HEADER HYDROLASE 09-APR-25 9UEO TITLE CO-CRYSTAL STRUCTURE OF MTB CDNP WITH ARABINOSE-DERIVED 2'3'-CGAMP TITLE 2 (AR-CGAMP) ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL OLIGORIBONUCLEASE AND PAP PHOSPHATASE NRNA; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE,3'-PHOSPHOADENOSINE 5'- COMPND 5 PHOSPHATE PHOSPHATASE,PAP PHOSPHATASE,NANORNASE; COMPND 6 EC: 3.1.-.-,3.1.3.7; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 GENE: NRNA, RV2837C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MYCOBACTERIUM TUBERCULOSIS CDNP INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.D.HANUMAN,K.NITIN,E.RAJAKUMARA REVDAT 1 16-SEP-26 9UEO 0 JRNL AUTH D.S.HANUMAN,S.NEEHARIKA,K.NITIN,S.ABHISHEK,K.M.SINHA, JRNL AUTH 2 E.RAJAKUMARA JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO THE ARABINOSE AND JRNL TITL 2 XYLOSE DERIVATIVES OF CYCLIC-GAMP-MEDIATED INHIBITION OF JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS CYCLIC-DI-AMP PHOSPHODIESTERASE. JRNL REF BIOCHEMISTRY V. 65 2441 2026 JRNL REFN ISSN 0006-2960 JRNL PMID 42206963 JRNL DOI 10.1021/ACS.BIOCHEM.6C00106 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.1_5286: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1388 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-25. REMARK 100 THE DEPOSITION ID IS D_1300056113. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-FEB-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54179 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29097 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 51.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.20000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TACSIMATE PH 6.0 (6 % V/V), 10 MM MES REMARK 280 MONOHYDRATE PH 6.0, POLYETHYLENE GLYCOL 4000 (25 % W/V), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.20000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.70000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.70000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.20000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.46000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.70000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.46000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.20000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -78.40000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 74.46000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ILE A 4 REMARK 465 ASP A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 GLY A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 ALA A 17 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 ILE B 4 REMARK 465 ASP B 5 REMARK 465 PRO B 6 REMARK 465 ARG B 7 REMARK 465 SER B 8 REMARK 