HEADER DNA BINDING PROTEIN 06-APR-25 9UCY TITLE CRYO-EM STRUCTURE OF THE R2TG RETROTRANSPOSON IN COMPLEX WITH R2RNA TITLE 2 AND RDNA IN THE INITIATING TARGET-PRIMED REVERSE TRANSCRIPTION STATE TITLE 3 (TOP STRAND CLEAVED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: R2TG 3'UTR RNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 28S DNA TOP STRAND; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: 28S DNA BOTTOM STRAND, 3' SIDE; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: 28S DNA BOTTOM STRAND, 5' SIDE (PRIMING STRAND); COMPND 19 CHAIN: E; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TAENIOPYGIA GUTTATA; SOURCE 3 ORGANISM_TAXID: 59729; SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: TAENIOPYGIA GUTTATA; SOURCE 8 ORGANISM_TAXID: 59729; SOURCE 9 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-TP(DELTAI); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 905931; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: TAENIOPYGIA GUTTATA; SOURCE 14 ORGANISM_COMMON: ZEBRA FINCH; SOURCE 15 ORGANISM_TAXID: 59729; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: TAENIOPYGIA GUTTATA; SOURCE 19 ORGANISM_TAXID: 59729; SOURCE 20 MOL_ID: 5; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: TAENIOPYGIA GUTTATA; SOURCE 23 ORGANISM_TAXID: 59729 KEYWDS RETROTRANSPOSON, LINE, REVERSE TRANSCRIPTASE, ENDONUCLEASE, RNA KEYWDS 2 BINDING PROTEIN, RNA BINDING PROTEIN-RNA-DNA COMPLEX, DNA BINDING KEYWDS 3 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR D.KOMATSU,M.HIRAIZUMI,K.FUJIMATSU,S.YAMADA,K.YAMASHITA,H.NISHIMASU REVDAT 1 14-OCT-26 9UCY 0 JRNL AUTH D.KOMATSU,H.NISHIMASU JRNL TITL STRUCTURE MECHANISM OF THE AVIAN R2 RETROTRANSPOSON FOR JRNL TITL 2 PROGRAMMABLE GENE INTEGRATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, SERVALCAT, REMARK 3 CRYOSPARC, CRYOSPARC, CRYOSPARC, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.540 REMARK 3 NUMBER OF PARTICLES : 472858 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9UCY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-25. REMARK 100 THE DEPOSITION ID IS D_1300058251. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : R2TG-R2RNA-28SDNA TERNARY REMARK 245 COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4960.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 129 REMARK 465 SER A 130 REMARK 465 TYR A 131 REMARK 465 TYR A 132 REMARK 465 HIS A 133 REMARK 465 HIS A 134 REMARK 465 HIS A 135 REMARK 465 HIS A 136 REMARK 465 HIS A 137 REMARK 465 HIS A 138 REMARK 465 ASP A 139 REMARK 465 GLY A 140 REMARK 465 ALA A 141 REMARK 465 SER A 142 REMARK 465 TRP A 143 REMARK 465 SER A 144 REMARK 465 HIS A 145 REMARK 465 PRO A 146 REMARK 465 GLN A 147 REMARK 465 PHE A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 GLY A 155 REMARK 465 GLY A 156 REMARK 465 GLY A 157 REMARK 465 SER A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 SER A 161 REMARK 465 ALA A 162 REMARK 465 TRP A 163 REMARK 465 SER A 164 REMARK 465 HIS A 165 REMARK 465 PRO A 166 REMARK 465 GLN A 167 REMARK 465 PHE A 168 REMARK 465 GLU A 169 REMARK 465 LYS A 170 REMARK 465 GLY A 171 REMARK 465 GLY A 172 REMARK 465 SER A 173 REMARK 465 THR A 174 REMARK 465 THR A 175 REMARK 465 LEU A 176 REMARK 465 GLU A 177 REMARK 465 VAL A 178 REMARK 465 LEU A 179 REMARK 465 PHE A 180 REMARK 465 GLN A 181 REMARK 465 GLY A 182 REMARK 465 PRO A 183 REMARK 465 GLU A 184 REMARK 465 LEU A 185 REMARK 465 PHE A 186 REMARK 465 VAL A 187 REMARK 465 PRO A 188 REMARK 465 GLU A 189 REMARK 465 GLU A 190 REMARK 465 GLY A 191 REMARK 465 SER A 192 REMARK 465 SER A 193 REMARK 465 GLU A 194 REMARK 465 LYS A 195 REMARK 465 GLU A 196 REMARK 465 SER A 197 REMARK 465 GLU A 198 REMARK 465 ASP A 199 REMARK 465 ALA A 200 REMARK 465 PRO A 201 REMARK 465 LYS A 202 REMARK 465 THR A 203 REMARK 465 SER A 204 REMARK 465 PRO A 205 REMARK 465 