data_9UHQ # _entry.id 9UHQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.415 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9UHQ pdb_00009uhq 10.2210/pdb9uhq/pdb WWPDB D_1300058512 ? ? EMDB EMD-64172 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-07-22 ? 2 'EM metadata' 1 0 2026-07-22 ? 3 'Half map' 1 0 2026-07-22 1 4 'Half map' 1 0 2026-07-22 2 5 Image 1 0 2026-07-22 ? 6 'Primary map' 1 0 2026-07-22 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9UHQ _pdbx_database_status.recvd_initial_deposition_date 2025-04-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Local refinement of JN.1 spike in complex with antibody BA5-39' _pdbx_database_related.db_id EMD-64172 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email yuecan@ibp.ac.cn _pdbx_contact_author.name_first Can _pdbx_contact_author.name_last Yue _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0009-0005-1086-2290 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yue, C.' 1 ? 'Mao, X.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Local refinement of JN.1 spike in complex with antibody BA5-39' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yue, C.' 1 ? primary 'Mao, X.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 22478.412 1 ? ? 'Receptor-binding domain (RBD)' ? 2 polymer man BA5-39-L 11844.070 1 ? ? ? ? 3 polymer man BA5-39-H 12673.193 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;VTNLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIA PGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRSFRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPL QSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; ;VTNLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIA PGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRSFRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPL QSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKS ; A ? 2 'polypeptide(L)' no no ;DIQMTQSPSSLSAFVGDRVTITCQASQDINNFLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQP EDIATYYCHQYDNLPRTFGQGTKVEIK ; ;DIQMTQSPSSLSAFVGDRVTITCQASQDINNFLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQP EDIATYYCHQYDNLPRTFGQGTKVEIK ; B ? 3 'polypeptide(L)' no no ;EVQLVESGGGLIQPGGSLRVSCAASGLTVSRNYMSWVRQAPGKGLEWVSLIYPGGSSYYADSVKGRFTVSRDNSKNTLFL QMNSLTAEDTAVYYCARDIVGGRAGMDVWGQGTTVIVSS ; ;EVQLVESGGGLIQPGGSLRVSCAASGLTVSRNYMSWVRQAPGKGLEWVSLIYPGGSSYYADSVKGRFTVSRDNSKNTLFL QMNSLTAEDTAVYYCARDIVGGRAGMDVWGQGTTVIVSS ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 THR n 1 3 ASN n 1 4 LEU n 1 5 CYS n 1 6 PRO n 1 7 PHE n 1 8 HIS n 1 9 GLU n 1 10 VAL n 1 11 PHE n 1 12 ASN n 1 13 ALA n 1 14 THR n 1 15 ARG n 1 16 PHE n 1 17 ALA n 1 18 SER n 1 19 VAL n 1 20 TYR n 1 21 ALA n 1 22 TRP n 1 23 ASN n 1 24 ARG n 1 25 THR n 1 26 ARG n 1 27 ILE n 1 28 SER n 1 29 ASN n 1 30 CYS n 1 31 VAL n 1 32 ALA n 1 33 ASP n 1 34 TYR n 1 35 SER n 1 36 VAL n 1 37 LEU n 1 38 TYR n 1 39 ASN n 1 40 PHE n 1 41 ALA n 1 42 PRO n 1 43 PHE n 1 44 PHE n 1 45 ALA n 1 46 PHE n 1 47 LYS n 1 48 CYS n 1 49 TYR n 1 50 GLY n 1 51 VAL n 1 52 SER n 1 53 PRO n 1 54 THR n 1 55 LYS n 1 56 LEU n 1 57 ASN n 1 58 ASP n 1 59 LEU n 1 60 CYS n 1 61 PHE n 1 62 THR n 1 63 ASN n 1 64 VAL n 1 65 TYR n 1 66 ALA n 1 67 ASP n 1 68 SER n 1 69 PHE n 1 70 VAL n 1 71 ILE n 1 72 LYS n 1 73 GLY n 1 74 ASN n 1 75 GLU n 1 76 VAL n 1 77 SER n 1 78 GLN n 1 79 ILE n 1 80 ALA n 1 81 PRO n 1 82 GLY n 1 83 GLN n 1 84 THR n 1 85 GLY n 1 86 ASN n 1 87 ILE n 1 88 ALA n 1 89 ASP n 1 90 TYR n 1 91 ASN n 1 92 TYR n 1 93 LYS n 1 94 LEU n 1 95 PRO n 1 96 ASP n 1 97 ASP n 1 98 PHE n 1 99 THR n 1 100 GLY n 1 101 CYS n 1 102 VAL n 1 103 ILE n 1 104 ALA n 1 105 TRP n 1 106 ASN n 1 107 SER n 1 108 ASN n 1 109 LYS n 1 110 LEU n 1 111 ASP n 1 112 SER n 1 113 LYS n 1 114 HIS n 1 115 SER n 1 116 GLY n 1 117 ASN n 1 118 TYR n 1 119 ASP n 1 120 TYR n 1 121 TRP n 1 122 