465 GLU B 9 REMARK 465 LEU B 10 REMARK 465 VAL B 11 REMARK 465 ASP B 12 REMARK 465 GLY B 13 REMARK 465 ARG B 14 REMARK 465 ARG B 15 REMARK 465 ARG B 16 REMARK 465 ALA B 17 REMARK 465 GLY B 18 REMARK 465 MET C 1 REMARK 465 THR C 2 REMARK 465 THR C 3 REMARK 465 ILE C 4 REMARK 465 ASP C 5 REMARK 465 PRO C 6 REMARK 465 ARG C 7 REMARK 465 SER C 8 REMARK 465 GLU C 9 REMARK 465 LEU C 10 REMARK 465 VAL C 11 REMARK 465 ASP C 12 REMARK 465 GLY C 13 REMARK 465 ARG C 14 REMARK 465 ARG C 15 REMARK 465 ARG C 16 REMARK 465 ALA C 17 REMARK 465 GLY C 18 REMARK 465 GLY C 336 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 ALA A 133 CB REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 SER A 259 OG REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 ARG A 288 CZ NH1 NH2 REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 24 CG1 CG2 REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 81 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 124 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 ARG B 252 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 262 CG1 CG2 REMARK 470 VAL C 24 CG1 CG2 REMARK 470 ARG C 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 78 CG CD OE1 OE2 REMARK 470 CYS C 86 SG REMARK 470 ARG C 91 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 96 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 98 CG OD1 OD2 REMARK 470 ASP C 111 CG OD1 OD2 REMARK 470 SER C 122 OG REMARK 470 LYS C 164 CG CD CE NZ REMARK 470 GLU C 237 CG CD OE1 OE2 REMARK 470 ARG C 252 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 313 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 211 NE CZ NH1 NH2 REMARK 480 ARG B 20 NE CZ NH1 NH2 REMARK 480 ARG B 270 CZ NH1 NH2 REMARK 480 ARG C 112 CG CD NE REMARK 480 ARG C 169 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 73 -164.24 -78.40 REMARK 500 LEU A 113 -129.96 -84.69 REMARK 500 ASP A 121 -148.18 -90.45 REMARK 500 SER A 122 -156.82 55.97 REMARK 500 THR A 297 -31.35 -135.86 REMARK 500 PRO B 73 -164.25 -78.26 REMARK 500 SER B 134 3.64 -69.75 REMARK 500 PRO C 73 -164.57 -78.05 REMARK 500 THR C 297 -32.98 -134.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 47 OD2 REMARK 620 2 ASP A 106 OD1 76.5 REMARK 620 3 ASP A 181 OD2 69.7 135.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 106 OD2 REMARK 620 2 ASP B 181 OD1 131.