PRO A 206 REMARK 465 THR A 207 REMARK 465 PRO A 208 REMARK 465 GLY A 209 REMARK 465 LYS A 210 REMARK 465 HIS A 211 REMARK 465 GLY A 212 REMARK 465 LEU A 213 REMARK 465 GLU A 214 REMARK 465 GLN A 215 REMARK 465 THR A 216 REMARK 465 GLY A 217 REMARK 465 GLU A 218 REMARK 465 GLU A 219 REMARK 465 ARG A 391 REMARK 465 LYS A 392 REMARK 465 PRO A 393 REMARK 465 ALA A 394 REMARK 465 GLU A 395 REMARK 465 GLU A 396 REMARK 465 PRO A 397 REMARK 465 ARG A 398 REMARK 465 GLU A 399 REMARK 465 GLU A 400 REMARK 465 PRO A 401 REMARK 465 GLY A 402 REMARK 465 THR A 403 REMARK 465 CYS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 THR A 407 REMARK 465 ARG A 408 REMARK 465 ARG A 409 REMARK 465 ALA A 410 REMARK 465 ALA A 411 REMARK 465 ALA A 412 REMARK 465 SER A 413 REMARK 465 LEU A 414 REMARK 465 ARG A 415 REMARK 465 THR A 416 REMARK 465 GLU A 417 REMARK 465 PRO A 418 REMARK 465 GLU A 419 REMARK 465 MET A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 ALA A 424 REMARK 465 GLN A 425 REMARK 465 ALA A 426 REMARK 465 GLU A 427 REMARK 465 ASP A 428 REMARK 465 ARG A 429 REMARK 465 ASP A 430 REMARK 465 ASN A 431 REMARK 465 GLY A 432 REMARK 465 PRO A 433 REMARK 465 GLY A 434 REMARK 465 ARG A 435 REMARK 465 ARG A 436 REMARK 465 PRO A 437 REMARK 465 LEU A 438 REMARK 465 PRO A 439 REMARK 465 GLY A 440 REMARK 465 ARG A 441 REMARK 465 ALA A 442 REMARK 465 ALA A 443 REMARK 465 ALA A 444 REMARK 465 GLY A 445 REMARK 465 GLY A 446 REMARK 465 ARG A 447 REMARK 465 THR A 448 REMARK 465 MET A 449 REMARK 465 ASP A 450 REMARK 465 GLU A 451 REMARK 465 ILE A 452 REMARK 465 ARG A 453 REMARK 465 ARG A 454 REMARK 465 HIS A 455 REMARK 465 PRO A 456 REMARK 465 ASP A 457 REMARK 465 LYS A 458 REMARK 465 GLY A 459 REMARK 465 ASN A 460 REMARK 465 GLY A 461 REMARK 465 GLN A 462 REMARK 465 GLN A 463 REMARK 465 ARG A 464 REMARK 465 PRO A 465 REMARK 465 THR A 466 REMARK 465 LYS A 467 REMARK 465 GLN A 468 REMARK 465 LYS A 469 REMARK 465 SER A 470 REMARK 465 GLU A 471 REMARK 465 GLU A 472 REMARK 465 GLN A 473 REMARK 465 LEU A 474 REMARK 465 GLN A 475 REMARK 465 ALA A 476 REMARK 465 TYR A 477 REMARK 465 TYR A 478 REMARK 465 LYS A 479 REMARK 465 LYS A 480 REMARK 465 THR A 481 REMARK 465 LEU A 482 REMARK 465 GLU A 483 REMARK 465 GLU A 484 REMARK 465 ARG A 485 REMARK 465 LEU A 486 REMARK 465 SER A 487 REMARK 465 ALA A 488 REMARK 465 GLY A 489 REMARK 465 ALA A 490 REMARK 465 LEU A 491 REMARK 465 ASN A 492 REMARK 465 THR A 493 REMARK 465 PHE A 494 REMARK 465 PRO A 495 REMARK 465 ARG A 496 REMARK 465 ALA A 497 REMARK 465 PHE A 498 REMARK 465 LYS A 499 REMARK 465 GLN A 500 REMARK 465 VAL A 501 REMARK 465 MET A 502 REMARK 465 GLU A 503 REMARK 465 GLY A 504 REMARK 465 ARG A 505 REMARK 465 ASP A 506 REMARK 465 ILE A 507 REMARK 465 LYS A 508 REMARK 465 LEU A 509 REMARK 465 VAL A 510 REMARK 465 ILE A 511 REMARK 465 ASN A 512 REMARK 465 GLN A 513 REMARK 465 THR A 514 REMARK 465 ALA A 515 REMARK 465 GLN A 516 REMARK 465 ASP A 517 REMARK 465 CYS A 518 REMARK 465 PHE A 519 REMARK 465 GLY A 520 REMARK 465 CYS A 521 REMARK 465 LEU A 522 REMARK 465 GLU A 523 REMARK 465 SER A 524 REMARK 465 ILE A 525 REMARK 465 SER A 526 REMARK 465 GLN A 527 REMARK 465 ILE A 528 REMARK 465 ARG A 529 REMARK 465 THR A 530 REMARK 465 ALA A 531 REMARK 465 THR A 532 REMARK 465 ARG A 533 REMARK 465 ASP A 534 REMARK 465 LYS A 535 REMARK 465 LYS A 536 REMARK 465 ASP A 537 REMARK 465 THR A 538 REMARK 465 VAL A 539 REMARK 465 THR A 540 REMARK 465 ARG A 541 REMARK 465 GLU A 542 REMARK 465 LYS A 543 REMARK 465 HIS A 544 REMARK 465 PRO A 1112 REMARK 465 SER A 1113 REMARK 465 SER A 1114 REMARK 465 GLU A 1115 REMARK 465 PRO A 1116 REMARK 465 PRO A 1117 REMARK 465 ASN A 1118 REMARK 465 ASN A 1119 REMARK 465 VAL A 1120 REMARK 465 SER A 1121 REMARK 465 THR A 1122 REMARK 465 ARG A 1385 REMARK 465 LYS A 1386 REMARK 465 SER A 1387 REMARK 465 MET A 1388 REMARK 465 VAL A 