HEADER DNA BINDING PROTEIN/DNA/RNA 06-APR-25 9UDI TITLE CRYO-EM STRUCTURE OF THE RDCAS12N-SGRNA-DNA TERNARY COMPLEX, TITLE 2 CONFORMATION 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RDCAS12N; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (40-MER); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*GP*CP*TP*GP*TP*GP*AP*GP*AP*AP*AP*CP*CP*G)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: SGRNA; COMPND 16 CHAIN: R; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROTHIA DENTOCARIOSA; SOURCE 3 ORGANISM_TAXID: 2047; SOURCE 4 GENE: HXO56_11955; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 4; SOURCE 16 ORGANISM_SCIENTIFIC: ROTHIA DENTOCARIOSA; SOURCE 17 ORGANISM_TAXID: 2047; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRISPR-CAS, COMPLEX, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA-RNA KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR W.FU,Q.JI REVDAT 2 23-JUL-25 9UDI 1 JRNL REVDAT 1 04-JUN-25 9UDI 0 JRNL AUTH W.FU,J.MA,Z.WANG,N.TANG,D.PAN,M.SU,Z.WU,J.GAN,Q.JI JRNL TITL MECHANISMS AND ENGINEERING OF A MINIATURE TYPE V-N JRNL TITL 2 CRISPR-CAS12 EFFECTOR ENZYME. JRNL REF NAT COMMUN V. 16 5667 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40595633 JRNL DOI 10.1038/S41467-025-61290-3 REMARK 2 REMARK 2 RESOLUTION. 3.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.010 REMARK 3 NUMBER OF PARTICLES : 879820 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9UDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-APR-25. REMARK 100 THE DEPOSITION ID IS D_1300057348. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RDCAS12N-SGRNA-DNA COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.28 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 5296 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : TFS FALCON 4I (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ASP A 5 REMARK 465 LYS A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 8 REMARK 465 GLU A 9 REMARK 465 GLU A 10 REMARK 465 GLU A 268 REMARK 465 PRO A 269 REMARK 465 ILE A 270 REMARK 465 ARG A 271 REMARK 465 ARG A 272 REMARK 465 SER A 273 REMARK 465 ALA A 274 REMARK 465 THR A 275 REMARK 465 LYS A 276 REMARK 465 ARG A 277 REMARK 465 ALA A 278 REMARK 465 ARG A 279 REMARK 465 ALA A 280 REMARK 465 ALA A 281 REMARK 465 GLY A 282 REMARK 465 SER A 283 REMARK 465 VAL A 284 REMARK 465 GLY A 285 REMARK 465 VAL A 286 REMARK 465 ASP A 287 REMARK 465 LEU A 288 REMARK 465 GLY A 289 REMARK 465 VAL A 290 REMARK 465 LYS A 291 REMARK 465 TYR A 292 REMARK 465 LEU A 293 REMARK 465 ALA A 294 REMARK 465 SER A 295 REMARK 465 LEU A 296 REMARK 465 SER A 297 REMARK 465 ASP A 298 REMARK 465 SER A 299 REMARK 465 GLU A 300 REMARK 465 ALA A 301 REMARK 465 PRO