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 47 OD2 REMARK 620 2 ASP C 106 OD1 78.4 REMARK 620 3 ASP C 106 OD2 100.1 47.6 REMARK 620 4 ASP C 181 OD2 71.8 130.5 171.6 REMARK 620 N 1 2 3 DBREF 9UEO A 1 336 UNP P71615 NRNA_MYCTU 1 336 DBREF 9UEO B 1 336 UNP P71615 NRNA_MYCTU 1 336 DBREF 9UEO C 1 336 UNP P71615 NRNA_MYCTU 1 336 SEQRES 1 A 336 MET THR THR ILE ASP PRO ARG SER GLU LEU VAL ASP GLY SEQRES 2 A 336 ARG ARG ARG ALA GLY ALA ARG VAL ASP ALA VAL GLY ALA SEQRES 3 A 336 ALA ALA LEU LEU SER ALA ALA ALA ARG VAL GLY VAL VAL SEQRES 4 A 336 CYS HIS VAL HIS PRO ASP ALA ASP THR ILE GLY ALA GLY SEQRES 5 A 336 LEU ALA LEU ALA LEU VAL LEU ASP GLY CYS GLY LYS ARG SEQRES 6 A 336 VAL GLU VAL SER PHE ALA ALA PRO ALA THR LEU PRO GLU SEQRES 7 A 336 SER LEU ARG SER LEU PRO GLY CYS HIS LEU LEU VAL ARG SEQRES 8 A 336 PRO GLU VAL MET ARG ARG ASP VAL ASP LEU VAL VAL THR SEQRES 9 A 336 VAL ASP ILE PRO SER VAL ASP ARG LEU GLY ALA LEU GLY SEQRES 10 A 336 ASP LEU THR ASP SER GLY ARG GLU LEU LEU VAL ILE ASP SEQRES 11 A 336 HIS HIS ALA SER ASN ASP LEU PHE GLY THR ALA ASN PHE SEQRES 12 A 336 ILE ASP PRO SER ALA ASP SER THR THR THR MET VAL ALA SEQRES 13 A 336 GLU ILE LEU ASP ALA TRP GLY LYS PRO ILE ASP PRO ARG SEQRES 14 A 336 VAL ALA HIS CYS ILE TYR ALA GLY LEU ALA THR ASP THR SEQRES 15 A 336 GLY SER PHE ARG TRP ALA SER VAL ARG GLY TYR ARG LEU SEQRES 16 A 336 ALA ALA ARG LEU VAL GLU ILE GLY VAL ASP ASN ALA THR SEQRES 17 A 336 VAL SER ARG THR LEU MET ASP SER HIS PRO PHE THR TRP SEQRES 18 A 336 LEU PRO LEU LEU SER ARG VAL LEU GLY SER ALA GLN LEU SEQRES 19 A 336 VAL SER GLU ALA VAL GLY GLY ARG GLY LEU VAL TYR VAL SEQRES 20 A 336 VAL VAL ASP ASN ARG GLU TRP VAL ALA ALA ARG SER GLU SEQRES 21 A 336 GLU VAL GLU SER ILE VAL ASP ILE VAL ARG THR THR GLN SEQRES 22 A 336 GLN ALA GLU VAL ALA ALA VAL PHE LYS GLU VAL GLU PRO SEQRES 23 A 336 HIS ARG TRP SER VAL SER MET ARG ALA LYS THR VAL ASN SEQRES 24 A 336 LEU ALA ALA VAL ALA SER GLY PHE GLY GLY GLY GLY HIS SEQRES 25 A 336 ARG LEU ALA ALA GLY TYR THR THR THR GLY SER ILE ASP SEQRES 26 A 336 ASP ALA VAL ALA SER LEU ARG ALA ALA LEU GLY SEQRES 1 B 336 MET THR THR ILE ASP PRO ARG SER GLU LEU VAL ASP GLY SEQRES 2 B 336 ARG ARG ARG ALA GLY ALA ARG VAL ASP ALA VAL GLY ALA SEQRES 3 B 336 ALA ALA LEU LEU SER ALA ALA ALA ARG VAL GLY VAL VAL SEQRES 4 B 336 CYS HIS VAL HIS PRO ASP ALA ASP THR ILE GLY ALA GLY SEQRES 5 B 336 LEU ALA LEU ALA LEU VAL LEU ASP GLY CYS GLY LYS ARG SEQRES 6 B 336 VAL GLU VAL SER PHE ALA ALA PRO ALA THR LEU PRO GLU SEQRES 7 B 336 SER LEU ARG SER LEU PRO GLY CYS HIS LEU LEU VAL ARG SEQRES 8 B 336 PRO GLU VAL MET ARG ARG ASP VAL ASP LEU VAL VAL THR SEQRES 9 B 336 VAL ASP ILE PRO SER VAL ASP ARG LEU GLY ALA LEU GLY SEQRES 10 B 336 ASP LEU THR ASP SER GLY ARG GLU LEU LEU VAL ILE ASP SEQRES 11 B 336 HIS HIS ALA SER ASN ASP LEU PHE GLY THR ALA ASN PHE SEQRES 12 B 336 ILE ASP PRO SER ALA ASP SER THR THR THR MET VAL ALA SEQRES 13 B 336 GLU ILE LEU ASP ALA TRP GLY LYS PRO ILE ASP PRO ARG SEQRES 14 B 336 VAL ALA HIS CYS ILE TYR ALA GLY LEU ALA THR ASP THR SEQRES 15 B 336 GLY SER PHE ARG TRP ALA SER