1389 REMARK 465 MET A 1390 REMARK 465 GLY A 1391 REMARK 465 GLY A 1392 REMARK 465 SER A 1393 REMARK 465 ASP A 1394 REMARK 465 TYR A 1395 REMARK 465 LYS A 1396 REMARK 465 ASP A 1397 REMARK 465 HIS A 1398 REMARK 465 ASP A 1399 REMARK 465 GLY A 1400 REMARK 465 ASP A 1401 REMARK 465 TYR A 1402 REMARK 465 LYS A 1403 REMARK 465 ASP A 1404 REMARK 465 HIS A 1405 REMARK 465 ASP A 1406 REMARK 465 ILE A 1407 REMARK 465 ASP A 1408 REMARK 465 TYR A 1409 REMARK 465 LYS A 1410 REMARK 465 ASP A 1411 REMARK 465 ASP A 1412 REMARK 465 ASP A 1413 REMARK 465 ASP A 1414 REMARK 465 LYS A 1415 REMARK 465 G B 1 REMARK 465 G B 2 REMARK 465 C B 3 REMARK 465 A B 4 REMARK 465 C B 5 REMARK 465 C B 6 REMARK 465 U B 7 REMARK 465 G B 8 REMARK 465 A B 9 REMARK 465 U B 10 REMARK 465 U B 11 REMARK 465 U B 12 REMARK 465 G B 13 REMARK 465 G B 14 REMARK 465 A B 15 REMARK 465 C B 16 REMARK 465 C B 17 REMARK 465 A B 18 REMARK 465 A B 19 REMARK 465 U B 20 REMARK 465 U B 21 REMARK 465 C B 22 REMARK 465 A B 23 REMARK 465 C B 24 REMARK 465 G B 25 REMARK 465 G B 26 REMARK 465 G B 27 REMARK 465 A B 28 REMARK 465 U B 29 REMARK 465 U B 30 REMARK 465 U B 31 REMARK 465 G B 32 REMARK 465 U B 33 REMARK 465 C B 34 REMARK 465 A B 82 REMARK 465 A B 83 REMARK 465 U B 84 REMARK 465 U B 85 REMARK 465 U B 86 REMARK 465 U B 115 REMARK 465 C B 116 REMARK 465 G B 117 REMARK 465 DA C 1 REMARK 465 DT C 2 REMARK 465 DT C 3 REMARK 465 DC C 4 REMARK 465 DA C 5 REMARK 465 DA C 6 REMARK 465 DA C 47 REMARK 465 DA C 48 REMARK 465 DG C 49 REMARK 465 DG C 50 REMARK 465 DT C 51 REMARK 465 DA C 52 REMARK 465 DG C 53 REMARK 465 DC C 54 REMARK 465 DC C 55 REMARK 465 DA C 56 REMARK 465 DA C 57 REMARK 465 DA C 58 REMARK 465 DT C 59 REMARK 465 DG C 60 REMARK 465 DC C 61 REMARK 465 DC C 62 REMARK 465 DT C 63 REMARK 465 DC C 64 REMARK 465 DG C 65 REMARK 465 DT C 66 REMARK 465 DC C 67 REMARK 465 DA C 68 REMARK 465 DT C 69 REMARK 465 DC C 70 REMARK 465 DT C 71 REMARK 465 DA C 72 REMARK 465 DA C 73 REMARK 465 DT C 74 REMARK 465 DT C 75 REMARK 465 DA C 76 REMARK 465 DG C 77 REMARK 465 DT C 78 REMARK 465 DG C 79 REMARK 465 DA C 80 REMARK 465 DT D 75 REMARK 465 DT D 76 REMARK 465 DG D 77 REMARK 465 DA D 78 REMARK 465 DA D 79 REMARK 465 DT D 80 REMARK 465 DT E 1 REMARK 465 DC E 2 REMARK 465 DA E 3 REMARK 465 DC E 4 REMARK 465 DT E 5 REMARK 465 DA E 6 REMARK 465 DA E 7 REMARK 465 DT E 8 REMARK 465 DT E 9 REMARK 465 DA E 10 REMARK 465 DG E 11 REMARK 465 DA E 12 REMARK 465 DT E 13 REMARK 465 DG E 14 REMARK 465 DA E 15 REMARK 465 DC E 16 REMARK 465 DG E 17 REMARK 465 DA E 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 31 P DC D 31 OP3 -0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 721 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 746 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A1181 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A1208 CB - CA - C ANGL. DEV. = 15.1 DEGREES REMARK 500 CYS A1215 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 A B 37 O5' - P - OP2 ANGL. DEV. = -8.3 DEGREES REMARK 500 G B 65 O3' - P - OP2 ANGL. DEV. = 6.8 DEGREES REMARK 500 G B 65 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 G B 66 O3' - P - OP2 ANGL. DEV. = 8.6 DEGREES REMARK 500 A B 100 O3' - P - OP1 ANGL. DEV. = 8.1 DEGREES REMARK 500 A B 104 O5' - P - OP1 ANGL. DEV. = 8.0 DEGREES REMARK 500 A B 104 O5' - P - OP2 ANGL. DEV. = -8.1 DEGREES REMARK 500 DG C 16 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA C 20 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG C 27 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG C 28 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 29 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DG C 30 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 33 O4' - C1' - C2' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC C 34 O4' - C1' - C2' ANGL. DEV. = -7.2 DEGREES