TYR n 1 123 ARG n 1 124 SER n 1 125 PHE n 1 126 ARG n 1 127 LYS n 1 128 SER n 1 129 LYS n 1 130 LEU n 1 131 LYS n 1 132 PRO n 1 133 PHE n 1 134 GLU n 1 135 ARG n 1 136 ASP n 1 137 ILE n 1 138 SER n 1 139 THR n 1 140 GLU n 1 141 ILE n 1 142 TYR n 1 143 GLN n 1 144 ALA n 1 145 GLY n 1 146 ASN n 1 147 LYS n 1 148 PRO n 1 149 CYS n 1 150 LYS n 1 151 GLY n 1 152 LYS n 1 153 GLY n 1 154 PRO n 1 155 ASN n 1 156 CYS n 1 157 TYR n 1 158 PHE n 1 159 PRO n 1 160 LEU n 1 161 GLN n 1 162 SER n 1 163 TYR n 1 164 GLY n 1 165 PHE n 1 166 ARG n 1 167 PRO n 1 168 THR n 1 169 TYR n 1 170 GLY n 1 171 VAL n 1 172 GLY n 1 173 HIS n 1 174 GLN n 1 175 PRO n 1 176 TYR n 1 177 ARG n 1 178 VAL n 1 179 VAL n 1 180 VAL n 1 181 LEU n 1 182 SER n 1 183 PHE n 1 184 GLU n 1 185 LEU n 1 186 LEU n 1 187 HIS n 1 188 ALA n 1 189 PRO n 1 190 ALA n 1 191 THR n 1 192 VAL n 1 193 CYS n 1 194 GLY n 1 195 PRO n 1 196 LYS n 1 197 LYS n 1 198 SER n 2 1 ASP n 2 2 ILE n 2 3 GLN n 2 4 MET n 2 5 THR n 2 6 GLN n 2 7 SER n 2 8 PRO n 2 9 SER n 2 10 SER n 2 11 LEU n 2 12 SER n 2 13 ALA n 2 14 PHE n 2 15 VAL n 2 16 GLY n 2 17 ASP n 2 18 ARG n 2 19 VAL n 2 20 THR n 2 21 ILE n 2 22 THR n 2 23 CYS n 2 24 GLN n 2 25 ALA n 2 26 SER n 2 27 GLN n 2 28 ASP n 2 29 ILE n 2 30 ASN n 2 31 ASN n 2 32 PHE n 2 33 LEU n 2 34 ASN n 2 35 TRP n 2 36 TYR n 2 37 GLN n 2 38 GLN n 2 39 LYS n 2 40 PRO n 2 41 GLY n 2 42 LYS n 2 43 ALA n 2 44 PRO n 2 45 LYS n 2 46 LEU n 2 47 LEU n 2 48 ILE n 2 49 TYR n 2 50 ASP n 2 51 ALA n 2 52 SER n 2 53 ASN n 2 54 LEU n 2 55 GLU n 2 56 THR n 2 57 GLY n 2 58 VAL n 2 59 PRO n 2 60 SER n 2 61 ARG n 2 62 PHE n 2 63 SER n 2 64 GLY n 2 65 SER n 2 66 GLY n 2 67 SER n 2 68 GLY n 2 69 THR n 2 70 ASP n 2 71 PHE n 2 72 THR n 2 73 PHE n 2 74 THR n 2 75 ILE n 2 76 SER n 2 77 SER n 2 78 LEU n 2 79 GLN n 2 80 PRO n 2 81 GLU n 2 82 ASP n 2 83 ILE n 2 84 ALA n 2 85 THR n 2 86 TYR n 2 87 TYR n 2 88 CYS n 2 89 HIS n 2 90 GLN n 2 91 TYR n 2 92 ASP n 2 93 ASN n 2 94 LEU n 2 95 PRO n 2 96 ARG n 2 97 THR n 2 98 PHE n 2 99 GLY n 2 100 GLN n 2 101 GLY n 2 102 THR n 2 103 LYS n 2 104 VAL n 2 105 GLU n 2 106 ILE n 2 107 LYS n 3 1 GLU n 3 2 VAL n 3 3 GLN n 3 4 LEU n 3 5 VAL n 3 6 GLU n 3 7 SER n 3 8 GLY n 3 9 GLY n 3 10 GLY n 3 11 LEU n 3 12 ILE n 3 13 GLN n 3 14 PRO n 3 15 GLY n 3 16 GLY n 3 17 SER n 3 18 LEU n 3 19 ARG n 3 20 VAL n 3 21 SER n 3 22 CYS n 3 23 ALA n 3 24 ALA n 3 25 SER n 3 26 GLY n 3 27 LEU n 3 28 THR n 3 29 VAL n 3 30 SER n 3 31 ARG n 3 32 ASN n 3 33 TYR n 3 34 MET n 3 35 SER n 3 36 TRP n 3 37 VAL n 3 38 ARG n 3 39 GLN n 3 40 ALA n 3 41 PRO n 3 42 GLY n 3 43 LYS n 3 44 GLY n 3 45 LEU n 3 46 GLU n 3 47 TRP n 3 48 VAL n 3 49 SER n 3 50 LEU n 3 51 ILE n 3 52 TYR n 3 53 PRO n 3 54 GLY n 3 55 GLY n 3 56 SER n 3 57 SER n 3 58 TYR n 3 59 TYR n 3 60 ALA n 3 61 ASP n 3 62 SER n 3 63 VAL n 3 64 LYS n 3 65 GLY n 3 66 ARG n 3 67 PHE n 3 68 THR n 3 69 VAL n 3 70 SER n 3 71 ARG n 3 72 ASP n 3 73 ASN n 3 74 SER n 3 75 LYS n 3 76 ASN n 3 77 THR n 3 78 LEU n 3 79 PHE n 3 80 LEU n 3 81 GLN n 3 82 MET n 3 83 ASN n 3 84 SER n 3 85 LEU n 3 86 THR n 3 87 ALA n 3 88 GLU n 3 89 ASP n 3 90 THR n 3 91 ALA n 3 92 VAL n 3 93 TYR n 3 94 TYR n 3 95 CYS n 3 96 ALA n 3 97 ARG n 3 98 ASP n 3 99 ILE n 3 100 VAL n 3 101 GLY n 3 102 GLY n 3 103 ARG n 3 104 ALA n 3 105 GLY n 3 106 MET n 3 107 ASP n 3 108 VAL n 3 109 TRP n 3 110 GLY n 3 111 GLN n 3 112 GLY n 3 113 THR n 3 114 THR n 3 115 VAL n 3 116 ILE n 3 117 VAL n 3 118 SER n 3 119 SER n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 198 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? Omicron/JN.1 ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 107 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 119 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 1 VAL VAL A . n A 1 2 THR 2 2 2 THR THR A . n A 1 3 ASN 3 3 3 ASN ASN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 