VAL ARG GLY TYR ARG LEU SEQRES 16 B 336 ALA ALA ARG LEU VAL GLU ILE GLY VAL ASP ASN ALA THR SEQRES 17 B 336 VAL SER ARG THR LEU MET ASP SER HIS PRO PHE THR TRP SEQRES 18 B 336 LEU PRO LEU LEU SER ARG VAL LEU GLY SER ALA GLN LEU SEQRES 19 B 336 VAL SER GLU ALA VAL GLY GLY ARG GLY LEU VAL TYR VAL SEQRES 20 B 336 VAL VAL ASP ASN ARG GLU TRP VAL ALA ALA ARG SER GLU SEQRES 21 B 336 GLU VAL GLU SER ILE VAL ASP ILE VAL ARG THR THR GLN SEQRES 22 B 336 GLN ALA GLU VAL ALA ALA VAL PHE LYS GLU VAL GLU PRO SEQRES 23 B 336 HIS ARG TRP SER VAL SER MET ARG ALA LYS THR VAL ASN SEQRES 24 B 336 LEU ALA ALA VAL ALA SER GLY PHE GLY GLY GLY GLY HIS SEQRES 25 B 336 ARG LEU ALA ALA GLY TYR THR THR THR GLY SER ILE ASP SEQRES 26 B 336 ASP ALA VAL ALA SER LEU ARG ALA ALA LEU GLY SEQRES 1 C 336 MET THR THR ILE ASP PRO ARG SER GLU LEU VAL ASP GLY SEQRES 2 C 336 ARG ARG ARG ALA GLY ALA ARG VAL ASP ALA VAL GLY ALA SEQRES 3 C 336 ALA ALA LEU LEU SER ALA ALA ALA ARG VAL GLY VAL VAL SEQRES 4 C 336 CYS HIS VAL HIS PRO ASP ALA ASP THR ILE GLY ALA GLY SEQRES 5 C 336 LEU ALA LEU ALA LEU VAL LEU ASP GLY CYS GLY LYS ARG SEQRES 6 C 336 VAL GLU VAL SER PHE ALA ALA PRO ALA THR LEU PRO GLU SEQRES 7 C 336 SER LEU ARG SER LEU PRO GLY CYS HIS LEU LEU VAL ARG SEQRES 8 C 336 PRO GLU VAL MET ARG ARG ASP VAL ASP LEU VAL VAL THR SEQRES 9 C 336 VAL ASP ILE PRO SER VAL ASP ARG LEU GLY ALA LEU GLY SEQRES 10 C 336 ASP LEU THR ASP SER GLY ARG GLU LEU LEU VAL ILE ASP SEQRES 11 C 336 HIS HIS ALA SER ASN ASP LEU PHE GLY THR ALA ASN PHE SEQRES 12 C 336 ILE ASP PRO SER ALA ASP SER THR THR THR MET VAL ALA SEQRES 13 C 336 GLU ILE LEU ASP ALA TRP GLY LYS PRO ILE ASP PRO ARG SEQRES 14 C 336 VAL ALA HIS CYS ILE TYR ALA GLY LEU ALA THR ASP THR SEQRES 15 C 336 GLY SER PHE ARG TRP ALA SER VAL ARG GLY TYR ARG LEU SEQRES 16 C 336 ALA ALA ARG LEU VAL GLU ILE GLY VAL ASP ASN ALA THR SEQRES 17 C 336 VAL SER ARG THR LEU MET ASP SER HIS PRO PHE THR TRP SEQRES 18 C 336 LEU PRO LEU LEU SER ARG VAL LEU GLY SER ALA GLN LEU SEQRES 19 C 336 VAL SER GLU ALA VAL GLY GLY ARG GLY LEU VAL TYR VAL SEQRES 20 C 336 VAL VAL ASP ASN ARG GLU TRP VAL ALA ALA ARG SER GLU SEQRES 21 C 336 GLU VAL GLU SER ILE VAL ASP ILE VAL ARG THR THR GLN SEQRES 22 C 336 GLN ALA GLU VAL ALA ALA VAL PHE LYS GLU VAL GLU PRO SEQRES 23 C 336 HIS ARG TRP SER VAL SER MET ARG ALA LYS THR VAL ASN SEQRES 24 C 336 LEU ALA ALA VAL ALA SER GLY PHE GLY GLY GLY GLY HIS SEQRES 25 C 336 ARG LEU ALA ALA GLY TYR THR THR THR GLY SER ILE ASP SEQRES 26 C 336 ASP ALA VAL ALA SER LEU ARG ALA ALA LEU GLY HET 9UH A 401 45 HET MN A 402 1 HET EDO A 403 4 HET 9UH B 401 45 HET MN B 402 1 HET 9UH C 401 45 HET MN C 402 1 HETNAM 9UH (2R,5R,7R,8S,10R,12AR,14R,15R,15AS,16R)-7-(2-AMINO-6- HETNAM 2 9UH