REMARK 500 DT C 37 O3' - P - O5' ANGL. DEV. = -12.2 DEGREES REMARK 500 DT C 37 O4' - C1' - C2' ANGL. DEV. = -5.3 DEGREES REMARK 500 DT C 37 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG C 38 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 39 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC C 40 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DT C 41 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC C 44 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG D 41 O3' - P - O5' ANGL. DEV. = -14.6 DEGREES REMARK 500 DG D 41 O3' - P - OP2 ANGL. DEV. = 8.2 DEGREES REMARK 500 DC D 43 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA D 44 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 45 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 46 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG D 47 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA D 50 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC D 51 O3' - P - O5' ANGL. DEV. = -13.6 DEGREES REMARK 500 DG D 56 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC D 57 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC D 58 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DA D 63 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC D 64 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG E 26 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA E 30 O5' - P - OP2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 286 -65.94 78.30 REMARK 500 GLU A 288 -58.39 -147.13 REMARK 500 LYS A 289 98.25 63.34 REMARK 500 THR A 335 74.42 -155.97 REMARK 500 ALA A 340 -56.41 69.20 REMARK 500 CYS A 344 -45.80 -136.46 REMARK 500 ASN A 365 51.71 -98.80 REMARK 500 LYS A 612 -64.75 -94.97 REMARK 500 THR A 820 -87.39 -110.66 REMARK 500 ARG A 866 76.50 -152.11 REMARK 500 ALA A 877 -118.68 59.87 REMARK 500 SER A 924 -109.86 -154.39 REMARK 500 ASN A1103 62.20 -118.10 REMARK 500 SER A1154 -60.35 -98.08 REMARK 500 PRO A1195 71.09 -69.40 REMARK 500 ARG A1204 45.15 -142.53 REMARK 500 GLN A1207 -85.94 -101.80 REMARK 500 CYS A1215 -157.63 -122.95 REMARK 500 ASP A1281 -121.64 65.70 REMARK 500 PHE A1332 79.42 -114.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 322 0.07 SIDE CHAIN REMARK 500 ARG A 556 0.08 SIDE CHAIN REMARK 500 ARG A 721 0.07 SIDE CHAIN REMARK 500 ARG A 769 0.13 SIDE CHAIN REMARK 500 ARG A 797 0.08 SIDE CHAIN REMARK 500 ARG A 964 0.12 SIDE CHAIN REMARK 500 ARG A 977 0.09 SIDE CHAIN REMARK 500 ARG A1157 0.11 SIDE CHAIN REMARK 500 ARG A1202 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 232 SG REMARK 620 2 CYS A 235 SG 103.8 REMARK 620 3 HIS A 248 NE2 105.4 94.2 REMARK 620 4 HIS A 253 NE2 100.0 122.5 128.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 262 SG REMARK 620 2 CYS A 265 SG 110.7 REMARK 620 3 HIS A 278 NE2 115.8 102.9 REMARK 620 4 CYS A 282 SG 118.0 111.2 96.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 297 SG REMARK 620 2 CYS A 300 SG 107.0 REMARK 620 3 HIS A 313 NE2 110.0 102.1 REMARK 620 4 HIS A 318 NE2 102.3 121.7 113.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 777 OD1 REMARK 620 2 ILE A 778 O 91.8 REMARK 620 3 ASP A 878 OD2 87.8 89.4 REMARK 620 4 TTP A1507 O2A 95.3 171.6 86.5 REMARK 620 5 TTP A1507 O2B 172.2 91.9 99.0 81.5 REMARK 620 6 TTP A1507 O3G 91.0 97.5 173.0 86.7 81.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1212 SG REMARK 620 2 CYS A1215 SG 110.5 REMARK 620 3 HIS A1224 NE2 104.1 96.0 REMARK 620 4 CYS A1229 SG 114.5 118.5 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1506 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A1240 NE2 REMARK 620 2 ASP A1275 OD2 89.5 REMARK 620 3 VAL A1289 O 81.3 91.6 REMARK 620 4 HOH A1611 O 104.0 91.8 173.7 REMARK 620 5 HOH A1663 O 105.4 165.1 91.7 83.