THR 14 14 14 THR THR A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 PHE 16 16 16 PHE PHE A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 TRP 22 22 22 TRP TRP A . n A 1 23 ASN 23 23 23 ASN ASN A . n A 1 24 ARG 24 24 24 ARG ARG A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 TYR 38 38 38 TYR TYR A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 PHE 43 43 43 PHE PHE A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 PHE 46 46 46 PHE PHE A . n A 1 47 LYS 47 47 47 LYS LYS A . n A 1 48 CYS 48 48 48 CYS CYS A . n A 1 49 TYR 49 49 49 TYR TYR A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 CYS 60 60 60 CYS CYS A . n A 1 61 PHE 61 61 61 PHE PHE A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ASP 67 67 67 ASP ASP A . n A 1 68 SER 68 68 68 SER SER A . n A 1 69 PHE 69 69 69 PHE PHE A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 LYS 72 72 72 LYS LYS A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 ILE 79 79 79 ILE ILE A . n A 1 80 ALA 80 80 80 ALA ALA A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 GLN 83 83 83 GLN GLN A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 ILE 87 87 87 ILE ILE A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 TYR 92 92 92 TYR TYR A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 ASP 96 96 96 ASP ASP A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 CYS 101 101 101 CYS CYS A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 TRP 105 105 105 TRP TRP A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 LYS 109 109 109 LYS LYS A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 ASP 111 111 111 ASP ASP A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 HIS 114 114 114 HIS HIS A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 ASN 117 117 117 ASN ASN A . n A 1 118 TYR 118 118 118 TYR TYR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 TRP 121 121 121 TRP TRP A . n A 1 122 TYR 122 122 122 TYR TYR A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 SER 124 124 124 SER SER A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 ARG 126 126 126 ARG ARG A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 SER 128 128 128 SER SER A . n A 1 129 LYS 129 129 129 LYS LYS A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 PHE 133 133 133 PHE PHE A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 ARG 135 135 135 ARG ARG A . n A 1 136 ASP 136 136 136 ASP ASP A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 ILE 141 141 141 ILE ILE A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 GLN 143 143 143 GLN GLN A . n A 1 144 ALA 144 144 144 ALA ALA A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 ASN 146 146 146 ASN ASN A . n A 1 147 LYS 147 147 147 LYS LYS A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 CYS 149 149 149 CYS CYS A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 LYS 152 152 152 LYS LYS A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 ASN 155 155 155 ASN ASN A . n A 1 156 CYS 156 156 156 CYS CYS A . n A 1 157 TYR 157 157 157 TYR TYR A . n A 1 158 PHE 158 158 158 PHE PHE A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 GLN 161 161 161 GLN GLN A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 GLY 164 164 164 GLY GLY A . n A 1 165 PHE 165 165 165 PHE PHE A . n A 1 166 ARG 166 166 166 ARG ARG A . n A 1 167 PRO 167 167 167 PRO PRO A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 VAL 171 171 171 VAL VAL A . n A 1 172 GLY 172 172 172 GLY GLY A . n A 1 173 HIS 173 173 173 HIS HIS A . n A 1 174 GLN 174 174 174 GLN GLN A . n A 1 175 PRO 175 175 175 PRO PRO A . n A 1 176 TYR 176 176 176 TYR TYR A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 LEU 181 181 181 LEU LEU A . n A 1 182 SER 182 182 182 SER SER A . n A 1 183 PHE 183 183 183 PHE PHE A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 