OXO-1,6-DIHYDRO-9H-PURIN-9-YL)-14-(6-AMINO-9H-PURIN-9- HETNAM 3 9UH YL)-2,10,15,16-TETRAHYDROXYOCTAHYDRO-2H,10H,12H-5,8- HETNAM 4 9UH METHANO-2LAMBDA~5~,10LAMBDA~5~-FURO[3,2-L][1,3,6,9,11, HETNAM 5 9UH 2,10]PENTAOXADIPHOSPHACYCLOTETRADECINE-2,10-DIONE HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 9UH 3(C20 H24 N10 O13 P2) FORMUL 5 MN 3(MN 2+) FORMUL 6 EDO C2 H6 O2 FORMUL 11 HOH *77(H2 O) HELIX 1 AA1 ASP A 22 ALA A 33 1 12 HELIX 2 AA2 ASP A 45 CYS A 62 1 18 HELIX 3 AA3 PRO A 77 LEU A 83 5 7 HELIX 4 AA4 GLY A 85 LEU A 89 5 5 HELIX 5 AA5 SER A 109 LEU A 113 5 5 HELIX 6 AA6 LEU A 116 ASP A 121 5 6 HELIX 7 AA7 SER A 150 GLY A 163 1 14 HELIX 8 AA8 ASP A 167 THR A 182 1 16 HELIX 9 AA9 SER A 189 GLY A 203 1 15 HELIX 10 AB1 ASP A 205 ASP A 215 1 11 HELIX 11 AB2 THR A 220 SER A 231 1 12 HELIX 12 AB3 GLU A 237 ARG A 242 1 6 HELIX 13 AB4 ASP A 250 ALA A 257 1 8 HELIX 14 AB5 ARG A 258 SER A 264 1 7 HELIX 15 AB6 ILE A 265 ARG A 270 1 6 HELIX 16 AB7 ASN A 299 GLY A 306 1 8 HELIX 17 AB8 SER A 323 GLY A 336 1 14 HELIX 18 AB9 ASP B 22 ALA B 33 1 12 HELIX 19 AC1 ASP B 45 CYS B 62 1 18 HELIX 20 AC2 PRO B 77 LEU B 83 5 7 HELIX 21 AC3 GLY B 85 LEU B 89 5 5 HELIX 22 AC4 VAL B 110 THR B 120 5 11 HELIX 23 AC5 SER B 150 GLY B 163 1 14 HELIX 24 AC6 ASP B 167 THR B 182 1 16 HELIX 25 AC7 SER B 189 GLY B 203 1 15 HELIX 26 AC8 ASP B 205 ASP B 215 1 11 HELIX 27 AC9 THR B 220 GLY B 230 1 11 HELIX 28 AD1 ASP B 250 ALA B 257 1 8 HELIX 29 AD2 ARG B 258 SER B 264 1 7 HELIX 30 AD3 ILE B 265 ARG B 270 1 6 HELIX 31 AD4 ASN B 299 GLY B 306 1 8 HELIX 32 AD5 SER B 323 GLY B 336 1 14 HELIX 33 AD6 ASP C 22 ALA C 33 1 12 HELIX 34 AD7 ASP C 45 CYS C 62 1 18 HELIX 35 AD8 PRO C 77 LEU C 83 5 7 HELIX 36 AD9 GLY C 85 LEU C 89 5 5 HELIX 37 AE1 ARG C 91 MET C 95 5 5 HELIX 38 AE2 SER C 109 ASP C 121 5 13 HELIX 39 AE3 SER C 150 GLY C 163 1 14 HELIX 40 AE4 ASP C 167 THR C 182 1 16 HELIX 41 AE5 SER C 189 GLY C 203 1 15 HELIX 42 AE6 ASP C 205 ASP C 215 1 11 HELIX 43 AE7 THR C 220 SER C 231 1 12 HELIX 44 AE8 ASP C 250 ALA C 257 1 8 HELIX 45 AE9 ARG C 258 SER C 264 1 7 HELIX 46 AF1 ILE C 265 ARG C 270 1 6 HELIX 47 AF2 ASN C 299 GLY C 306 1 8 HELIX 48 AF3 SER C 323 LEU C 335 1 13 SHEET 1 AA1 5 ARG A 65 PHE A 70 0 SHEET 2 AA1 5 ARG A 35 CYS A 40 1 N VAL A 38 O GLU A 67 SHEET 3 AA1 5 LEU A 101 VAL A 105 1 O VAL A 103 N VAL A 39 SHEET 4 AA1 5 GLU A 125 ASP A 130 1 O LEU A 127 N VAL A 102 SHEET 5 AA1 5 ALA A 141 ILE A 144 1 O PHE A 143 N VAL A 128 SHEET 1 AA2 6 GLN A 233 VAL A 235 0 SHEET 2 AA2 6 LEU A 244 VAL A 249 -1 O LEU A 244 N VAL A 235 SHEET 3 AA2 6 VAL A 277 GLU A 285 1 O PHE A 281 N VAL A 249 SHEET 4 AA2 6 ARG A 288 ALA A 295 -1 O SER A 290 N LYS A 282 SHEET 5 AA2 6 ALA A 315 THR A 321 -1 O THR A 320 N TRP A 289 SHEET 6 AA2 6 GLY A 310 GLY A 311 -1 N GLY A 310 O GLY A 317 SHEET 1 AA3 5 ARG B 65 PHE B 70 0 SHEET 2 AA3 5 ARG B 35 CYS B 40 1 N VAL B 36 O ARG B 65 SHEET 3 AA3 5 LEU B 101 VAL B 105 1 O VAL B 103 N VAL B 39 SHEET 4 AA3 5 GLU B 125 ASP B 130 1 O ILE B 129 N THR B 104 SHEET 5 AA3 5 ALA B 141 ILE B 144 1 O PHE B 143 N VAL B 128 SHEET 1 AA4 6 GLN B 233 VAL B 235 0 SHEET 2 AA4 6 LEU B 244 VAL B 249 -1 O LEU B 244 N VAL B 235 SHEET 3 AA4 6 VAL B 277 GLU B 285 1 O PHE B 281 N VAL B 249 SHEET 4 AA4 6 ARG B 288 ALA B 295 -1 O SER B 290 N LYS B 282 SHEET 5 AA4 6 ALA B 315 THR B 321 -1 O THR B 320 N TRP B 289 SHEET 6 AA4 6 GLY B 310 GLY B 311 -1 N GLY B 310 O GLY B 317 SHEET 1 AA5 5 ARG C 65 PHE C 70 0 SHEET 2 AA5 5 ARG C 35 CYS C 40 1 N VAL C 38 O GLU C 67 SHEET 3 AA5 5 LEU C 101 VAL C 105 1 O VAL C 103 N GLY C 37 SHEET 4 AA5 5 GLU C 125 ASP C 130 1 O ILE C 129 N THR C 104 SHEET 5 AA5 5 ALA C 141 ILE C 144 1 O PHE C 143 N VAL C 128 SHEET 1 AA6 6 GLN C 233 VAL C 235 0 SHEET 2 AA6 6 LEU C 244 VAL C 249 -1 O LEU C 244 N VAL C 235 SHEET 3 AA6 6 VAL C 277 GLU C 285 1 O PHE C 281 N VAL C 249 SHEET 4 AA6 6 ARG C 288 ALA C 295 -1 O ARG C 294 N ALA C 278 SHEET 5 AA6 6 ALA C 315 THR C 321 -1 O THR C 320 N TRP C 289 SHEET 6 AA6 6 GLY C 310 GLY C 311 -1 N GLY C 310 O GLY C 317 LINK OD2 ASP A 47 MN MN A 402 1555 1555 2.67 LINK OD1 ASP A 106 MN MN A 402 1555 1555 2.59 LINK OD2 ASP A 181 MN MN A 402 1555 1555 2.19 LINK OD2 ASP B 106 MN MN B 402 1555 1555 2.55 LINK OD1 ASP B 181 MN MN B 402 1555 1555 2.66 LINK OD2 ASP C 47 MN MN C 402 1555 1555 2.57 LINK OD1 ASP C 106 MN MN C 402 1555 1555 2.69 LINK OD2 ASP C 106 MN MN C 402 1555 1555 2.74 LINK OD2 ASP C 181 MN MN C 402 1555 1555 2.21 CISPEP 1 ALA A 72 PRO A 73 0 -1.27 CISPEP 2 ALA B 72 PRO B 73 0 -1.23 CISPEP 3 ALA C 72 PRO C 73 0 -1.71 CRYST1 78.400 148.920 159.400 90.00 90.00 90.00 I 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006274 0.00000 CONECT 194 6975 CONECT 621 6975 CONECT 1178 6975 CONECT 2931 7025 CONECT 3477 7025 CONECT 4829 7071 CONECT 5234 7071 CONECT 5235 7071 CONECT 5784 7071 CONECT 6930 6933 6934 CONECT 6931 6932 CONECT 6932 6931 6933 6936 CONECT 6933 6930 6932 CONECT 6934 6930 6935 CONECT 6935 6934 6936 6939 CONECT 6936 6932 6935 6937 CONECT 6937 6936 6938 CONECT 6938 6937 6939 CONECT 6939 6935 6938 6940 CONECT 6940 6939 6941 6974 CONECT 6941 6940 6942 6943 CONECT 6942 6941 CONECT 6943 6941 6944 6957 CONECT 6944 6943 6945 6974 CONECT 6945 6944 6946 CONECT 6946 6945 6947 CONECT 6947 6946 6948 6949 6973 CONECT 6948 6947 CONECT 6949 6947 6950 CONECT 6950 6949 6951 6961 CONECT 6951 6950 6952 6953 CONECT 6952 6951 CONECT 6953 6951 6954 6960 CONECT 6954 6953 6955 CONECT 6955 6954 6956 CONECT 6956 6955 6957 6958 