A 302 REMARK 465 GLN A 303 REMARK 465 ARG A 304 REMARK 465 PHE A 305 REMARK 465 PRO A 306 REMARK 465 ASN A 307 REMARK 465 LEU A 308 REMARK 465 LYS A 309 REMARK 465 PHE A 310 REMARK 465 VAL A 311 REMARK 465 GLU A 312 REMARK 465 GLY A 313 REMARK 465 LEU A 314 REMARK 465 PRO A 315 REMARK 465 SER A 316 REMARK 465 LEU A 317 REMARK 465 GLU A 318 REMARK 465 ASN A 319 REMARK 465 PRO A 320 REMARK 465 ARG A 321 REMARK 465 TRP A 322 REMARK 465 SER A 323 REMARK 465 GLU A 324 REMARK 465 ALA A 325 REMARK 465 SER A 326 REMARK 465 SER A 327 REMARK 465 ARG A 328 REMARK 465 ARG A 329 REMARK 465 LEU A 330 REMARK 465 HIS A 331 REMARK 465 LYS A 332 REMARK 465 LEU A 333 REMARK 465 GLN A 334 REMARK 465 ARG A 335 REMARK 465 ALA A 336 REMARK 465 LEU A 337 REMARK 465 ALA A 338 REMARK 465 ARG A 339 REMARK 465 SER A 340 REMARK 465 GLN A 341 REMARK 465 LYS A 342 REMARK 465 GLY A 343 REMARK 465 SER A 344 REMARK 465 ASN A 345 REMARK 465 ARG A 346 REMARK 465 ARG A 347 REMARK 465 SER A 348 REMARK 465 ARG A 349 REMARK 465 LEU A 350 REMARK 465 VAL A 351 REMARK 465 LYS A 352 REMARK 465 GLN A 353 REMARK 465 ILE A 354 REMARK 465 ALA A 355 REMARK 465 ARG A 356 REMARK 465 LEU A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 MET A 360 REMARK 465 THR A 361 REMARK 465 ALA A 362 REMARK 465 LEU A 363 REMARK 465 ARG A 364 REMARK 465 ARG A 365 REMARK 465 GLU A 366 REMARK 465 SER A 367 REMARK 465 ASN A 368 REMARK 465 LEU A 369 REMARK 465 HIS A 370 REMARK 465 GLN A 371 REMARK 465 LEU A 372 REMARK 465 THR A 373 REMARK 465 LYS A 374 REMARK 465 LYS A 375 REMARK 465 LEU A 376 REMARK 465 ALA A 377 REMARK 465 THR A 378 REMARK 465 GLU A 379 REMARK 465 TYR A 380 REMARK 465 THR A 381 REMARK 465 LEU A 382 REMARK 465 VAL A 383 REMARK 465 GLY A 384 REMARK 465 PHE A 385 REMARK 465 GLU A 386 REMARK 465 ASP A 387 REMARK 465 LEU A 388 REMARK 465 ASN A 389 REMARK 465 VAL A 390 REMARK 465 SER A 391 REMARK 465 GLY A 392 REMARK 465 MET A 393 REMARK 465 THR A 394 REMARK 465 ALA A 395 REMARK 465 SER A 396 REMARK 465 ALA A 397 REMARK 465 LYS A 398 REMARK 465 GLY A 399 REMARK 465 THR A 400 REMARK 465 VAL A 401 REMARK 465 GLU A 402 REMARK 465 ASN A 403 REMARK 465 PRO A 404 REMARK 465 GLY A 405 REMARK 465 LYS A 406 REMARK 465 ASN A 407 REMARK 465 VAL A 408 REMARK 465 ALA A 409 REMARK 465 GLN A 410 REMARK 465 LYS A 411 REMARK 465 SER A 412 REMARK 465 GLY A 413 REMARK 465 LEU A 414 REMARK 465 ASN A 415 REMARK 465 ARG A 416 REMARK 465 VAL A 417 REMARK 465 VAL A 418 REMARK 465 LEU A 419 REMARK 465 ASP A 420 REMARK 465 ALA A 421 REMARK 465 ALA A 422 REMARK 465 PHE A 423 REMARK 465 GLY A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 465 ARG A 427 REMARK 465 ASN A 428 REMARK 465 GLN A 429 REMARK 465 LEU A 430 REMARK 465 GLU A 