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-64055 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE R2TG RETROTRANSPOSON IN COMPLEX WITH R2RNA REMARK 900 AND RDNA IN THE INITIATING TARGET-PRIMED REVERSE TRANSCRIPTION REMARK 900 STATE (TOP STRAND CLEAVED) DBREF 9UCY A 129 1415 PDB 9UCY 9UCY 129 1415 DBREF 9UCY B 1 117 PDB 9UCY 9UCY 1 117 DBREF1 9UCY C 1 80 GB XR_011979195.1 DBREF2 9UCY C 2946502449 2814 2893 DBREF 9UCY D 31 80 PDB 9UCY 9UCY 31 80 DBREF 9UCY E 1 31 PDB 9UCY 9UCY 1 31 SEQRES 1 A 1287 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP GLY ALA SEQRES 2 A 1287 SER TRP SER HIS PRO GLN PHE GLU LYS GLY GLY GLY SER SEQRES 3 A 1287 GLY GLY GLY SER GLY GLY SER ALA TRP SER HIS PRO GLN SEQRES 4 A 1287 PHE GLU LYS GLY GLY SER THR THR LEU GLU VAL LEU PHE SEQRES 5 A 1287 GLN GLY PRO GLU LEU PHE VAL PRO GLU GLU GLY SER SER SEQRES 6 A 1287 GLU LYS GLU SER GLU ASP ALA PRO LYS THR SER PRO PRO SEQRES 7 A 1287 THR PRO GLY LYS HIS GLY LEU GLU GLN THR GLY GLU GLU SEQRES 8 A 1287 LYS VAL MET VAL THR VAL PRO ASP LYS ASN PRO PRO CYS SEQRES 9 A 1287 PRO CYS CYS GLY THR ARG VAL ASN SER VAL LEU ASN LEU SEQRES 10 A 1287 ILE GLU HIS LEU LYS VAL SER HIS GLY LYS ARG GLY VAL SEQRES 11 A 1287 CYS PHE ARG CYS ALA LYS CYS GLY LYS GLU ASN SER ASN SEQRES 12 A 1287 TYR HIS SER VAL VAL CYS HIS PHE PRO LYS CYS ARG GLY SEQRES 13 A 1287 PRO GLU THR GLU LYS ALA PRO ALA GLY GLU TRP ILE CYS SEQRES 14 A 1287 GLU VAL CYS ASN ARG ASP PHE THR THR LYS ILE GLY LEU SEQRES 15 A 1287 GLY GLN HIS LYS ARG LEU ALA HIS PRO ALA VAL ARG ASN SEQRES 16 A 1287 GLN GLU ARG ILE VAL ALA SER GLN PRO LYS GLU THR SER SEQRES 17 A 1287 ASN ARG GLY ALA HIS LYS ARG CYS TRP THR LYS GLU GLU SEQRES 18 A 1287 GLU GLU LEU LEU ILE ARG LEU GLU ALA GLN PHE GLU GLY SEQRES 19 A 1287 ASN LYS ASN ILE ASN LYS LEU ILE ALA GLU HIS ILE THR SEQRES 20 A 1287 THR LYS THR ALA LYS GLN ILE SER ASP LYS ARG ARG LEU SEQRES 21 A 1287 LEU SER ARG LYS PRO ALA GLU GLU PRO ARG GLU GLU PRO SEQRES 22 A 1287 GLY THR CYS HIS HIS THR ARG ARG ALA ALA ALA SER LEU SEQRES 23 A 1287 ARG THR GLU PRO GLU MET SER HIS HIS ALA GLN ALA GLU SEQRES 24 A 1287 ASP ARG ASP ASN GLY PRO GLY ARG ARG PRO LEU PRO GLY SEQRES 25 A 1287 ARG ALA ALA ALA GLY GLY ARG THR MET ASP GLU ILE ARG SEQRES 26 A 1287 ARG HIS PRO ASP LYS GLY ASN GLY GLN GLN ARG PRO THR SEQRES 27 A 1287 LYS GLN LYS SER GLU GLU GLN LEU GLN ALA TYR TYR LYS SEQRES 28 A 1287 LYS THR LEU GLU GLU ARG LEU SER ALA GLY ALA LEU ASN SEQRES 29 A 1287 THR PHE PRO ARG ALA PHE LYS GLN VAL MET GLU GLY ARG SEQRES 30 A 1287 ASP ILE LYS LEU VAL ILE ASN GLN THR ALA GLN ASP CYS SEQRES 31 A 1287 PHE GLY CYS LEU GLU SER ILE SER GLN ILE ARG THR ALA SEQRES 32 A 1287 THR ARG ASP LYS LYS ASP THR VAL THR ARG GLU LYS HIS SEQRES 33 A 1287 PRO LYS LYS PRO PHE GLN LYS TRP MET LYS ASP ARG ALA SEQRES 34 A 1287 ILE LYS LYS GLY ASN TYR LEU ARG PHE GLN ARG LEU PHE SEQRES 35 A 1287 TYR LEU ASP ARG GLY LYS LEU ALA LYS ILE ILE LEU ASP SEQRES 36 A 1287 ASP ILE GLU CYS LEU SER CYS ASP ILE PRO LEU SER GLU SEQRES 37 A 1287 ILE TYR SER VAL PHE LYS THR ARG TRP GLU THR THR GLY SEQRES 38 A 1287 SER PHE LYS SER LEU GLY ASP PHE LYS THR TYR GLY LYS SEQRES 39 A 1287 ALA ASP ASN THR ALA PHE ARG GLU LEU ILE THR ALA LYS SEQRES 40 A 1287 GLU ILE GLU LYS ASN VAL GLN GLU MET SER LYS GLY SER SEQRES 41 A 1287 ALA PRO GLY PRO ASP GLY ILE THR LEU GLY ASP VAL VAL SEQRES 42 A 1287 LYS MET ASP PRO GLU PHE SER ARG THR MET GLU ILE PHE SEQRES 43 A 1287 ASN LEU TRP LEU THR THR GLY LYS ILE PRO ASP MET VAL SEQRES 44 A 1287 ARG GLY CYS ARG THR VAL LEU ILE PRO LYS SER SER LYS SEQRES 45 A 1287 PRO ASP ARG LEU LYS ASP ILE ASN ASN TRP ARG PRO ILE SEQRES 46 A 1287 THR ILE GLY SER ILE LEU LEU ARG LEU PHE SER ARG ILE SEQRES 47 A 1287 VAL THR ALA ARG LEU SER LYS ALA CYS PRO LEU ASN PRO SEQRES 48 A 1287 ARG GLN ARG GLY PHE ILE ARG ALA ALA GLY CYS SER GLU SEQRES 49 A 1287 ASN LEU LYS LEU LEU GLN THR ILE ILE TRP SER ALA LYS SEQRES 50 A 1287 ARG GLU HIS ARG PRO LEU GLY VAL VAL PHE VAL ASP ILE SEQRES 51 A 1287 ALA LYS ALA PHE ASP THR VAL SER HIS GLN HIS ILE ILE SEQRES 52 A 1287 HIS ALA LEU GLN GLN ARG GLU VAL ASP PRO HIS ILE VAL SEQRES 53 A 1287 GLY LEU VAL SER ASN MET TYR GLU ASN ILE SER THR TYR SEQRES 54 A 1287 ILE THR THR LYS ARG ASN THR HIS THR ASP LYS ILE GLN SEQRES 55 A 1287 ILE ARG VAL GLY VAL LYS GLN GLY ASP PRO MET SER PRO SEQRES 56 A 1287 LEU LEU PHE ASN LEU ALA MET ASP PRO LEU LEU CYS LYS SEQRES 57 A 1287 LEU GLU GLU SER GLY LYS GLY TYR HIS ARG GLY GLN SER SEQRES 58 A 1287 SER ILE THR ALA MET ALA PHE ALA ASP ASP LEU VAL LEU SEQRES 59 A 1287 LEU SER ASP SER TRP GLU ASN MET ASN THR ASN ILE SER SEQRES 60 A 1287 ILE LEU GLU THR PHE CYS ASN LEU THR GLY LEU LYS THR SEQRES 61 A 1287 GLN GLY GLN LYS CYS HIS GLY PHE TYR ILE LYS PRO THR SEQRES 62 A 1287 LYS ASP SER TYR THR ILE ASN ASP CYS ALA ALA TRP THR SEQRES 63 A 1287 ILE ASN GLY THR PRO LEU ASN MET ILE ASP PRO GLY GLU SEQRES 64 A 1287 SER GLU LYS TYR LEU GLY LEU GLN PHE ASP PRO TRP ILE SEQRES 65 A 1287 GLY ILE ALA ARG SER GLY LEU SER THR LYS LEU ASP PHE SEQRES 66 A 1287 TRP LEU GLN ARG ILE ASP GLN ALA PRO LEU LYS PRO LEU SEQRES 67 A 1287 GLN LYS THR ASP ILE LEU LYS THR TYR THR ILE PRO ARG SEQRES 68 A 1287 LEU ILE TYR ILE ALA ASP HIS SER GLU VAL LYS THR ALA SEQRES 69 A 1287 LEU LEU GLU THR LEU ASP GLN LYS ILE ARG THR ALA VAL SEQRES 70 A 1287 LYS GLU TRP LEU HIS LEU PRO PRO CYS THR CYS ASP ALA SEQRES 71 A 1287 ILE LEU TYR SER SER THR ARG ASP GLY GLY LEU GLY ILE SEQRES 72 A 1287 THR LYS LEU ALA GLY LEU ILE PRO SER VAL GLN ALA ARG SEQRES 73 A 1287 ARG LEU HIS ARG ILE ALA GLN SER SER ASP ASP THR MET SEQRES 74 A 1287 LYS CYS PHE MET GLU LYS GLU LYS MET GLU GLN LEU HIS SEQRES 75 A 1287 LYS LYS LEU TRP ILE GLN ALA GLY GLY ASP ARG GLU ASN SEQRES 76 A 1287 ILE PRO SER ILE TRP GLU ALA PRO PRO SER SER GLU PRO SEQRES 77 A 1287 PRO ASN ASN VAL SER THR ASN SER GLU TRP GLU ALA PRO SEQRES 78 A 1287 THR GLN LYS ASP LYS PHE PRO LYS PRO CYS ASN TRP ARG SEQRES 79 A 1287 LYS ASN GLU PHE LYS LYS TRP THR LYS LEU ALA SER GLN SEQRES 80 A 1287 GLY ARG GLY ILE VAL ASN PHE GLU ARG ASP LYS ILE SER SEQRES 81 A 1287 ASN HIS TRP ILE GLN TYR TYR ARG ARG ILE PRO HIS ARG SEQRES 82 A 1287 LYS LEU LEU THR ALA LEU GLN LEU ARG ALA ASN VAL TYR SEQRES 83 A 1287 PRO THR ARG GLU PHE LEU ALA ARG GLY ARG GLN ASP GLN SEQRES 84 A 1287 TYR ILE LYS ALA CYS ARG HIS CYS ASP ALA ASP ILE GLU SEQRES 85 A 1287 SER CYS ALA HIS ILE ILE GLY ASN CYS PRO VAL THR GLN SEQRES 86 A 1287 ASP ALA ARG ILE LYS ARG HIS ASN TYR ILE CYS GLU LEU SEQRES 87 A 1287 LEU LEU GLU GLU ALA LYS LYS LYS ASP TRP VAL VAL PHE SEQRES 88 A 1287 LYS GLU PRO HIS ILE ARG ASP SER ASN LYS GLU LEU TYR SEQRES 89 A 1287 LYS PRO ASP LEU ILE PHE VAL LYS ASP ALA ARG ALA LEU SEQRES 90 A 1287 VAL VAL ASP VAL THR VAL ARG TYR GLU ALA ALA LYS SER SEQRES 91 A 1287 SER LEU GLU GLU ALA ALA ALA GLU LYS VAL ARG LYS TYR SEQRES 92 A 1287 LYS HIS LEU GLU THR GLU VAL ARG HIS LEU THR ASN ALA SEQRES 93 A 1287 LYS ASP VAL THR PHE VAL GLY PHE PRO LEU GLY ALA ARG SEQRES 94 A 1287 GLY LYS TRP HIS GLN ASP ASN PHE LYS LEU LEU THR GLU SEQRES 95 A 1287 LEU GLY LEU SER LYS SER ARG GLN VAL LYS MET ALA GLU SEQRES 96 A 1287 THR PHE SER THR VAL ALA LEU PHE SER SER VAL ASP ILE SEQRES 97 A 1287 VAL HIS MET PHE ALA SER ARG ALA ARG LYS SER MET VAL SEQRES 98 A 1287 MET GLY GLY SER ASP TYR LYS ASP HIS ASP GLY ASP TYR SEQRES 99 A 1287 LYS ASP HIS ASP ILE ASP TYR LYS ASP ASP ASP ASP LYS SEQRES 1 B 117 G G C A C C U G A U U U G SEQRES 2 B 117 G A C C A A U U C A C G G SEQRES 3 B 117 G A U U U G U C C A A G G SEQRES 4 B 117 U G G A C G G G C C A C C SEQRES 5 B 117 U U U A C U U A A C C C G SEQRES 6 B 117 G A A A A G G A A C A U A SEQRES 7 B 117 U A U A A U U U A U G U G SEQRES 8 B 117 U G U U C G A U A A A U A SEQRES 9 B 117 G C C A A A U G C C U C G SEQRES 1 C 80 DA DT DT DC DA DA DT DG DA DA DG DC DG SEQRES 2 C 80 DC