6959 CONECT 6957 6943 6956 CONECT 6958 6956 CONECT 6959 6956 CONECT 6960 6953 6961 CONECT 6961 6950 6960 6962 CONECT 6962 6961 6963 6965 CONECT 6963 6962 6964 CONECT 6964 6963 6966 CONECT 6965 6962 6966 6971 CONECT 6966 6964 6965 6967 CONECT 6967 6966 6968 6972 CONECT 6968 6967 6969 CONECT 6969 6968 6970 6971 CONECT 6970 6969 CONECT 6971 6965 6969 CONECT 6972 6967 CONECT 6973 6947 CONECT 6974 6940 6944 CONECT 6975 194 621 1178 CONECT 6976 6977 6978 CONECT 6977 6976 CONECT 6978 6976 6979 CONECT 6979 6978 CONECT 6980 6983 6984 CONECT 6981 6982 CONECT 6982 6981 6983 6986 CONECT 6983 6980 6982 CONECT 6984 6980 6985 CONECT 6985 6984 6986 6989 CONECT 6986 6982 6985 6987 CONECT 6987 6986 6988 CONECT 6988 6987 6989 CONECT 6989 6985 6988 6990 CONECT 6990 6989 6991 7024 CONECT 6991 6990 6992 6993 CONECT 6992 6991 CONECT 6993 6991 6994 7007 CONECT 6994 6993 6995 7024 CONECT 6995 6994 6996 CONECT 6996 6995 6997 CONECT 6997 6996 6998 6999 7023 CONECT 6998 6997 CONECT 6999 6997 7000 CONECT 7000 6999 7001 7011 CONECT 7001 7000 7002 7003 CONECT 7002 7001 CONECT 7003 7001 7004 7010 CONECT 7004 7003 7005 CONECT 7005 7004 7006 CONECT 7006 7005 7007 7008 7009 CONECT 7007 6993 7006 CONECT 7008 7006 CONECT 7009 7006 CONECT 7010 7003 7011 CONECT 7011 7000 7010 7012 CONECT 7012 7011 7013 7015 CONECT 7013 7012 7014 CONECT 7014 7013 7016 CONECT 7015 7012 7016 7021 CONECT 7016 7014 7015 7017 CONECT 7017 7016 7018 7022 CONECT 7018 7017 7019 CONECT 7019 7018 7020 7021 CONECT 7020 7019 CONECT 7021 7015 7019 CONECT 7022 7017 CONECT 7023 6997 CONECT 7024 6990 6994 CONECT 7025 2931 3477 CONECT 7026 7029 7030 CONECT 7027 7028 CONECT 7028 7027 7029 7032 CONECT 7029 7026 7028 CONECT 7030 7026 7031 CONECT 7031 7030 7032 7035 CONECT 7032 7028 7031 7033 CONECT 7033 7032 7034 CONECT 7034 7033 7035 CONECT 7035 7031 7034 7036 CONECT 7036 7035 7037 7070 CONECT 7037 7036 7038 7039 CONECT 7038 7037 CONECT 7039 7037 7040 7053 CONECT 7040 7039 7041 7070 CONECT 7041 7040 7042 CONECT 7042 7041 7043 CONECT 7043 7042 7044 7045 7069 CONECT 7044 7043 CONECT 7045 7043 7046 CONECT 7046 7045 7047 7057 CONECT 7047 7046 7048 7049 CONECT 7048 7047 CONECT 7049 7047 7050 7056 CONECT 7050 7049 7051 CONECT 7051 7050 7052 CONECT 7052 7051 7053 7054 7055 CONECT 7053 7039 7052 CONECT 7054 7052 CONECT 7055 7052 CONECT 7056 7049 7057 CONECT 7057 7046 7056 7058 CONECT 7058 7057 7059 7061 CONECT 7059 7058 7060 CONECT 7060 7059 7062 CONECT 7061 7058 7062 7067 CONECT 7062 7060 7061 7063 CONECT 7063 7062 7064 7068 CONECT 7064 7063 7065 CONECT 7065 7064 7066 7067 CONECT 7066 7065 CONECT 7067 7061 7065 CONECT 7068 7063 CONECT 7069 7043 CONECT 7070 7036 7040 CONECT 7071 4829 5234 5235 5784 MASTER 385 0 7 48 33 0 0 6 7145 3 151 78 END