HIS 187 187 187 HIS HIS A . n A 1 188 ALA 188 188 188 ALA ALA A . n A 1 189 PRO 189 189 189 PRO PRO A . n A 1 190 ALA 190 190 190 ALA ALA A . n A 1 191 THR 191 191 191 THR THR A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 CYS 193 193 193 CYS CYS A . n A 1 194 GLY 194 194 194 GLY GLY A . n A 1 195 PRO 195 195 195 PRO PRO A . n A 1 196 LYS 196 196 196 LYS LYS A . n A 1 197 LYS 197 197 197 LYS LYS A . n A 1 198 SER 198 198 198 SER SER A . n B 2 1 ASP 1 1 1 ASP ASP B . n B 2 2 ILE 2 2 2 ILE ILE B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 MET 4 4 4 MET MET B . n B 2 5 THR 5 5 5 THR THR B . n B 2 6 GLN 6 6 6 GLN GLN B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 PRO 8 8 8 PRO PRO B . n B 2 9 SER 9 9 9 SER SER B . n B 2 10 SER 10 10 10 SER SER B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 ALA 13 13 13 ALA ALA B . n B 2 14 PHE 14 14 14 PHE PHE B . n B 2 15 VAL 15 15 15 VAL VAL B . n B 2 16 GLY 16 16 16 GLY GLY B . n B 2 17 ASP 17 17 17 ASP ASP B . n B 2 18 ARG 18 18 18 ARG ARG B . n B 2 19 VAL 19 19 19 VAL VAL B . n B 2 20 THR 20 20 20 THR THR B . n B 2 21 ILE 21 21 21 ILE ILE B . n B 2 22 THR 22 22 22 THR THR B . n B 2 23 CYS 23 23 23 CYS CYS B . n B 2 24 GLN 24 24 24 GLN GLN B . n B 2 25 ALA 25 25 25 ALA ALA B . n B 2 26 SER 26 26 26 SER SER B . n B 2 27 GLN 27 27 27 GLN GLN B . n B 2 28 ASP 28 28 28 ASP ASP B . n B 2 29 ILE 29 29 29 ILE ILE B . n B 2 30 ASN 30 30 30 ASN ASN B . n B 2 31 ASN 31 31 31 ASN ASN B . n B 2 32 PHE 32 32 32 PHE PHE B . n B 2 33 LEU 33 33 33 LEU LEU B . n B 2 34 ASN 34 34 34 ASN ASN B . n B 2 35 TRP 35 35 35 TRP TRP B . n B 2 36 TYR 36 36 36 TYR TYR B . n B 2 37 GLN 37 37 37 GLN GLN B . n B 2 38 GLN 38 38 38 GLN GLN B . n B 2 39 LYS 39 39 39 LYS LYS B . n B 2 40 PRO 40 40 40 PRO PRO B . n B 2 41 GLY 41 41 41 GLY GLY B . n B 2 42 LYS 42 42 42 LYS LYS B . n B 2 43 ALA 43 43 43 ALA ALA B . n B 2 44 PRO 44 44 44 PRO PRO B . n B 2 45 LYS 45 45 45 LYS LYS B . n B 2 46 LEU 46 46 46 LEU LEU B . n B 2 47 LEU 47 47 47 LEU LEU B . n B 2 48 ILE 48 48 48 ILE ILE B . n B 2 49 TYR 49 49 49 TYR TYR B . n B 2 50 ASP 50 50 50 ASP ASP B . n B 2 51 ALA 51 51 51 ALA ALA B . n B 2 52 SER 52 52 52 SER SER B . n B 2 53 ASN 53 53 53 ASN ASN B . n B 2 54 LEU 54 54 54 LEU LEU B . n B 2 55 GLU 55 55 55 GLU GLU B . n B 2 56 THR 56 56 56 THR THR B . n B 2 57 GLY 57 57 57 GLY GLY B . n B 2 58 VAL 58 58 58 VAL VAL B . n B 2 59 PRO 59 59 59 PRO PRO B . n B 2 60 SER 60 60 60 SER SER B . n B 2 61 ARG 61 61 61 ARG ARG B . n B 2 62 PHE 62 62 62 PHE PHE B . n B 2 63 SER 63 63 63 SER SER B . n B 2 64 GLY 64 64 64 GLY GLY B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 GLY 66 66 66 GLY GLY B . n B 2 67 SER 67 67 67 SER SER B . n B 2 68 GLY 68 68 68 GLY GLY B . n B 2 69 THR 69 69 69 THR THR B . n B 2 70 ASP 70 70 70 ASP ASP B . n B 2 71 PHE 71 71 71 PHE PHE B . n B 2 72 THR 72 72 72 THR THR B . n B 2 73 PHE 73 73 73 PHE PHE B . n B 2 74 THR 74 74 74 THR THR B . n B 2 75 ILE 75 75 75 ILE ILE B . n B 2 76 SER 76 76 76 SER SER B . n B 2 77 SER 77 77 77 SER SER B . n B 2 78 LEU 78 78 78 LEU LEU B . n B 2 79 GLN 79 79 79 GLN GLN B . n B 2 80 PRO 80 80 80 PRO PRO B . n B 2 81 GLU 81 81 81 GLU GLU B . n B 2 82 ASP 82 82 82 ASP ASP B . n B 2 83 ILE 83 83 83 ILE ILE B . n B 2 84 ALA 84 84 84 ALA ALA B . n B 2 85 THR 85 85 85 THR THR B . n B 2 86 TYR 86 86 86 TYR TYR B . n B 2 87 TYR 87 87 87 TYR TYR B . n B 2 88 CYS 88 88 88 CYS CYS B . n B 2 89 HIS 89 89 89 HIS HIS B . n B 2 90 GLN 90 90 90 GLN GLN B . n B 2 91 TYR 91 91 91 TYR TYR B . n B 2 92 ASP 92 92 92 ASP ASP B . n B 2 93 ASN 93 93 93 ASN ASN B . n B 2 94 LEU 94 94 94 LEU LEU B . n B 2 95 PRO 95 95 95 PRO PRO B . n B 2 96 ARG 96 96 96 ARG ARG B . n B 2 97 THR 97 97 97 THR THR B . n B 2 98 PHE 98 98 98 PHE PHE B . n B 2 99 GLY 99 99 99 GLY GLY B . n B 2 100 GLN 100 100 100 GLN GLN B . n B 2 101 GLY 101 101 101 GLY GLY B . n B 2 102 THR 102 102 102 THR THR B . n B 2 103 LYS 103 103 103 LYS LYS B . n B 2 104 VAL 104 104 104 VAL VAL B . n B 2 105 GLU 105 105 105 GLU GLU B . n B 2 106 ILE 106 106 106 ILE ILE B . n B 2 107 LYS 107 107 107 LYS LYS B . n C 3 1 GLU 1 1 1 GLU GLU C . n C 3 2 VAL 2 2 2 VAL VAL C . n C 3 3 GLN 3 3 3 GLN GLN C . n C 3 4 LEU 4 4 4 LEU LEU C . n C 3 5 VAL 5 5 5 VAL VAL C . n C 3 6 GLU 6 6 6 GLU GLU C . n C 3 7 SER 7 7 7 SER SER C . n C 3 8 GLY 8 8 8 GLY GLY C . n C 3 9 GLY 9 9 9 GLY GLY C . n C 3 10 GLY 10 10 10 GLY GLY C . n C 3 11 LEU 11 11 11 LEU LEU C . n C 3 12 ILE 12 12 12 ILE ILE C . n C 3 13 GLN 13 13 13 GLN GLN C . n C 3 14 PRO 14 14 14 PRO PRO C . n C 3 15 GLY 15 15 15 GLY GLY C . n C 3 16 GLY 16 16 16 GLY GLY C . n C 3 17 SER 17 17 17 SER SER C . n C 3 18 LEU 18 18 18 LEU LEU C . n C 3 19 ARG 19 19 19 ARG ARG C . n C 3 20 VAL 20 20 20 VAL VAL C . n C 3 21 SER 21 21 21 SER SER C . n C 3 22 CYS 22 22 22 CYS CYS C . n C 3 23 ALA 23 23 23 ALA ALA C . n C 3 24 ALA 24 24 24 ALA ALA C . n C 3 25 SER 25 25 25 SER SER C . n C 3 26 GLY 26 26 26 GLY GLY C . n C 3 27 LEU 27 27 27 LEU LEU C . n C 3 28 THR 28 28 28 THR THR C . n C 3 29 VAL 29 29 29 VAL VAL C . n C 3 30 SER 30 30 30 SER SER C . n C 3 31 ARG 31 31 31 ARG ARG C . n C 3 32 ASN 32 32 32 ASN ASN C . n C 3 33 TYR 33 33 33 TYR TYR C . n C 3 34 MET 34 34 34 MET MET C . n C 3 35 SER 35 35 35 SER SER C . n C 3 36 TRP 36 36 36 TRP TRP C . n C 3 37 VAL 37 37 37 VAL VAL C . n C 3 38 ARG 38 38 38 ARG ARG C . n C 3 39 GLN 39 39 39 GLN GLN C . n C 3 40 ALA 40 40 40 ALA ALA C . n C 3 41 PRO 41 41 41 PRO PRO C . n C 3 42 GLY 42 42 42 GLY GLY C . n C 3 43 LYS 43 43 43 LYS LYS C . n C 3 44 GLY 44 44 44 GLY GLY C . n C 3 45 LEU 45 45 45 LEU LEU C . n C 3 46 GLU 46 46 46 GLU GLU C . n C 3 47 TRP 47 47 47 TRP TRP C . n C 3 48 VAL 48 48 48 VAL VAL C . n C 3 49 SER 49 49 49 SER SER C . n C 3 50 LEU 50 50 50 LEU LEU C . n C 3 51 ILE 51 51 51 ILE ILE C . n C 3 52 TYR 52 52 52 TYR TYR C . n C 3 53 PRO 53 53 53 PRO PRO C . n C 3 54 GLY 54 54 54 GLY GLY C . n C 3 55 GLY 55 55 55 GLY GLY C . n C 3 56 SER 56 56 56 SER SER C . n C 3 57 SER 57 57 57 SER SER C . n C 3 58 TYR 58 58 58 TYR TYR C . n C 3 59 TYR 59 59 59 TYR TYR C . n C 3 60 ALA 60 60 60 ALA ALA C . n C 3 61 ASP 61 61 61 ASP ASP C . n C 3 62 SER 62 62 62 SER SER C . n C 3 63 VAL 63 63 63 VAL VAL C . n C 3 64 LYS 64 64 64 LYS LYS C . n C 3 65 GLY 65 65 65 GLY GLY C . n C 3 66 ARG 66 66 66 ARG ARG C . n C 3 67 PHE 67 67 67 PHE PHE C . n C 3 68 THR 68 68 68 THR THR C . n C 3 69 VAL 69 69 69 VAL VAL C . n C 3 70 SER 70 70 70 SER SER C . n C 3 71 ARG 71 71 71 ARG ARG C . n C 3 72 ASP 72 72 72 ASP ASP C . n C 3 73 ASN 73 73 73 ASN ASN C . n C 3 74 SER 74 74 74 SER SER C . n C 3 75 LYS 75 75 75 LYS LYS C . n C 3 76 ASN 76 76 76 ASN ASN C . n C 3 77 THR 77 77 77 THR THR C . n C 3 78 LEU 78 78 78 LEU LEU C . n C 3 79 PHE 79 79 79 PHE PHE C . n C 3 80 LEU 80 80 80 LEU LEU C . n C 3 81 GLN 81 81 81 GLN GLN C . n C 3 82 MET 82 82 82 MET MET C . n C 3 83 ASN 83 83 83 ASN ASN C . n C 3 84 SER 84 84 84 SER SER C . n C 3 85 LEU 85 85 85 LEU LEU C . n C 3 86 THR 86 86 86 THR THR C . n C 3 87 ALA 87 87 87 ALA ALA C . n C 3 88 GLU 88 88 88 GLU GLU C . n C 3 89 ASP 89 89 89 ASP ASP C . n C 3 90 THR 90 90 90 THR THR C . n C 3 91 ALA 91 91 91 ALA ALA C . n C 3 92 VAL 92 92 92 VAL VAL C . n C 3 93 TYR 93 93 93 TYR TYR C . n C 3 94 TYR 94 94 94 TYR TYR C . n C 3 95 CYS 95 95 95 CYS CYS C . n C 3 96 ALA 96 96 96 ALA ALA C . n C 3 97 ARG 97 97 97 ARG ARG C . n C 3 98 ASP 98 98 98 ASP ASP C . n C 3 99 ILE 99 99 99 ILE ILE C . n C 3 100 VAL 100 100 100 VAL VAL C . n C 3 101 GLY 101 101 101 GLY GLY C . n C 3 102 GLY 102 102 102 GLY GLY C . n C 3 103 ARG 103 103 103 ARG ARG C . n C 3 104 ALA 104 104 104 ALA ALA C . n C 3 105 GLY 105 105 105 GLY GLY C . n C 3 106 MET 106 106 106 MET MET C . n C 3 107 ASP 107 107 107 ASP ASP C . n C 3 108 VAL 108 108 108 VAL VAL C . n C 3 109 TRP 109 109 109 TRP TRP C . n C 3 110 GLY 110 110 110 GLY GLY C . n C 3 111 GLN 111 111 111 GLN GLN C . n C 3 112 GLY 112 112 112 GLY GLY C . n C 3 113 THR 113 113 113 THR THR C . n C 3 114 THR 114 114 114 THR THR C . n C 3 115 VAL 115 115 115 VAL VAL C . n C 3 116 ILE 116 116 116 ILE ILE C . n C 3 117 VAL 117 117 117 VAL VAL C . n C 3 118 SER 118 118 118 SER SER C . n C 3 119 SER 119 119 119 SER SER C . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9UHQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9UHQ _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 4.62 _refine.ls_d_res_low ? _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work ? _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'REAL-SPACE (WEIGHTED MAP SUM AT ATOM CENTERS)' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3399 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.744 ? 4618 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 6.130 ? 468 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.048 ? 491 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.005 ? 601 ? f_plane_restr ? ? ? # _struct.entry_id 9UHQ _struct.title 'Local refinement of JN.1 spike in complex with antibody BA5-39' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9UHQ _struct_keywords.text 'SARS-CoV-2, complex, viral protein, antibody, PROTEIN BINDING/IMMUNE SYSTEM, PROTEIN BINDING-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'PROTEIN BINDING/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;ITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIA PGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFP LQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKS ; 332 2 PDB 9UHQ 9UHQ ? 2 ? 1 3 PDB 9UHQ 9UHQ ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9UHQ A 1 ? 198 ? P0DTC2 332 ? 530 ? 1 198 2 2 9UHQ B 1 ? 107 ? 9UHQ 1 ? 107 ? 1 107 3 3 9UHQ C 1 ? 119 ? 9UHQ 1 ? 119 ? 1 119 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9UHQ VAL A 1 ? UNP P0DTC2 ILE 332 conflict 1 1 1 9UHQ HIS A 8 ? UNP P0DTC2 GLY 339 variant 8 2 1 9UHQ THR A 25 ? UNP P0DTC2 LYS 356 conflict 25 3 1 9UHQ PHE A 40 ? UNP P0DTC2 SER 371 variant 40 4 1 9UHQ PRO A 42 ? UNP P0DTC2 SER 373 variant 42 5 1 9UHQ PHE A 44 ? UNP P0DTC2 SER 375 variant 44 6 1 9UHQ ALA A 45 ? UNP P0DTC2 THR 376 variant 45 7 1 9UHQ LYS A 72 ? UNP P0DTC2 ARG 403 conflict 72 8 1 9UHQ ASN A 74 ? UNP P0DTC2 ASP 405 variant 74 9 1 9UHQ SER A 77 ? UNP P0DTC2 ARG 408 variant 77 10 1 9UHQ ASN A 86 ? UNP P0DTC2 LYS 417 variant 86 11 1 9UHQ LYS A 109 ? UNP P0DTC2 ASN 440 variant 109 12 1 9UHQ HIS A 114 ? UNP P0DTC2 VAL 445 conflict 114 13 1 9UHQ SER A 115 ? UNP P0DTC2 GLY 446 variant 115 14 1 9UHQ ASP A 119 ? UNP P0DTC2 ASN 450 conflict 119 15 1 9UHQ TRP A 121 ? UNP P0DTC2 LEU 452 conflict 121 16 1 9UHQ SER A 124 ? UNP P0DTC2 LEU 455 conflict 124 17 1 9UHQ LYS A 129 ? UNP P0DTC2 ASN 460 variant 129 18 1 9UHQ ASN A 146 ? UNP P0DTC2 SER 477 variant 146 19 1 9UHQ LYS A 147 ? UNP P0DTC2 THR 478 variant 147 20 1 9UHQ LYS A 150 ? UNP P0DTC2 ASN 481 conflict 150 21 1 9UHQ ? A ? ? UNP P0DTC2 VAL 483 deletion ? 22 1 9UHQ LYS A 152 ? UNP P0DTC2 GLU 484 variant 152 23 1 9UHQ PRO A 154 ? UNP P0DTC2 PHE 486 variant 154 24 1 9UHQ ARG A 166 ? UNP P0DTC2 GLN 498 variant 166 25 1 9UHQ TYR A 169 ? UNP P0DTC2 ASN 501 variant 169 26 1 9UHQ HIS A 173 ? UNP P0DTC2 TYR 505 variant 173 27 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 6 ? VAL A 10 ? PRO A 6 VAL A 10 5 ? 5 HELX_P HELX_P2 AA2 SER A 18 ? TRP A 22 ? SER A 18 TRP A 22 5 ? 5 HELX_P HELX_P3 AA3 ASP A 33 ? PHE A 40 ? ASP A 33 PHE A 40 5 ? 8 HELX_P HELX_P4 AA4 SER A 52 ? ASP A 58 ? SER A 52 ASP A 58 5 ? 7 HELX_P HELX_P5 AA5 GLY A 73 ? ILE A 79 ? GLY A 73 ILE A 79 5 ? 