DG DG DG DT DA DA DA DC DG DG DC DG SEQRES 3 C 80 DG DG DA DG DT DA DA DC DT DA DT DG DA SEQRES 4 C 80 DC DT DC DT DC DT DT DA DA DG DG DT DA SEQRES 5 C 80 DG DC DC DA DA DA DT DG DC DC DT DC DG SEQRES 6 C 80 DT DC DA DT DC DT DA DA DT DT DA DG DT SEQRES 7 C 80 DG DA SEQRES 1 D 50 DC DC DT DT DA DA DG DA DG DA DG DT DC SEQRES 2 D 50 DA DT DA DG DT DT DA DC DT DC DC DC DG SEQRES 3 D 50 DC DC DG DT DT DT DA DC DC DC DG DC DG SEQRES 4 D 50 DC DT DT DC DA DT DT DG DA DA DT SEQRES 1 E 31 DT DC DA DC DT DA DA DT DT DA DG DA DT SEQRES 2 E 31 DG DA DC DG DA DG DG DC DA DT DT DT DG SEQRES 3 E 31 DG DC DT DA 2DT HET 2DT E 31 19 HET ZN A1501 1 HET ZN A1502 1 HET ZN A1503 1 HET ZN A1504 1 HET MG A1505 1 HET MG A1506 1 HET TTP A1507 29 HETNAM 2DT 3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM TTP THYMIDINE-5'-TRIPHOSPHATE HETSYN 2DT 2',3'-DIDEOXYTHYMIDINE-5'-MONOPHOSPHATE FORMUL 5 2DT C10 H15 N2 O7 P FORMUL 6 ZN 4(ZN 2+) FORMUL 10 MG 2(MG 2+) FORMUL 12 TTP C10 H17 N2 O14 P3 FORMUL 13 HOH *156(H2 O) HELIX 1 AA1 SER A 241 HIS A 253 1 13 HELIX 2 AA2 ASN A 271 PHE A 279 1 9 HELIX 3 AA3 PRO A 280 CYS A 282 5 3 HELIX 4 AA4 THR A 306 HIS A 318 1 13 HELIX 5 AA5 HIS A 318 GLN A 331 1 14 HELIX 6 AA6 THR A 346 PHE A 360 1 15 HELIX 7 AA7 ASN A 365 ILE A 374 1 10 HELIX 8 AA8 THR A 378 SER A 390 1 13 HELIX 9 AA9 LYS A 551 ASP A 573 1 23 HELIX 10 AB1 ASP A 573 ASP A 584 1 12 HELIX 11 AB2 PRO A 593 THR A 607 1 15 HELIX 12 AB3 ASP A 624 ARG A 629 5 6 HELIX 13 AB4 THR A 633 MET A 644 1 12 HELIX 14 AB5 THR A 656 ASP A 664 1 9 HELIX 15 AB6 PHE A 667 GLY A 681 1 15 HELIX 16 AB7 PRO A 684 VAL A 687 5 4 HELIX 17 AB8 LYS A 700 LYS A 705 1 6 HELIX 18 AB9 ASP A 706 ASN A 708 5 3 HELIX 19 AC1 SER A 717 CYS A 735 1 19 HELIX 20 AC2 ALA A 748 GLU A 767 1 20 HELIX 21 AC3 LYS A 780 VAL A 785 1 6 HELIX 22 AC4 SER A 786 ARG A 797 1 12 HELIX 23 AC5 ASP A 800 TYR A 811 1 12 HELIX 24 AC6 MET A 841 GLY A 861 1 21 HELIX 25 AC7 SER A 886 GLY A 905 1 20 HELIX 26 AC8 GLN A 909 LYS A 912 5 4 HELIX 27 AC9 GLY A 966 GLN A 980 1 15 HELIX 28 AD1 LYS A 984 THR A 996 1 13 HELIX 29 AD2 ILE A 997 ARG A 999 5 3 HELIX 30 AD3 LEU A 1000 SER A 1007 1 8 HELIX 31 AD4 LYS A 1010 LEU A 1029 1 20 HELIX 32 AD5 ASP A 1037 SER A 1042 1 6 HELIX 33 AD6 SER A 1043 GLY A 1047 5 5 HELIX 34 AD7 LYS A 1053 GLN A 1071 1 19 HELIX 35 AD8 ASP A 1074 MET A 1081 1 8 HELIX 36 AD9 GLU A 1082 ALA A 1097 1 16 HELIX 37 AE1 ASN A 1140 LYS A 1151 1 12 HELIX 38 AE2 GLY A 1158 GLU A 1163 5 6 HELIX 39 AE3 ASN A 1169 TYR A 1174 1 6 HELIX 40 AE4 PRO A 1179 ALA A 1191 1 13 HELIX 41 AE5 THR A 1196 ALA A 1201 1 6 HELIX 42 AE6 SER A 1221 ASN A 1228 1 8 HELIX 43 AE7 CYS A 1229 VAL A 1231 5 3 HELIX 44 AE8 THR A 1232 LYS A 1254 1 23 HELIX 45 AE9 SER A 1298 LYS A 1312 1 15 HELIX 46 AF1 LEU A 1314 ASN A 1323 1 10 HELIX 47 AF2 ASP A 1343 LEU A 1351 1 9 HELIX 48 AF3 SER A 1354 ARG A 1383 1 30 SHEET 1 AA1 3 VAL A 221 VAL A 225 0 SHEET 2 AA1 3 VAL A 258 CYS A 262 1 O CYS A 259 N VAL A 223 SHEET 3 AA1 3 GLU A 268 ASN A 269 -1 O ASN A 269 N PHE A 260 SHEET 1 AA2 2 TRP A 295 ILE A 296 0 SHEET 2 AA2 2 ASP A 303 PHE A 304 -1 O PHE A 304 N TRP A 295 SHEET 1 AA3 4 TRP A 710 ILE A 715 0 SHEET 2 AA3 4 GLY A 689 PRO A 696 -1 N ARG A 691 O ILE A 715 SHEET 3 AA3 4 SER A 815 THR A 819 1 O TYR A 817 N THR A 692 SHEET 4 AA3 4 ILE A 829 GLN A 830 -1 O ILE A 829 N THR A 816 SHEET 1 AA4 5 ALA A 873 PHE A 876 0 SHEET 2 AA4 5 ASP A 879 SER A 884 -1 O VAL A 881 N MET A 874 SHEET 3 AA4 5 LEU A 771 ASP A 777 -1 N VAL A 776 O LEU A 880 SHEET 4 AA4 5 HIS A 914 PRO A 920 -1 O HIS A 914 N PHE A 775 SHEET 5 AA4 5 TYR A 925 ILE A 927 -1 O THR A 926 N LYS A 919 SHEET 1 AA5 5 ALA A 873 PHE A 876 0 SHEET 2 AA5 5 ASP A 879 SER A 884 -1 O VAL A 881 N MET A 874 SHEET 3 AA5 5 LEU A 771 ASP A 777 -1 N VAL A 776 O LEU A 880 SHEET 4 AA5 5 HIS A 914 PRO A 920 -1 O HIS A 914 N PHE A 775 SHEET 5 AA5 5 ASN A 