HEADER TRANSFERASE 02-APR-25 9UBC TITLE SUB-PARTICLE STRUCTURE OF THE ITERATIVE ACETYLTRANSFERASE FROM TITLE 2 ACTINOMYCETES IN COMPLEX WITH ACCOA AND MONOACETYLATED LASSO PEPTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GCN5-RELATED N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALBUSNODIN FAMILY LASSO PEPTIDE; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOSYNNEMA MIRUM DSM 43827; SOURCE 3 ORGANISM_TAXID: 446462; SOURCE 4 GENE: AMIR_6318; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ACTINOSYNNEMA MIRUM DSM 43827; SOURCE 9 ORGANISM_TAXID: 446462; SOURCE 10 GENE: FHR32_000276; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GCN5-RELATED N-ACETYLTRANSFERASES, ACTINOMYCETES, ACCOA, LASSO KEYWDS 2 PEPTIDES, TRANSFERASE EXPDTA ELECTRON MICROSCOPY AUTHOR S.WU,J.XIONG,D.LEI,S.DONG REVDAT 1 25-FEB-26 9UBC 0 JRNL AUTH J.XIONG,S.WU,Z.LIANG,X.GONG,S.FANG,F.TAO,Q.WU,J.CUI,K.GAO, JRNL AUTH 2 S.LUO,D.LEI,S.DONG JRNL TITL ITERATIVE ACYLATION ON MATURE LASSO PEPTIDES BY WIDESPREAD JRNL TITL 2 GNATS FOR LIPOLASSO PRODUCTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.430 REMARK 3 NUMBER OF PARTICLES : 78368 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9UBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 03-APR-25. REMARK 100 THE DEPOSITION ID IS D_1300055252. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF ITERATIVE REMARK 245 ACETYLTRANSFERASE, ACCOA AND REMARK 245 MONOACETYLATED LASSO PEPTIDES; REMARK 245 ITERATIVE ACETYLTRANSFERASE; REMARK 245 MONOACETYLATED LASSO PEPTIDES REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 194 REMARK 465 GLY A 195 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 8 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLY C 1 CD GLU C 8 1.30 REMARK 500 N GLY C 1 OE1 GLU C 8 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN C 2 -127.33 33.35 REMARK 500 SER C 6 -168.34 -167.22 REMARK 500 ASP C 9 -102.70 57.20 REMARK 500 ALY C 10 -77.39 -83.31 REMARK 500 ARG C 11 58.68 -158.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9IY3 RELATED DB: PDB REMARK 900 RELATED ID: 9IY4 RELATED DB: PDB REMARK 900 RELATED ID: EMD-64004 RELATED DB: EMDB REMARK 900 SUB-PARTICLE STRUCTURE OF THE ITERATIVE ACETYLTRANSFERASE FROM REMARK 900 ACTINOMYCETES IN COMPLEX WITH ACCOA AND MONOACETYLATED LASSO REMARK 900 PEPTIDES DBREF 9UBC A 1 196 UNP C6WJ45 C6WJ45_ACTMD 1 196 DBREF1 9UBC C 1 15 UNP A0A7W7W6P0_9ACTN DBREF2 9UBC C A0A7W7W6P0 32 46 SEQRES 1 A 196 MET SER PRO GLN ASP ASP LEU ILE VAL TRP LEU ARG GLY SEQRES 2 A 196 ASP ARG ALA GLY LEU GLY PRO PHE SER ALA ASP LEU VAL SEQRES 3 A 196 ASP GLN TYR TRP ARG TRP GLU GLN ASP PRO SER VAL LEU SEQRES 4 A 196 ILE GLY TYR GLY ARG GLN THR PRO ASP SER LEU GLU ASN SEQRES 5 A 196 ARG ARG GLU GLY TYR GLY HIS GLN ALA ARG GLY THR ASP SEQRES 6 A 196 ASP GLN LEU ARG PHE THR VAL TYR ASP LEU THR GLY GLN SEQRES 7 A 196 ASP PRO VAL PRO VAL GLY THR THR ALA VAL LEU ILE ASP SEQRES 8 A 196 HIS HIS VAL ARG THR GLY GLU PHE VAL ILE GLN LEU GLY SEQRES 9 A 196 ALA GLY HIS ARG GLY ARG GLY LEU GLY THR GLU ALA THR SEQRES 10 A 196 ARG LEU THR LEU ASP