGNMENTS AND SOLUTION STRUCTURE OF THE TITLE 2 CID DOMAIN OF SCAF8 (RBM16) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SR-RELATED AND CTD-ASSOCIATED FACTOR 8; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDC5L COMPLEX-ASSOCIATED PROTEIN 7,RNA-BINDING MOTIF PROTEIN COMPND 5 16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SCAF8, CCAP7, KIAA1116, RBM16; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE GATEWAY CLONING VECTOR N-TERM 8XHIS SOURCE 7 MCHERRY PCELLFREE_G05; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 1508208; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS CID DOMAIN, SCAF8, RBM16, TRANSCRIPTION, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.KUWASAKO,W.DANG,F.HE,M.TAKAHASHI,K.TSUDA,T.NAGATA,A.TANAKA, AUTHOR 2 N.KOAYASHI,T.KIGAWA,P.GUENTERT,M.SHIROUZU,S.YOKOYAMA,Y.MUTO,RIKEN AUTHOR 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 1 01-APR-26 9U9X 0 JRNL AUTH K.KUWASAKO,W.DANG,F.HE,M.TAKAHASHI,K.TSUDA,T.NAGATA, JRNL AUTH 2 A.TANAKA,N.KOBAYASHI,T.KIGAWA,P.GUNTERT,M.SHIROUZU, JRNL AUTH 3 S.YOKOYAMA,Y.MUTO JRNL TITL 1H, 13C, AND 15N RESONANCE ASSIGNMENTS AND SOLUTION JRNL TITL 2 STRUCTURE OF THE CID DOMAIN OF SCAF8 (RBM16) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 12 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9U9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057643. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-99% 13C; U-99% 15N] REMARK 210 CID DOMAIN OF HUMAN SCAF8, 100 REMARK 210 MM NONE SODIUM CHLORIDE, 1 MM [U- REMARK 210 99% 2H] D-DTT, 20 MM [U-99% 2H] REMARK 210 D-TRIS HCL, 0.02 % NONE NAN3, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C,15N SEPARATED NOESY; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HCCH- REMARK 210 COSY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : KUJIRA, CYANA 2.2, MAGRO-NMRVIEW REMARK 210 1.2.38, TALOS, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 10 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 11 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 112 11.55 -64.10 REMARK 500 1 SER A 147 -178.86 59.78 REMARK 500 2 MET A 10 26.21 -74.96 REMARK 500 2 PRO A 112 13.32 -65.68 REMARK 500 3 PRO A 112 7.33 -64.44 REMARK 500 4 ASP A 8 -59.03 -150.54 REMARK 500 4 MET A 10 18.63 54.41 REMARK 500 4 PRO A 112 7.42 -65.03 REMARK 500 5 MET A 10 19.81 56.58 REMARK 500 5 PRO A 112 13.18 -65.93 REMARK 500 6 SER A 6 -155.02 -147.41 REMARK 500 7 ASP A 8 87.31 -68.32 REMARK 500 7 MET A 10 27.62 -149.83 REMARK 500 7 PRO A 112 15.94 -62.88 REMARK 500 7 SER A 150 -53.09 62.86 REMARK 500 8 SER A 2 -178.93 60.47 REMARK 500 8 MET A 10 29.97 -142.27 REMARK 500 8 PRO A 112 15.09 -62.64 REMARK 500 9 MET A 10 28.48 -76.14 REMARK 500 10 SER A 5 146.54 63.76 REMARK 500 10 PRO A 112 15.06 -62.34 REMARK 500 11 PRO A 112 12.62 -61.95 REMARK 500 12 PRO A 112 11.92 -62.69 REMARK 500 13 ASN A 9 -107.23 47.68 REMARK 500 13 PRO A 112 15.82 -61.50 REMARK 500 14 PRO A 112 15.38 -61.93 REMARK 500 15 SER A 5 -26.62 63.87 REMARK 500 15 ASN A 9 101.81 -58.62 REMARK 500 15 MET A 10 16.21 53.78 REMARK 500 15 ASP A 91 119.12 -39.11 REMARK 500 15 PRO A 112 8.08 -60.86 REMARK 500 15 SER A 147 168.34 61.48 REMARK 500 16 MET A 10 12.66 -64.90 REMARK 500 16 PRO A 112 18.13 -62.58 REMARK 500 17 PRO A 112 12.95 -62.83 REMARK 500 18 ASN A 9 -151.11 52.57 REMARK 500 18 MET A 10 12.04 -68.79 REMARK 500 18 CYS A 111 160.73 -49.77 REMARK 500 18 PRO A 112 13.16 -63.84 REMARK 500 19 SER A 2 -42.97 63.08 REMARK 500 19 SER A 6 160.32 62.89 REMARK 500 19 MET A 10 18.92 57.73 REMARK 500 19 PRO A 112 7.61 -63.98 REMARK 500 20 PRO A 112 12.93 -64.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36749 RELATED DB: BMRB REMARK 900 1H, 13C, AND 15N RESONANCE ASSIGNMENTS AND SOLUTION STRUCTURE OF REMARK 900 THE CID DOMAIN OF SCAF8 (RBM16) DBREF 9U9X A 10 146 UNP Q9UPN6 SCAF8_HUMAN 1 137 SEQADV 9U9X GLY A 1 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X SER A 2 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X SER A 3 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X GLY A 4 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X SER A 5 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X SER A 6 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X GLY A 7 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X ASP A 8 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X ASN A 9 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X SER A 147 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X GLY A 148 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X PRO A 149 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X SER A 150 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X SER A 151 UNP Q9UPN6 EXPRESSION TAG SEQADV 9U9X GLY A 152 UNP Q9UPN6 EXPRESSION TAG SEQRES 1 A 152 GLY SER SER GLY SER SER GLY ASP ASN MET GLU ALA VAL SEQRES 2 A 152 LYS THR PHE ASN SER GLU LEU TYR SER LEU ASN ASP TYR SEQRES 3 A 152 LYS PRO PRO ILE SER LYS ALA LYS MET THR GLN ILE THR SEQRES 4 A 152 LYS ALA ALA ILE LYS ALA ILE LYS PHE TYR LYS HIS VAL SEQRES 5 A 152 VAL GLN SER VAL GLU LYS PHE ILE GLN LYS CYS LYS PRO SEQRES 6 A 152 GLU TYR LYS VAL PRO GLY LEU TYR VAL ILE ASP SER ILE SEQRES 7 A 152 VAL ARG GLN SER ARG HIS GLN PHE GLY GLN GLU LYS ASP SEQRES 8 A 152 VAL PHE ALA PRO ARG PHE SER ASN ASN ILE ILE SER THR SEQRES 9 A 152 PHE GLN ASN LEU TYR ARG CYS PRO GLY ASP ASP LYS SER SEQRES 10 A 152 LYS ILE VAL ARG VAL LEU ASN LEU TRP GLN LYS ASN ASN SEQRES 11 A 152 VAL PHE LYS SER GLU ILE ILE GLN PRO LEU LEU ASP MET SEQRES 12 A 152 ALA ALA GLY SER GLY PRO SER SER GLY HELIX 1 AA1 MET A 10 SER A 22 1 13 HELIX 2 AA2 LEU A 23 TYR A 26 5 4 HELIX 3 AA3 SER A 31 ALA A 45 1 15 HELIX 4 AA4 PHE A 48 CYS A 63 1 16 HELIX 5 AA5 LYS A 64 GLU A 66 5 3 HELIX 6 AA6 TYR A 67 PHE A 86 1 20 HELIX 7 AA7 PHE A 93 SER A 98 1 6 HELIX 8 AA8 ASN A 100 TYR A 109 1 10 HELIX 9 AA9 ASP A 115 ASN A 129 1 15 HELIX 10 AB1 LYS A 133 GLY A 146 1 14 CISPEP 1 PRO A 28 PRO A 29 1 -1.83 CISPEP 2 PRO A 28 PRO A 29 2 -3.29 CISPEP 3 PRO A 28 PRO A 29 3 -2.37 CISPEP 4 PRO A 28 PRO A 29 4 -3.75 CISPEP 5 PRO A 28 PRO A 29 5 -5.76 CISPEP 6 PRO A 28 PRO A 29 6 -0.27 CISPEP 7 PRO A 28 PRO A 29 7 -3.30 CISPEP 8 PRO A 28 PRO A 29 8 -3.30 CISPEP 9 PRO A 28 PRO A 29 9 -5.50 CISPEP 10 PRO A 28 PRO A 29 10 -1.07 CISPEP 11 PRO A 28 PRO A 29 11 -1.98 CISPEP 12 PRO A 28 PRO A 29 12 -1.78 CISPEP 13 PRO A 28 PRO A 29 13 -2.63 CISPEP 14 PRO A 28 PRO A 29 14 -6.63 CISPEP 15 PRO A 28 PRO A 29 15 -2.41 CISPEP 16 PRO A 28 PRO A 29 16 -2.86 CISPEP 17 PRO A 28 PRO A 29 17 -2.63 CISPEP 18 PRO A 28 PRO A 29 18 -4.03 CISPEP 19 PRO A 28 PRO A 29 19 -7.72 CISPEP 20 PRO A 28 PRO A 29 20 -2.92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 164 0 0 10 0 0 0 6 1201 1 0 12 END