431 REMARK 465 TYR A 432 REMARK 465 LYS A 433 REMARK 465 ALA A 434 REMARK 465 VAL A 435 REMARK 465 TRP A 436 REMARK 465 TYR A 437 REMARK 465 GLY A 438 REMARK 465 SER A 439 REMARK 465 ALA A 440 REMARK 465 PHE A 441 REMARK 465 GLU A 442 REMARK 465 LYS A 443 REMARK 465 VAL A 444 REMARK 465 ASP A 445 REMARK 465 ARG A 446 REMARK 465 TYR A 447 REMARK 465 PHE A 448 REMARK 465 ALA A 449 REMARK 465 SER A 450 REMARK 465 SER A 451 REMARK 465 GLN A 452 REMARK 465 THR A 453 REMARK 465 CYS A 454 REMARK 465 SER A 455 REMARK 465 GLU A 456 REMARK 465 CYS A 457 REMARK 465 GLY A 458 REMARK 465 ARG A 459 REMARK 465 LYS A 460 REMARK 465 ALA A 461 REMARK 465 LYS A 462 REMARK 465 THR A 463 REMARK 465 LYS A 464 REMARK 465 LEU A 465 REMARK 465 THR A 466 REMARK 465 LEU A 467 REMARK 465 ARG A 468 REMARK 465 ASP A 469 REMARK 465 ARG A 470 REMARK 465 VAL A 471 REMARK 465 PHE A 472 REMARK 465 ASP A 473 REMARK 465 CYS A 474 REMARK 465 ALA A 475 REMARK 465 TYR A 476 REMARK 465 CYS A 477 REMARK 465 GLY A 478 REMARK 465 ASN A 479 REMARK 465 MET A 480 REMARK 465 MET A 481 REMARK 465 ASP A 482 REMARK 465 ARG A 483 REMARK 465 ASP A 484 REMARK 465 LEU A 485 REMARK 465 ASN A 486 REMARK 465 ALA A 487 REMARK 465 ALA A 488 REMARK 465 VAL A 489 REMARK 465 ASN A 490 REMARK 465 ILE A 491 REMARK 465 CYS A 492 REMARK 465 ARG A 493 REMARK 465 GLU A 494 REMARK 465 ALA A 495 REMARK 465 GLN A 496 REMARK 465 ARG A 497 REMARK 465 LEU A 498 REMARK 465 PHE A 499 REMARK 465 ASP A 500 REMARK 465 GLU A 501 REMARK 465 LYS A 502 REMARK 465 LEU A 503 REMARK 465 ALA A 504 REMARK 465 SER A 505 REMARK 465 GLU A 506 REMARK 465 ASP A 507 REMARK 465 ARG A 508 REMARK 465 GLU A 509 REMARK 465 SER A 510 REMARK 465 LEU A 511 REMARK 465 ASN A 512 REMARK 465 GLY A 513 REMARK 465 ARG A 514 REMARK 465 GLY A 515 REMARK 465 SER A 516 REMARK 465 ARG A 517 REMARK 465 GLY A 518 REMARK 465 ALA A 519 REMARK 465 LEU A 520 REMARK 465 ARG A 521 REMARK 465 GLY A 522 REMARK 465 ALA A 523 REMARK 465 GLU A 524 REMARK 465 THR A 525 REMARK 465 VAL A 526 REMARK 465 GLU A 527 REMARK 465 ALA A 528 REMARK 465 SER A 529 REMARK 465 ARG A 530 REMARK 465 PRO A 531 REMARK 465 PRO A 532 REMARK 465 ALA A 533 REMARK 465 SER A 534 REMARK 465 HIS A 535 REMARK 465 ARG A 536 REMARK 465 ARG A 537 REMARK 465 GLY A 538 REMARK 465 SER A 539 REMARK 465 PRO A 540 REMARK 465 DG C -11 REMARK 465 DG C -10 REMARK 465 DC C -9 REMARK 465 DA C -8 REMARK 465 DG C -7 REMARK 465 DT C -6 REMARK 465 DG C -5 REMARK 465 DT C -4 REMARK 465 DT C -3 REMARK 465 DT C -2 REMARK 465 DT C -1 REMARK 465 DC C 0 REMARK 465 DA C 1 REMARK 465 DC C 2 REMARK 465 DT C 3 REMARK 465 DT C 4 REMARK 465 DT C 5 REMARK 465 DC C 6 REMARK 465 DC D 0 REMARK 465 DG D 1 REMARK 465 C R -194 REMARK 465 U R -193 REMARK 465 U R -192 REMARK 465 U R -191 REMARK 465 U R -190 REMARK 465 U R -189 REMARK 465 G R -188 REMARK 465 A R -187 REMARK 465 C R -186 REMARK 465 G R -185 REMARK 465 A R -184 REMARK 465 A R -183 REMARK 465 A R -182 REMARK 465 A R -181 REMARK 465 A R -180 REMARK 465 C R -179 REMARK 465 G R -157 REMARK 465 U R -156 REMARK 465 C R -155 REMARK 465 U R -154 REMARK 465 A R -153 REMARK 465 G R -143 REMARK 465 G R -142 REMARK 465 A R -141 REMARK 465 A R -140 REMARK 465 G R -139 REMARK 465 U R -138 REMARK 465 C R -137 REMARK 465 G R -136 REMARK 465 A R -135 REMARK 465 G R -134 REMARK 465 G R -133 REMARK 465 C R -132 REMARK 465 G R -131 REMARK 465 C R -130 REMARK 465 U R -129 REMARK 465 C R -128 REMARK 465 U R -127 REMARK 465 U R -126 REMARK 465 C R -125 REMARK 465 G R -124 REMARK 465 G R -123 REMARK 465 G R -122 REMARK 465 G R -121 REMARK 465 U R -120 REMARK 465 G R -119 REMARK 465 C R -118 REMARK 465 U R -117 REMARK 465 G R -116 REMARK 465 A R -115 REMARK 465 G R -114 REMARK 465 A R -113 REMARK 465 C R -112 REMARK 465 U R -111 REMARK 465 G R -110 REMARK 465 U R -109 REMARK 465 G R -108 REMARK 465 G R -107 REMARK 465 U R -90 REMARK 465 G R -89 REMARK 465 C R -88 REMARK 465 G R -87 REMARK 465 A R -86 REMARK 465 G R -85 REMARK 465 U R -84 REMARK 465 C R -83 REMARK 465 A R -82 REMARK 465 U R -81 REMARK 465 C R -80 REMARK 465 G R -79 REMARK 465 U R -78 REMARK 465 A R -77 REMARK 465 U R -38 REMARK 465 G R -37 REMARK 465 C R -36 REMARK 465 A R -35 REMARK 465 U R -34 REMARK 465 U R -33 REMARK 465 A R -32 REMARK 465 U R -31 REMARK 465 G R -30 REMARK 465 C R -29 REMARK 465 A R -28 REMARK 465 C R -27 REMARK 465 G R -26 REMARK 465 C R -25 REMARK 465 G R -24 REMARK 465 A R -23 REMARK 465 A R -22 REMARK 465 A R -21 REMARK 465 G R -20 REMARK 465 C R -19 REMARK 465 G R -18 REMARK 465 U R -17 REMARK 465 G R -16 REMARK 465 U R -15 REMARK 465 G R -14 REMARK 465 C R -13 REMARK 465 G R 10 REMARK 465 A R 11 REMARK 465 A R 12 REMARK 465 A R 13 REMARK 465 G R 14 REMARK 465 U R 15 REMARK 465 G R 16 REMARK 465 A R 17 REMARK 465 A R 18 REMARK 465 A R 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 ILE A 66 CG1 CG2 CD1 REMARK 470 ASP A 68 CG OD1 OD2 REMARK 470 ASP A 70 CG OD1 OD2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 ASN A 114 CG OD1 ND2 REMARK 470 GLU A 116 CG CD OE1 OE2 REMARK 470 ASP A 117 CG OD1 OD2 REMARK 470 ASN A 123 CG OD1 ND2 REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 THR A 126 OG1 CG2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 A R-152 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 183 OP1 U R 3 2.12 REMARK 500 O2 U R -144 O6 G R -104 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 100 CA - N - CD ANGL. DEV. = -10.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 83 3.61 -62.75 REMARK 500 TYR A 85 32.01 -96.74 REMARK 500 GLU A 116 -175.05 -172.13 REMARK 500 GLN A 124 51.39 -90.19 REMARK 500 THR A 161 -72.47 -64.21 REMARK 500 SER A 183 142.85 -171.83 REMARK 500 PRO A 189 38.92 -81.51 REMARK 500 TYR A 195 127.49 -36.52 REMARK 500 SER A 222 -128.53 33.09 REMARK 500 ASN A 231 -166.51 -78.84 REMARK 500 ALA A 242 2.05 -151.12 REMARK 500 ALA A 255 -102.86 59.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-64070 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE RDCAS12N-SGRNA-DNA TERNARY COMPLEX, REMARK 900 CONFORMATION 2 DBREF1 9UDI A 1 540 UNP A0A7D4LAR1_9MICC DBREF2 9UDI A A0A7D4LAR1 1 540 DBREF 9UDI C -11 28 PDB 9UDI 9UDI -11 28 DBREF 9UDI D -12 1 PDB 9UDI 9UDI -12 1 DBREF 9UDI R -194 19 PDB 9UDI 9UDI -194 19 SEQRES 1 A 540 MET ALA THR THR ASP LYS LYS ASP GLU GLU ASN LEU ARG SEQRES 2 A 540 ALA TYR LYS PHE ARG LEU ASP PRO ASN GLN ALA GLN THR SEQRES 3 A 540 THR ALA LEU TYR GLN ALA VAL GLY ALA ALA ARG TYR THR SEQRES 4 A 540 TYR ASN MET LEU THR ALA TYR ASN LEU GLU VAL ASN ARG SEQRES 5 A 540 LEU ARG ASP ASP TYR TRP LYS ARG ARG HIS ASP GLU ASP SEQRES 6 A 540 ILE SER ASP ALA ASP ILE LYS LYS GLU LEU ASN ALA LEU SEQRES 7 A 540 ALA LYS GLU ASP LYS ARG TYR LYS GLN LEU ASN TYR GLY SEQRES 8 A 540 ALA PHE GLY THR GLN TYR LEU THR PRO GLU LYS LYS ARG SEQRES 9 A 540 HIS GLU GLN ALA GLU HIS ARG ILE GLU ASN GLY GLU ASP SEQRES 10 A 540 PRO SER VAL VAL TRP ASN GLN GLU THR GLU ARG SER ALA SEQRES 11 A 540 ASN PRO TRP LEU HIS THR ALA ASN GLN ARG VAL LEU VAL SEQRES 12 A 540 SER GLY LEU GLN ASN ALA SER ASP ALA TRP ASP ASN PHE SEQRES 13 A 540 TRP ALA SER ARG THR GLY LYS ARG ALA GLY ARG LEU VAL SEQRES 14 A 540 GLY THR PRO ARG PHE LYS LYS LYS GLY VAL SER ARG ASP SEQRES 15 A 540 SER PHE THR VAL PRO ALA PRO GLU LYS MET GLY ALA TYR SEQRES 16 A 540 GLY THR ALA TYR LEU ARG GLY GLU PRO ALA TYR LYS GLN SEQRES 17 A 540 GLY ARG ARG LYS ILE THR ASP TYR ARG HIS VAL ARG LEU SEQRES 18 A 540 SER TYR LEU GLY THR ILE ARG THR PHE ASN SER THR LYS SEQRES 19 A 540 PRO LEU VAL LYS ALA VAL VAL ALA GLY ALA LYS ILE ARG SEQRES 20 A 540 SER TYR THR VAL SER ARG ASN ALA ASP ARG TRP TYR VAL SEQRES 21 A 540 SER PHE LEU VAL LYS PHE SER GLU PRO ILE ARG ARG SER SEQRES 22 A 540 ALA THR LYS ARG ALA ARG ALA ALA GLY SER VAL GLY VAL SEQRES 23 A 540 ASP LEU GLY VAL LYS TYR LEU ALA SER LEU SER ASP SER SEQRES 24 A 540 GLU ALA PRO GLN ARG PHE PRO ASN LEU LYS PHE VAL GLU SEQRES 25 A 540 GLY LEU PRO SER LEU GLU ASN PRO ARG TRP SER GLU ALA SEQRES 26 A 540 SER SER ARG ARG LEU HIS LYS LEU GLN ARG ALA LEU ALA SEQRES 27 A 540 ARG SER GLN LYS GLY SER ASN ARG ARG SER ARG LEU VAL SEQRES 28 A 540 LYS GLN ILE ALA ARG LEU HIS HIS MET THR ALA LEU ARG SEQRES 29 A 540 ARG GLU SER ASN LEU HIS GLN LEU THR LYS LYS LEU ALA SEQRES 30 A 540 THR GLU TYR THR LEU VAL GLY PHE GLU ASP LEU ASN VAL SEQRES 31 A 540 SER GLY MET THR ALA SER ALA LYS GLY THR VAL GLU ASN SEQRES 32 A 540 PRO GLY LYS ASN VAL ALA GLN LYS SER GLY LEU ASN ARG SEQRES 33 A 540 VAL VAL LEU ASP ALA ALA PHE GLY VAL PHE ARG ASN GLN SEQRES 34 A 540 LEU GLU TYR LYS ALA VAL TRP TYR GLY SER ALA PHE GLU SEQRES 35 A 540 LYS VAL ASP ARG TYR PHE ALA SER SER GLN THR CYS SER SEQRES 36 A 540 GLU CYS GLY ARG LYS ALA LYS THR LYS LEU THR LEU ARG SEQRES 37 A 540 ASP ARG VAL PHE ASP CYS ALA TYR CYS GLY ASN MET MET SEQRES 38 A 540 ASP ARG ASP LEU ASN ALA ALA VAL ASN ILE CYS ARG GLU SEQRES 39 A 540 ALA GLN ARG LEU PHE ASP GLU LYS LEU ALA SER GLU ASP SEQRES 40 A 540 ARG GLU SER LEU ASN GLY ARG GLY SER ARG GLY ALA LEU SEQRES 41 A 540 ARG GLY ALA GLU THR VAL GLU ALA SER ARG PRO PRO ALA SEQRES 42 A 540 SER HIS ARG ARG GLY SER PRO SEQRES 1 C 40 DG DG DC DA DG DT DG DT DT DT DT DC DA SEQRES 2 C 40 DC DT DT DT DC DA DC DC DT DG DA DA DC SEQRES 3 C 40 DC DG DG DT DT DT DC DT DC DA DC DA DG SEQRES 4 C 40 DC SEQRES 1 D 14 DG DC DT DG DT DG DA DG DA DA DA DC DC SEQRES 2 D 14 DG SEQRES 1 R 214 C U U U U U G A C G A A A SEQRES 2 R 214 A A C U C G C C U C A G A SEQRES 3 R 214 A G A U A G G G A G A G U SEQRES 4 R 214 C U A A A C G G A C G U G SEQRES 5 R 214 G A A G U C G A G G C G C SEQRES 6 R 214 U C U U C G G G G U G C U SEQRES 7 R 214 G A G A C U G U G G A A G SEQRES 8 R 214 C G U C A A G A C C A C C SEQRES 9 R 214 U G C G A G U C A U C G U SEQRES 10 R 214 A G A G G G U C A C C G U SEQRES 11 R 214 A G A U G A G U A A U C A SEQRES 12 R 214 U C U G C C C A U C U A U SEQRES 13 R 214 U G C A U U A U G C A C G SEQRES 14 R 214 C G A A A G C G U G U G C SEQRES 15 R 214 A U G G G U G G U U C C C SEQRES 16 R 214 G G U U C A G G U G A A A SEQRES 17 R 214 G U G A A A HELIX 1 AA1 ASN A 22 ARG A 61 1 40 HELIX 2 AA2 SER A 67 LEU A 78 1 12 HELIX 3 AA3 ASP A 82 LYS A 86 5 5 HELIX 4 AA4 ASN A 89 LEU A 98 1 10 HELIX 5 AA5 LEU A 98 ARG A 111 1 14 HELIX 6 AA6 ASN A 138 THR A 161 1 24 HELIX 7 AA7 GLU A 203 GLN A 208 1 6 HELIX 8 AA8 THR A 233 VAL A 241 1 9 SHEET 1 AA1 4 TYR A 15 ARG A 18 0 SHEET 2 AA1 4 ARG A 257 LYS A 265 -1 O VAL A 260 N PHE A 17 SHEET 3 AA1 4 LYS A 245 ASN A 254 -1 N ASN A 254 O ARG A 257 SHEET 4 AA1 4 SER A 183 PRO A 187 -1 N PHE A 184 O VAL A 251 SHEET 1 AA2 3 MET A 192 GLY A 193 0 SHEET 2 AA2 3 HIS A 218 LEU A 221 -1 O ARG A 220 N GLY A 193 SHEET 3 AA2 3 THR A 226 ARG A 228 -1 O ILE A 227 N VAL A 219 CISPEP 1 ALA A 188 PRO A 189 0 4.93 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2026 SER A 267 TER 2472 DC C 28 TER 2723 DC D -1 TER 4990 U R 9 MASTER 603 0 0 8 7 0 0 6 4986 4 0 65 END