941 MET A 942 1 O ASN A 941 N GLY A 915 SHEET 1 AA6 2 TYR A 864 ARG A 866 0 SHEET 2 AA6 2 SER A 869 ILE A 871 -1 O SER A 869 N ARG A 866 SHEET 1 AA7 2 THR A 934 ILE A 935 0 SHEET 2 AA7 2 THR A 938 PRO A 939 -1 O THR A 938 N ILE A 935 SHEET 1 AA8 3 GLU A 949 TYR A 951 0 SHEET 2 AA8 3 LEU A 954 ASP A 957 -1 O PHE A 956 N GLU A 949 SHEET 3 AA8 3 GLY A 961 ILE A 962 -1 O GLY A 961 N ASP A 957 SHEET 1 AA9 4 VAL A1257 LYS A1260 0 SHEET 2 AA9 4 LEU A1276 LYS A1280 -1 O VAL A1279 N VAL A1257 SHEET 3 AA9 4 ARG A1283 ARG A1292 -1 O VAL A1287 N LEU A1276 SHEET 4 AA9 4 ASP A1326 GLY A1335 1 O VAL A1330 N VAL A1286 SHEET 1 AB1 2 ILE A1264 ARG A1265 0 SHEET 2 AB1 2 LEU A1271 TYR A1272 -1 O TYR A1272 N ILE A1264 LINK O3' DA E 30 P 2DT E 31 1555 1555 1.60 LINK SG CYS A 232 ZN ZN A1503 1555 1555 2.29 LINK SG CYS A 235 ZN ZN A1503 1555 1555 2.25 LINK NE2 HIS A 248 ZN ZN A1503 1555 1555 2.04 LINK NE2 HIS A 253 ZN ZN A1503 1555 1555 1.80 LINK SG CYS A 262 ZN ZN A1502 1555 1555 2.30 LINK SG CYS A 265 ZN ZN A1502 1555 1555 2.30 LINK NE2 HIS A 278 ZN ZN A1502 1555 1555 2.15 LINK SG CYS A 282 ZN ZN A1502 1555 1555 2.27 LINK SG CYS A 297 ZN ZN A1504 1555 1555 2.25 LINK SG CYS A 300 ZN ZN A1504 1555 1555 2.24 LINK NE2 HIS A 313 ZN ZN A1504 1555 1555 2.03 LINK NE2 HIS A 318 ZN ZN A1504 1555 1555 2.07 LINK OD1 ASP A 777 MG MG A1505 1555 1555 2.14 LINK O ILE A 778 MG MG A1505 1555 1555 2.18 LINK OD2 ASP A 878 MG MG A1505 1555 1555 2.18 LINK SG CYS A1212 ZN ZN A1501 1555 1555 2.30 LINK SG CYS A1215 ZN ZN A1501 1555 1555 2.26 LINK NE2 HIS A1224 ZN ZN A1501 1555 1555 2.14 LINK SG CYS A1229 ZN ZN A1501 1555 1555 2.29 LINK NE2 HIS A1240 MG MG A1506 1555 1555 2.24 LINK OD2 ASP A1275 MG MG A1506 1555 1555 2.19 LINK O VAL A1289 MG MG A1506 1555 1555 2.26 LINK MG MG A1505 O2A TTP A1507 1555 1555 2.13 LINK MG MG A1505 O2B TTP A1507 1555 1555 2.12 LINK MG MG A1505 O3G TTP A1507 1555 1555 2.14 LINK MG MG A1506 O HOH A1611 1555 1555 2.42 LINK MG MG A1506 O HOH A1663 1555 1555 2.31 CISPEP 1 VAL A 225 PRO A 226 0 -10.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 CONECT 9711664 CONECT 11611664 CONECT 21711664 CONECT 25711664 CONECT 32611663 CONECT 34611663 CONECT 44811663 CONECT 48111663 CONECT 59511665 CONECT 61711665 CONECT 72111665 CONECT 76411665 CONECT 323411666 CONECT 323911666 CONECT 404511666 CONECT 668511662 CONECT 671211662 CONECT 677711662 CONECT 681111662 CONECT 690311667 CONECT 720511667 CONECT 731111667 CONECT1162911642 CONECT1164211629116431164411645 CONECT1164311642 CONECT1164411642 CONECT116451164211656 CONECT11646116471164811659 CONECT116471164611653 CONECT11648116461164911650 CONECT1164911648 CONECT116501164811651 CONECT11651116501165211653 CONECT1165211651 CONECT11653116471165111654 CONECT1165411653 CONECT116551165911660 CONECT116561164511657 CONECT11657116561165811660 CONECT116581165711659 CONECT11659116461165511658 CONECT116601165511657 CONECT11662 6685 6712 6777 6811 CONECT11663 326 346 448 481 CONECT11664 97 116 217 257 CONECT11665 595 617 721 764 CONECT11666 3234 3239 404511670 CONECT116661167411679 CONECT11667 6903 7205 731111707 CONECT1166711759 CONECT1166811669116701167111680 CONECT1166911668 CONECT116701166611668 CONECT116711166811672 CONECT1167211671116731167411675 CONECT1167311672 CONECT116741166611672 CONECT116751167211676 CONECT1167611675116771167811679 CONECT1167711676 CONECT1167811676 CONECT116791166611676 CONECT116801166811681 CONECT116811168011682 CONECT11682116811168311684 CONECT116831168211687 CONECT11684116821168511686 CONECT1168511684 CONECT116861168411687 CONECT11687116831168611688 CONECT11688116871168911696 CONECT11689116881169011691 CONECT1169011689 CONECT116911168911692 CONECT11692116911169311694 CONECT1169311692 CONECT11694116921169511696 CONECT1169511694 CONECT116961168811694 CONECT1170711667 CONECT1175911667 MASTER 707 0 8 48 32 0 0 611806 5 81 122 END