7 HELX_P HELX_P6 AA6 GLY A 85 ? ASN A 91 ? GLY A 85 ASN A 91 1 ? 7 HELX_P HELX_P7 AA7 SER A 107 ? SER A 112 ? SER A 107 SER A 112 1 ? 6 HELX_P HELX_P8 AA8 GLY A 170 ? GLN A 174 ? GLY A 170 GLN A 174 5 ? 5 HELX_P HELX_P9 AA9 PRO A 195 ? SER A 198 ? PRO A 195 SER A 198 5 ? 4 HELX_P HELX_P10 AB1 GLN B 79 ? ILE B 83 ? GLN B 79 ILE B 83 5 ? 5 HELX_P HELX_P11 AB2 THR C 28 ? ASN C 32 ? THR C 28 ASN C 32 5 ? 5 HELX_P HELX_P12 AB3 THR C 86 ? THR C 90 ? THR C 86 THR C 90 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 30 SG ? ? A CYS 5 A CYS 30 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf2 disulf ? ? A CYS 48 SG ? ? ? 1_555 A CYS 101 SG ? ? A CYS 48 A CYS 101 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? A CYS 60 SG ? ? ? 1_555 A CYS 193 SG ? ? A CYS 60 A CYS 193 1_555 ? ? ? ? ? ? ? 2.035 ? ? disulf4 disulf ? ? A CYS 149 SG ? ? ? 1_555 A CYS 156 SG ? ? A CYS 149 A CYS 156 1_555 ? ? ? ? ? ? ? 2.036 ? ? disulf5 disulf ? ? B CYS 23 SG ? ? ? 1_555 B CYS 88 SG ? ? B CYS 23 B CYS 88 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf6 disulf ? ? C CYS 22 SG ? ? ? 1_555 C CYS 95 SG ? ? C CYS 22 C CYS 95 1_555 ? ? ? ? ? ? ? 2.041 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 5 ? CYS A 30 ? CYS A 5 ? 1_555 CYS A 30 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 48 ? CYS A 101 ? CYS A 48 ? 1_555 CYS A 101 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS A 60 ? CYS A 193 ? CYS A 60 ? 1_555 CYS A 193 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS A 149 ? CYS A 156 ? CYS A 149 ? 1_555 CYS A 156 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS B 23 ? CYS B 88 ? CYS B 23 ? 1_555 CYS B 88 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS C 22 ? CYS C 95 ? CYS C 22 ? 1_555 CYS C 95 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 7 B . ? SER 7 B PRO 8 B ? PRO 8 B 1 -5.26 2 LEU 94 B . ? LEU 94 B PRO 95 B ? PRO 95 B 1 -6.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 2 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 4 ? AA6 ? 6 ? AA7 ? 4 ? AA8 ? 4 ? AA9 ? 6 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA6 4 5 ? anti-parallel AA6 5 6 ? anti-parallel AA7 1 2 ? parallel AA7 2 3 ? anti-parallel AA7 3 4 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA9 1 2 ? parallel AA9 2 3 ? anti-parallel AA9 3 4 ? anti-parallel AA9 4 5 ? anti-parallel AA9 5 6 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ASN A 23 ? ILE A 27 ? ASN A 23 ILE A 27 AA1 2 ASN A 63 ? ILE A 71 ? ASN A 63 ILE A 71 AA1 3 TYR A 176 ? GLU A 184 ? TYR A 176 GLU A 184 AA1 4 GLY A 100 ? ASN A 106 ? GLY A 100 ASN A 106 AA1 5 PHE A 44 ? TYR A 49 ? PHE A 44 TYR A 49 AA2 1 CYS A 60 ? PHE A 61 ? CYS A 60 PHE A 61 AA2 2 VAL A 192 ? CYS A 193 ? VAL A 192 CYS A 193 AA3 1 TRP A 121 ? ARG A 123 ? TRP A 121 ARG A 123 AA3 2 LEU A 160 ? SER A 162 ? LEU A 160 SER A 162 AA4 1 TYR A 142 ? GLN A 143 ? TYR A 142 GLN A 143 AA4 2 CYS A 156 ? TYR A 157 ? CYS A 156 TYR A 157 AA5 1 MET B 4 ? SER B 7 ? MET B 4 SER B 7 AA5 2 VAL B 19 ? ALA B 25 ? VAL B 19 ALA B 25 AA5 3 ASP B 70 ? ILE B 75 ? ASP B 70 ILE B 75 AA5 4 PHE B 62 ? SER B 67 ? PHE B 62 SER B 67 AA6 1 SER B 10 ? ALA B 13 ? SER B 10 ALA B 13 AA6 2 THR B 102 ? ILE B 106 ? THR B 102 ILE B 106 AA6 3 THR B 85 ? GLN B 90 ? THR B 85 GLN B 90 AA6 4 LEU B 33 ? GLN B 38 ? LEU B 33 GLN B 38 AA6 5 LYS B 45 ? TYR B 49 ? LYS B 45 TYR B 49 AA6 6 ASN B 53 ? LEU B 54 ? ASN B 53 LEU B 54 AA7 1 SER B 10 ? ALA B 13 ? SER B 10 ALA B 13 AA7 2 THR B 102 ? ILE B 106 ? THR B 102 ILE B 106 AA7 3 THR B 85 ? GLN B 90 ? THR B 85 GLN B 90 AA7 4 THR B 97 ? PHE B 98 ? THR B 97 PHE B 98 AA8 1 GLN C 3 ? SER C 7 ? GLN C 3 SER C 7 AA8 2 LEU C 18 ? SER C 25 ? LEU C 18 SER C 25 AA8 3 THR C 77 ? MET C 82 ? THR C 77 MET C 82 AA8 4 PHE C 67 ? ASP C 72 ? PHE C 67 ASP C 72 AA9 1 LEU C 11 ? ILE C 12 ? LEU C 11 ILE C 12 AA9 2 THR C 113 ? VAL