TYR ALA PHE HIS VAL SER ALA LEU SEQRES 11 A 196 ALA CYS VAL HIS LEU ALA VAL LEU THR PRO ASN THR GLY SEQRES 12 A 196 ALA ILE ALA ALA TYR GLU ARG ALA GLY PHE ARG ARG ILE SEQRES 13 A 196 GLY GLU ARG ARG ASP SER GLY PHE TRP LEU GLY ARG ARG SEQRES 14 A 196 VAL SER GLU THR LEU MET ASP ALA VAL PRO GLU ASP PHE SEQRES 15 A 196 PRO GLY PRO SER VAL VAL ARG GLY PHE VAL GLU GLY GLY SEQRES 16 A 196 ARG SEQRES 1 C 15 GLY GLN GLY LYS GLY SER ALA GLU ASP ALY ARG ARG ALA SEQRES 2 C 15 TYR ASN MODRES 9UBC ALY C 10 LYS MODIFIED RESIDUE HET ALY C 10 12 HET ACO A 200 51 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ACO ACETYL COENZYME *A FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 ACO C23 H38 N7 O17 P3 S HELIX 1 AA1 SER A 22 ASP A 24 5 3 HELIX 2 AA2 LEU A 25 GLN A 34 1 10 HELIX 3 AA3 ASP A 35 GLY A 43 1 9 HELIX 4 AA4 SER A 49 GLY A 63 1 15 HELIX 5 AA5 ALA A 105 ARG A 108 5 4 HELIX 6 AA6 GLY A 111 VAL A 127 1 17 HELIX 7 AA7 ASN A 141 GLY A 152 1 12 HELIX 8 AA8 VAL A 178 PHE A 182 5 5 HELIX 9 AA9 SER A 186 GLU A 193 1 8 SHEET 1 AA1 8 LEU A 11 ARG A 12 0 SHEET 2 AA1 8 ALA A 16 GLY A 19 -1 O LEU A 18 N LEU A 11 SHEET 3 AA1 8 GLN A 67 ASP A 74 -1 O TYR A 73 N GLY A 17 SHEET 4 AA1 8 VAL A 81 ASP A 91 -1 O VAL A 83 N VAL A 72 SHEET 5 AA1 8 THR A 96 LEU A 103 -1 O THR A 96 N ASP A 91 SHEET 6 AA1 8 CYS A 132 LEU A 138 1 O HIS A 134 N GLY A 97 SHEET 7 AA1 8 ARG A 168 ALA A 177 -1 O THR A 173 N VAL A 137 SHEET 8 AA1 8 ARG A 154 TRP A 165 -1 N ILE A 156 O LEU A 174 LINK C ASP C 9 N ALY C 10 1555 1555 1.33 LINK C ALY C 10 N ARG C 11 1555 1555 1.33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 1534 1549 CONECT 1540 1541 CONECT 1541 1540 1542 1543 CONECT 1542 1541 CONECT 1543 1541 1544 CONECT 1544 1543 1545 CONECT 1545 1544 1546 CONECT 1546 1545 1547 CONECT 1547 1546 1548 CONECT 1548 1547 1549 1550 CONECT 1549 1534 1548 CONECT 1550 1548 1551 1552 CONECT 1551 1550 CONECT 1552 1550 CONECT 1601 1602 1606 CONECT 1602 1601 1603 CONECT 1603 1602 1604 CONECT 1604 1603 1605 1610 CONECT 1605 1604 1606 1608 CONECT 1606 1601 1605 1607 CONECT 1607 1606 CONECT 1608 1605 1609 CONECT 1609 1608 1610 CONECT 1610 1604 1609 1611 CONECT 1611 1610 1612 1621 CONECT 1612 1611 1613 1614 CONECT 1613 1612 CONECT 1614 1612 1615 1620 CONECT 1615 1614 1616 CONECT 1616 1615 1617 1618 1619 CONECT 1617 1616 CONECT 1618 1616 CONECT 1619 1616 CONECT 1620 1614 1621 1622 CONECT 1621 1611 1620 CONECT 1622 1620 1623 CONECT 1623 1622 1624 CONECT 1624 1623 1625 1626 1627 CONECT 1625 1624 CONECT 1626 1624 CONECT 1627 1624 1628 CONECT 1628 1627 1629 1630 1631 CONECT 1629 1628 CONECT 1630 1628 CONECT 1631 1628 1633 CONECT 1632 1633 1634 1635 1636 CONECT 1633 1631 1632 CONECT 1634 1632 CONECT 1635 1632 CONECT 1636 1632 1637 1638 CONECT 1637 1636 CONECT 1638 1636 1639 1640 CONECT 1639 1638 CONECT 1640 1638 1641 CONECT 1641 1640 1642 CONECT 1642 1641 1643 CONECT 1643 1642 1644 1645 CONECT 1644 1643 CONECT 1645 1643 1646 CONECT 1646 1645 1647 CONECT 1647 1646 1648 CONECT 1648 1647 1649 CONECT 1649 1648 1650 1651 CONECT 1650 1649 CONECT 1651 1649 MASTER 159 0 2 9 8 0 0 6 1649 2 65 18 END