HEADER LIGASE 16-APR-25 9UIW TITLE PLASMODIUM VIVAX CYTOPLASMIC PHENYLALANYL-TRNA SYNTHETASE IN COMPLEX TITLE 2 WITH PHENYLALANINE IN SPACE GROUP P21212 AT 2.60 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHENYLALANINE TRNA-SYNTHETASE ALPHA SUBUNIT,FRS,PHERS, COMPND 5 PHENYLALANYL-TRNA SYNTHETASE ALPHA SUBUNIT; COMPND 6 EC: 6.1.1.20; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PHENYLALANINE--TRNA LIGASE BETA SUBUNIT; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PHENYLALANINE TRNA-SYNTHETASE BETA SUBUNIT,FRS,PHERS, COMPND 12 PHENYLALANYL-TRNA SYNTHETASE BETA SUBUNIT; COMPND 13 EC: 6.1.1.20; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: PVX_081300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 10 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 11 ORGANISM_TAXID: 5855; SOURCE 12 GENE: PVX_090880; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOACYLATION, AMINOACYL-TRNA SYNTHETASE, TRNA-BINDING, ATP-BINDING, KEYWDS 2 AUXILIARY POCKET, HETEROTETRAMERIC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.MANICKAM,N.MALHOTRA,N.MUTHARASAPPAN,A.SHARMA REVDAT 1 04-NOV-26 9UIW 0 JRNL AUTH N.MUTHARASAPPAN,Y.MANICKAM,A.SHARMA JRNL TITL PLASMODIUM VIVAX PHENYLALANYL-TRNA SYNTHETASE IN COMPLEX JRNL TITL 2 WITH L-PHE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7300 - 6.2600 1.00 2775 145 0.1844 0.2098 REMARK 3 2 6.2600 - 4.9700 1.00 2654 139 0.2020 0.2355 REMARK 3 3 4.9700 - 4.3500 1.00 2600 137 0.1617 0.2108 REMARK 3 4 4.3500 - 3.9500 1.00 2603 137 0.1765 0.2373 REMARK 3 5 3.9500 - 3.6700 1.00 2578 136 0.2029 0.2362 REMARK 3 6 3.6700 - 3.4500 1.00 2567 135 0.2116 0.2411 REMARK 3 7 3.4500 - 3.2800 1.00 2581 136 0.2408 0.2827 REMARK 3 8 3.2800 - 3.1300 1.00 2565 135 0.2951 0.3250 REMARK 3 9 3.1300 - 3.0100 1.00 2553 134 0.2870 0.3430 REMARK 3 10 3.0100 - 2.9100 1.00 2560 135 0.2750 0.3415 REMARK 3 11 2.9100 - 2.8200 1.00 2527 133 0.2932 0.2971 REMARK 3 12 2.8200 - 2.7400 1.00 2557 133 0.3371 0.3642 REMARK 3 13 2.7400 - 2.6700 1.00 2524 131 0.4062 0.4377 REMARK 3 14 2.6700 - 2.6000 0.98 2491 130 0.4723 0.4509 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7447 REMARK 3 ANGLE : 1.016 10103 REMARK 3 CHIRALITY : 0.059 1134 REMARK 3 PLANARITY : 0.008 1303 REMARK 3 DIHEDRAL : 18.261 2684 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 3.6012 22.2796 35.4358 REMARK 3 T TENSOR REMARK 3 T11: 0.5605 T22: 0.5917 REMARK 3 T33: 0.5839 T12: -0.0582 REMARK 3 T13: -0.0717 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 1.3459 L22: 1.8704 REMARK 3 L33: 0.5676 L12: 1.4085 REMARK 3 L13: -0.6432 L23: -0.5778 REMARK 3 S TENSOR REMARK 3 S11: -0.1716 S12: 0.2015 S13: 0.3236 REMARK 3 S21: -0.2783 S22: 0.3041 S23: 0.3642 REMARK 3 S31: -0.0753 S32: -0.0718 S33: -0.1204 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-25. REMARK 100 THE DEPOSITION ID IS D_1300055666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.13100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BY6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MAGNESIUM ACETATE, 0.1 M MOPS REMARK 280 AND 12% W/V PEG 8000 (PROPLEX E8), PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.86000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.08500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.86000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.08500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 71770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -244.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 277 CG CD CE NZ REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 GLN A 285 CG CD OE1 NE2 REMARK 470 LYS A 398 CG CD CE NZ REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 LEU A 447 CG CD1 CD2 REMARK 470 LYS A 481 CE NZ REMARK 470 LYS A 487 CG CD CE NZ REMARK 470 LYS A 491 CG CD CE NZ REMARK 470 TYR A 507 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS A 508 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 509 CG CD OE1 OE2 REMARK 470 GLU A 510 CG CD OE1 OE2 REMARK 470 ASN A 511 CG OD1 ND2 REMARK 470 LYS A 512 CG CD CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 LEU A 515 CG CD1 CD2 REMARK 470 ARG A 557 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 560 CG CD NE CZ NH1 NH2 REMARK 470 SER A 567 OG REMARK 470 LEU B 11 CG CD1 CD2 REMARK 470 ILE B 12 CG1 CG2 CD1 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 GLU B 22 CG CD OE1 OE2 REMARK 470 LEU B 24 CG CD1 CD2 REMARK 470 ILE B 27 CG1 CG2 CD1 REMARK 470 LYS B 41 CG CD CE NZ REMARK 470 ILE B 46 CG1 CG2 CD1 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ASN B 85 CG OD1 ND2 REMARK 470 SER B 86 OG REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 CYS B 90 SG REMARK 470 VAL B 91 CG1 CG2 REMARK 470 LYS B 92 CG CD CE NZ REMARK 470 GLU B 93 CG CD OE1 OE2 REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 VAL B 118 CG1 CG2 REMARK 470 LYS B 119 CG CD CE NZ REMARK 470 LYS B 141 CE NZ REMARK 470 GLN B 179 CG CD OE1 NE2 REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 LYS B 232 CG CD CE NZ REMARK 470 THR B 234 OG1 CG2 REMARK 470 ASP B 236 CG OD1 OD2 REMARK 470 THR B 237 OG1 CG2 REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 239 CG OD1 ND2 REMARK 470 SER B 264 OG REMARK 470 THR B 268 OG1 CG2 REMARK 470 TYR B 271 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 LYS B 288 CG CD CE NZ REMARK 470 ASN B 290 CG OD1 ND2 REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 LYS B 300 CG CD CE NZ REMARK 470 ARG B 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 311 CG CD CE NZ REMARK 470 ILE B 315 CG1 CG2 CD1 REMARK 470 ASN B 317 CG OD1 ND2 REMARK 470 LEU B 318 CG CD1 CD2 REMARK 470 SER B 319 OG REMARK 470 VAL B 320 CG1 CG2 REMARK 470 LYS B 321 CG CD CE NZ REMARK 470 ASP B 322 CG OD1 OD2 REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 LYS B 329 CG CD CE NZ REMARK 470 MET B 331 CE REMARK 470 ILE B 332 CG1 CG2 CD1 REMARK 470 LYS B 335 CG CD CE NZ REMARK 470 LYS B 376 CG CD CE NZ REMARK 470 LYS B 382 CG CD CE NZ REMARK 470 LYS B 511 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 278 70.43 -153.75 REMARK 500 GLU A 279 23.42 48.41 REMARK 500 ASN A 290 95.20 -67.58 REMARK 500 PHE A 338 -61.31 -132.85 REMARK 500 GLN A 345 3.54 -69.66 REMARK 500 GLN A 346 -77.40 -122.28 REMARK 500 ASP A 354 -7.57 82.42 REMARK 500 GLU A 367 68.05 -108.86 REMARK 500 ASP A 385 168.66 173.04 REMARK 500 GLU A 499 116.66 -170.18 REMARK 500 ASN A 511 155.13 86.63 REMARK 500 LYS A 512 -130.60 54.13 REMARK 500 ILE B 35 89.14 -68.90 REMARK 500 LYS B 94 10.74 83.58 REMARK 500 ARG B 107 67.09 -158.68 REMARK 500 ASN B 138 -76.66 -94.23 REMARK 500 ILE B 225 -65.19 -94.36 REMARK 500 THR B 234 69.57 -158.88 REMARK 500 ASP B 236 16.04 -149.59 REMARK 500 PHE B 297 42.33 -101.96 REMARK 500 ASN B 317 76.96 55.47 REMARK 500 ASN B 447 42.84 -147.72 REMARK 500 ARG B 474 -169.50 -70.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 499 OE2 REMARK 620 2 HOH A 702 O 55.4 REMARK 620 3 GLU B 361 OE1 61.1 89.5 REMARK 620 N 1 2 DBREF 9UIW A 268 569 UNP A5K9S0 SYFA_PLAVS 268 569 DBREF 9UIW B 2 617 UNP A5K464 SYFB_PLAVS 2 617 SEQADV 9UIW MET B 0 UNP A5K464 INITIATING METHIONINE SEQADV 9UIW GLY B 1 UNP A5K464 EXPRESSION TAG SEQRES 1 A 302 ILE THR ASP LEU THR TYR LEU LEU ILE LYS ASN GLU GLU SEQRES 2 A 302 TYR LYS LYS TYR GLN VAL LYS LYS TYR ASN PHE PHE SER SEQRES 3 A 302 SER GLY LYS LYS MET ASN LYS GLY ASN ILE HIS LEU LEU SEQRES 4 A 302 ILE ARG GLN MET ARG THR PHE LYS ASP VAL PHE VAL SER SEQRES 5 A 302 LEU GLY PHE GLU GLU MET ASN THR HIS ASN TYR VAL GLU SEQRES 6 A 302 SER SER PHE TRP CYS PHE ASP ALA LEU TYR ILE PRO GLN SEQRES 7 A 302 GLN HIS PRO SER ARG ASP LEU GLN ASP THR PHE PHE ILE SEQRES 8 A 302 LYS VAL PRO GLU MET CYS GLN GLU GLU PHE THR ASP GLN SEQRES 9 A 302 SER TYR ILE GLU ASN VAL LYS ARG VAL HIS SER VAL GLY SEQRES 10 A 302 ASP TYR GLY SER PHE GLY TRP ASN TYR GLN TRP GLU LEU SEQRES 11 A 302 LYS SER THR LYS LYS ASN VAL LEU ARG THR HIS THR THR SEQRES 12 A 302 ALA ASN SER CYS ARG ALA LEU PHE GLN LEU ALA LYS GLU SEQRES 13 A 302 TYR GLN LYS THR GLY SER ILE ILE PRO LYS LYS PHE PHE SEQRES 14 A 302 SER ILE ASP ARG VAL PHE ARG ASN GLU ASN LEU ASP SER SEQRES 15 A 302 THR HIS LEU ALA GLU PHE HIS GLN VAL GLU GLY LEU ILE SEQRES 16 A 302 ILE ASP ARG ASN LEU GLY LEU SER HIS LEU ILE GLY THR SEQRES 17 A 302 LEU SER ALA PHE TYR LYS TYR ILE GLY ILE SER LYS LEU SEQRES 18 A 302 ARG PHE LYS PRO THR PHE ASN PRO TYR THR GLU PRO SER SEQRES 19 A 302 MET GLU VAL TYR GLY TYR HIS GLU GLU ASN LYS LYS TRP SEQRES 20 A 302 LEU GLU VAL GLY ASN SER GLY ILE PHE ARG PRO GLU MET SEQRES 21 A 302 LEU ARG ALA MET GLY PHE PRO PRO GLU VAL SER VAL ILE SEQRES 22 A 302 ALA TRP GLY LEU SER LEU GLU ARG PRO THR MET ILE LYS SEQRES 23 A 302 TYR SER ILE ARG ASN ILE ARG ASP LEU PHE GLY TYR ARG SEQRES 24 A 302 SER VAL ILE SEQRES 1 B 618 MET GLY PRO THR ILE SER VAL HIS GLU GLU ASP LEU ILE SEQRES 2 B 618 GLU LYS LEU GLY GLU LYS ILE GLU GLU GLU LYS LEU ASN SEQRES 3 B 618 ASP ILE CYS PHE GLU PHE GLY ILE GLU ILE ASP ASP VAL SEQRES 4 B 618 GLU TYR LYS GLY GLU LYS LYS ILE TYR LYS ILE GLU VAL SEQRES 5 B 618 PRO ALA ASN ARG TYR ASP LEU VAL CYS VAL GLU GLY LEU SEQRES 6 B 618 CYS ARG ALA LEU LYS SER PHE ILE GLY LYS TYR GLU ASN SEQRES 7 B 618 VAL SER TYR ALA LEU LEU THR ASN SER GLU GLU ALA CYS SEQRES 8 B 618 VAL LYS GLU LYS HIS PHE MET ARG VAL ASP GLU SER VAL SEQRES 9 B 618 ASP GLU ARG ARG SER TYR VAL VAL SER ALA VAL LEU LYS SEQRES 10 B 618 ASN VAL LYS MET ASN GLU ASN VAL TYR ASN ASN ILE ILE SEQRES 11 B 618 GLU LEU GLN GLU LYS LEU HIS HIS ASN LEU GLY LYS LYS SEQRES 12 B 618 ARG ILE LEU LEU ALA ILE GLY ILE HIS ASP TYR ASP LYS SEQRES 13 B 618 ILE ASN PHE PRO VAL ALA TYR LYS PHE GLU GLU LYS GLU SEQRES 14 B 618 LYS ILE ASN PHE ILE PRO LEU ASN GLU THR GLN ASN VAL SEQRES 15 B 618 ASN GLY ASN ASN PHE ILE ASN PHE TYR GLN ASP ASN ILE SEQRES 16 B 618 ASN LEU LYS SER TYR LEU LYS ILE ILE SER ASP PHE GLU SEQRES 17 B 618 LYS PHE PRO VAL ILE VAL ASP ALA GLY GLY GLN ILE LEU SEQRES 18 B 618 SER LEU PRO PRO ILE ILE ASN CYS ASP TYR THR LYS ILE SEQRES 19 B 618 THR TYR ASP THR ARG ASN LEU PHE ILE GLU CYS THR ALA SEQRES 20 B 618 ILE ASP ARG ASN LYS ALA GLU ILE ALA VAL ASN ILE ILE SEQRES 21 B 618 CYS SER MET LEU SER GLU TYR CYS THR PRO LYS TYR SER SEQRES 22 B 618 ILE HIS SER PHE PHE VAL GLN TYR ASP LYS ASN HIS LYS SEQRES 23 B 618 ALA GLU LYS GLY ASN GLY TYR LEU TYR PRO VAL PHE LYS SEQRES 24 B 618 ASN LYS THR LEU THR CYS HIS MET ASP TYR VAL ARG LYS SEQRES 25 B 618 LEU SER GLY ILE LEU ASN LEU SER VAL LYS ASP VAL GLU SEQRES 26 B 618 PRO LEU LEU LYS LYS MET MET ILE THR SER LYS VAL ILE SEQRES 27 B 618 ASP SER SER THR PHE THR VAL ASP VAL PRO PHE TYR ARG SEQRES 28 B 618 SER ASP ILE MET HIS PHE CYS ASP ILE VAL GLU ASP ILE SEQRES 29 B 618 ALA ILE ALA TYR GLY TYR GLY ASN ILE VAL SER GLU LYS SEQRES 30 B 618 ILE GLU ILE ALA LYS LYS ASN SER LEU SER ALA CYS THR SEQRES 31 B 618 GLU LEU PHE ARG ASN VAL LEU ALA GLU CYS THR TYR THR SEQRES 32 B 618 GLU VAL MET THR ASN ALA LEU LEU SER LYS ARG GLU ASN SEQRES 33 B 618 TYR ASP CME MET LEU ARG LYS HIS ARG SER TYR ASP ASP SEQRES 34 B 618 ARG LYS ILE ASN LEU ASP GLU TYR ASN PRO LEU ALA PRO SEQRES 35 B 618 PRO VAL GLN ILE MET ASN SER LYS THR SER GLU TYR GLU SEQRES 36 B 618 ILE VAL ARG THR SER LEU ILE VAL ASN MET LEU LYS PHE SEQRES 37 B 618 VAL SER ALA ASN LYS HIS ARG GLU LEU PRO LEU ARG PHE SEQRES 38 B 618 PHE GLU ILE GLY ASP VAL SER TYR THR THR TYR ASP ARG SEQRES 39 B 618 THR ASP THR ASN ALA VAL ASN LYS ARG TYR LEU SER VAL SEQRES 40 B 618 ILE PHE ALA ASP LYS PHE THR ALA GLY LEU GLU GLU ALA SEQRES 41 B 618 HIS GLY MET LEU GLU THR VAL LEU LYS GLU PHE GLN LEU SEQRES 42 B 618 PHE SER ASP TYR LYS ILE GLU GLU LYS SER LYS GLU ASN SEQRES 43 B 618 VAL ALA ILE ARG SER ASP VAL PHE TYR LYS LEU VAL PRO SEQRES 44 B 618 LYS GLU ASP PRO SER PHE LEU ASN GLU ARG VAL VAL ASP SEQRES 45 B 618 ILE VAL LEU CME PRO HIS ASN LEU LYS PHE GLY ILE MET SEQRES 46 B 618 GLY ILE ILE HIS PRO LYS VAL LEU GLU ASN PHE SER ILE SEQRES 47 B 618 ASP ILE PRO VAL SER VAL ILE GLU ILE ASN ILE GLU THR SEQRES 48 B 618 ILE MET ASP VAL LEU MET MET MODRES 9UIW CME B 418 CYS MODIFIED RESIDUE MODRES 9UIW CME B 575 CYS MODIFIED RESIDUE HET CME B 418 10 HET CME B 575 10 HET PHE A 601 12 HET CL A 602 1 HET SO4 A 603 5 HET MG B 701 1 HET CL B 702 1 HET GOL B 703 6 HET MG B 704 1 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM PHE PHENYLALANINE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CME 2(C5 H11 N O3 S2) FORMUL 3 PHE C9 H11 N O2 FORMUL 4 CL 2(CL 1-) FORMUL 5 SO4 O4 S 2- FORMUL 6 MG 2(MG 2+) FORMUL 8 GOL C3 H8 O3 FORMUL 10 HOH *63(H2 O) HELIX 1 AA1 HIS A 304 LEU A 320 1 17 HELIX 2 AA2 SER A 334 PHE A 338 1 5 HELIX 3 AA3 ASP A 339 TYR A 342 5 4 HELIX 4 AA4 ASP A 370 VAL A 383 1 14 HELIX 5 AA5 GLU A 396 LYS A 401 1 6 HELIX 6 AA6 THR A 409 GLY A 428 1 20 HELIX 7 AA7 GLY A 468 ILE A 483 1 16 HELIX 8 AA8 ARG A 524 MET A 531 1 8 HELIX 9 AA9 LEU A 546 TYR A 554 1 9 HELIX 10 AB1 ASN A 558 PHE A 563 1 6 HELIX 11 AB2 GLU B 8 LEU B 15 1 8 HELIX 12 AB3 GLU B 20 GLY B 32 1 13 HELIX 13 AB4 ARG B 55 VAL B 59 5 5 HELIX 14 AB5 CYS B 60 GLY B 73 1 14 HELIX 15 AB6 SER B 86 LYS B 94 1 9 HELIX 16 AB7 ASN B 121 ASN B 138 1 18 HELIX 17 AB8 ASP B 154 ILE B 156 5 3 HELIX 18 AB9 ASN B 185 GLN B 191 1 7 HELIX 19 AC1 LEU B 196 ILE B 203 5 8 HELIX 20 AC2 ASP B 248 SER B 264 1 17 HELIX 21 AC3 GLU B 265 CYS B 267 5 3 HELIX 22 AC4 MET B 306 SER B 313 1 8 HELIX 23 AC5 SER B 319 MET B 330 1 12 HELIX 24 AC6 HIS B 355 GLY B 368 1 14 HELIX 25 AC7 TYR B 369 ILE B 372 5 4 HELIX 26 AC8 ASN B 383 GLU B 398 1 16 HELIX 27 AC9 SER B 411 TYR B 416 1 6 HELIX 28 AD1 LEU B 460 ASN B 471 1 12 HELIX 29 AD2 GLY B 515 PHE B 530 1 16 HELIX 30 AD3 SER B 534 GLU B 544 1 11 HELIX 31 AD4 HIS B 588 PHE B 595 1 8 HELIX 32 AD5 ILE B 608 MET B 612 1 5 HELIX 33 AD6 ASP B 613 LEU B 615 5 3 SHEET 1 AA1 7 GLU A 323 GLU A 324 0 SHEET 2 AA1 7 LYS A 433 PHE A 442 1 O LYS A 434 N GLU A 323 SHEET 3 AA1 7 GLU A 454 ARG A 465 -1 O ILE A 463 N LYS A 433 SHEET 4 AA1 7 VAL A 537 SER A 545 -1 O LEU A 544 N VAL A 458 SHEET 5 AA1 7 LEU A 515 PHE A 523 -1 N GLY A 521 O ALA A 541 SHEET 6 AA1 7 THR A 498 TYR A 507 -1 N VAL A 504 O VAL A 517 SHEET 7 AA1 7 LYS A 487 ASN A 495 -1 N ARG A 489 O TYR A 505 SHEET 1 AA2 2 VAL A 331 SER A 333 0 SHEET 2 AA2 2 ASN A 403 LEU A 405 -1 O VAL A 404 N GLU A 332 SHEET 1 AA3 3 THR B 3 HIS B 7 0 SHEET 2 AA3 3 LYS B 45 GLU B 50 -1 O TYR B 47 N VAL B 6 SHEET 3 AA3 3 GLU B 34 TYR B 40 -1 N GLU B 39 O ILE B 46 SHEET 1 AA4 2 ALA B 81 LEU B 83 0 SHEET 2 AA4 2 SER B 272 HIS B 274 1 O ILE B 273 N ALA B 81 SHEET 1 AA5 7 ILE B 226 ASN B 227 0 SHEET 2 AA5 7 ILE B 219 LEU B 222 -1 N LEU B 222 O ILE B 226 SHEET 3 AA5 7 LYS B 208 ASP B 214 -1 N ILE B 212 O LEU B 220 SHEET 4 AA5 7 VAL B 160 GLU B 166 -1 N ALA B 161 O VAL B 213 SHEET 5 AA5 7 PHE B 96 VAL B 99 1 N PHE B 96 O VAL B 160 SHEET 6 AA5 7 PHE B 276 TYR B 280 1 O GLN B 279 N MET B 97 SHEET 7 AA5 7 GLY B 291 TYR B 294 -1 O TYR B 294 N PHE B 276 SHEET 1 AA6 3 TYR B 109 LYS B 116 0 SHEET 2 AA6 3 ASN B 239 ALA B 246 -1 O ILE B 242 N ALA B 113 SHEET 3 AA6 3 LEU B 146 ASP B 152 -1 N GLY B 149 O GLU B 243 SHEET 1 AA7 2 ASN B 171 PHE B 172 0 SHEET 2 AA7 2 VAL B 181 ASN B 182 -1 O VAL B 181 N PHE B 172 SHEET 1 AA8 3 LYS B 300 HIS B 305 0 SHEET 2 AA8 3 THR B 341 VAL B 346 -1 O PHE B 342 N CYS B 304 SHEET 3 AA8 3 THR B 333 ASP B 338 -1 N LYS B 335 O THR B 343 SHEET 1 AA9 7 THR B 402 GLU B 403 0 SHEET 2 AA9 7 LEU B 478 THR B 489 1 O ARG B 479 N THR B 402 SHEET 3 AA9 7 ALA B 498 ALA B 509 -1 O TYR B 503 N GLY B 484 SHEET 4 AA9 7 VAL B 601 ASN B 607 -1 O SER B 602 N PHE B 508 SHEET 5 AA9 7 LEU B 579 ILE B 587 -1 N GLY B 585 O VAL B 603 SHEET 6 AA9 7 PHE B 564 CME B 575 -1 N VAL B 570 O MET B 584 SHEET 7 AA9 7 PHE B 553 PRO B 558 -1 N VAL B 557 O ASP B 571 SHEET 1 AB1 2 LEU B 409 LEU B 410 0 SHEET 2 AB1 2 ILE B 455 VAL B 456 -1 O ILE B 455 N LEU B 410 LINK C ASP B 417 N CME B 418 1555 1555 1.33 LINK C CME B 418 N MET B 419 1555 1555 1.34 LINK C LEU B 574 N CME B 575 1555 1555 1.34 LINK C CME B 575 N PRO B 576 1555 1555 1.35 LINK OE2 GLU A 499 MG MG B 701 1555 1555 2.55 LINK O BHOH A 702 MG MG B 701 1555 1555 2.51 LINK OE1 GLU B 50 MG MG B 704 1555 1555 2.95 LINK OE1 GLU B 361 MG MG B 701 1555 1555 2.42 CISPEP 1 VAL A 360 PRO A 361 0 -0.51 CISPEP 2 GLU A 499 PRO A 500 0 -1.63 CISPEP 3 PHE B 158 PRO B 159 0 2.57 CISPEP 4 PRO B 223 PRO B 224 0 -0.04 CISPEP 5 TYR B 294 PRO B 295 0 -5.41 CISPEP 6 LEU B 476 PRO B 477 0 -3.91 CISPEP 7 CME B 575 PRO B 576 0 1.29 CRYST1 73.720 136.170 120.840 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013565 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007344 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008275 0.00000 CONECT 1902 7285 CONECT 2814 7293 CONECT 5191 7285 CONECT 5621 5627 CONECT 5627 5621 5628 CONECT 5628 5627 5629 5635 CONECT 5629 5628 5630 CONECT 5630 5629 5631 CONECT 5631 5630 5632 CONECT 5632 5631 5633 CONECT 5633 5632 5634 CONECT 5634 5633 CONECT 5635 5628 5636 5637 CONECT 5636 5635 CONECT 5637 5635 CONECT 6918 6924 CONECT 6924 6918 6925 CONECT 6925 6924 6926 6932 CONECT 6926 6925 6927 CONECT 6927 6926 6928 CONECT 6928 6927 6929 CONECT 6929 6928 6930 CONECT 6930 6929 6931 CONECT 6931 6930 CONECT 6932 6925 6933 6934 CONECT 6933 6932 CONECT 6934 6932 CONECT 7280 7281 7282 7283 7284 CONECT 7281 7280 CONECT 7282 7280 CONECT 7283 7280 CONECT 7284 7280 CONECT 7285 1902 5191 7295 CONECT 7287 7288 7289 CONECT 7288 7287 CONECT 7289 7287 7290 7291 CONECT 7290 7289 CONECT 7291 7289 7292 CONECT 7292 7291 CONECT 7293 2814 CONECT 7295 7285 MASTER 364 0 9 33 38 0 0 6 7345 2 41 72 END