C 117 ? THR C 113 VAL C 117 AA9 3 ALA C 91 ? ALA C 96 ? ALA C 91 ALA C 96 AA9 4 MET C 34 ? GLN C 39 ? MET C 34 GLN C 39 AA9 5 LEU C 45 ? ILE C 51 ? LEU C 45 ILE C 51 AA9 6 SER C 57 ? TYR C 59 ? SER C 57 TYR C 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N THR A 25 ? N THR A 25 O ALA A 66 ? O ALA A 66 AA1 2 3 N PHE A 69 ? N PHE A 69 O VAL A 178 ? O VAL A 178 AA1 3 4 O VAL A 179 ? O VAL A 179 N ILE A 103 ? N ILE A 103 AA1 4 5 O GLY A 100 ? O GLY A 100 N TYR A 49 ? N TYR A 49 AA2 1 2 N PHE A 61 ? N PHE A 61 O VAL A 192 ? O VAL A 192 AA3 1 2 N TYR A 122 ? N TYR A 122 O GLN A 161 ? O GLN A 161 AA4 1 2 N TYR A 142 ? N TYR A 142 O TYR A 157 ? O TYR A 157 AA5 1 2 N SER B 7 ? N SER B 7 O THR B 22 ? O THR B 22 AA5 2 3 N CYS B 23 ? N CYS B 23 O PHE B 71 ? O PHE B 71 AA5 3 4 O THR B 74 ? O THR B 74 N SER B 63 ? N SER B 63 AA6 1 2 N LEU B 11 ? N LEU B 11 O LYS B 103 ? O LYS B 103 AA6 2 3 O THR B 102 ? O THR B 102 N TYR B 86 ? N TYR B 86 AA6 3 4 O HIS B 89 ? O HIS B 89 N ASN B 34 ? N ASN B 34 AA6 4 5 N GLN B 37 ? N GLN B 37 O LYS B 45 ? O LYS B 45 AA6 5 6 N TYR B 49 ? N TYR B 49 O ASN B 53 ? O ASN B 53 AA7 1 2 N LEU B 11 ? N LEU B 11 O LYS B 103 ? O LYS B 103 AA7 2 3 O THR B 102 ? O THR B 102 N TYR B 86 ? N TYR B 86 AA7 3 4 N GLN B 90 ? N GLN B 90 O THR B 97 ? O THR B 97 AA8 1 2 N SER C 7 ? N SER C 7 O SER C 21 ? O SER C 21 AA8 2 3 N LEU C 18 ? N LEU C 18 O MET C 82 ? O MET C 82 AA8 3 4 O THR C 77 ? O THR C 77 N ASP C 72 ? N ASP C 72 AA9 1 2 N ILE C 12 ? N ILE C 12 O ILE C 116 ? O ILE C 116 AA9 2 3 O VAL C 115 ? O VAL C 115 N ALA C 91 ? N ALA C 91 AA9 3 4 O TYR C 94 ? O TYR C 94 N VAL C 37 ? N VAL C 37 AA9 4 5 N TRP C 36 ? N TRP C 36 O SER C 49 ? O SER C 49 AA9 5 6 N LEU C 50 ? N LEU C 50 O TYR C 58 ? O TYR C 58 # _pdbx_entry_details.entry_id 9UHQ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 B _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 70 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 B _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 70 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD2 _pdbx_validate_rmsd_angle.auth_asym_id_3 B _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 70 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.74 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 5.44 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 10 ? ? -97.71 -61.87 2 1 ASN A 29 ? ? 61.78 63.61 3 1 TYR A 38 ? ? -82.82 46.80 4 1 PRO A 42 ? ? -67.89 7.83 5 1 TYR A 92 ? ? -160.93 111.66 6 1 ASP A 97 ? ? -97.09 32.85 7 1 ASN A 155 ? ? 59.00 19.10 8 1 CYS A 193 ? ? -172.31 -171.03 9 1 ASN B 30 ? ? 59.94 -115.10 10 1 PHE B 32 ? ? -100.32 72.96 11 1 VAL C 48 ? ? -109.33 -63.00 12 1 SER C 84 ? ? 61.21 69.06 13 1 ALA C 91 ? ? -171.72 -171.05 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9UHQ _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9UHQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.62 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 161866 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'JN.1 spike in complex with antibody BA5-39' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 9UHQ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'DARK FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9UHQ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9UHQ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2025-04-14 _em_admin.deposition_site PDBJ _em_admin.entry_id 9UHQ _em_admin.last_update 2026-07-22 _em_admin.map_release_date 2026-07-22 _em_admin.title 'Local refinement of JN.1 spike in complex with antibody BA5-39' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 1 2 9606 'Homo sapiens' ? ? ? ? ? ? ? 1 3 2697049 'Severe acute respiratory syndrome coronavirus 2' ? ? ? ? ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9UHQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #