HEADER RNA BINDING PROTEIN 17-APR-25 9UJU TITLE THE STRUCTURE OF EGALITARIAN IN COMPLEX WITH THE K10 MRNA LOCALIZATION TITLE 2 SIGNAL REVEALS A MODULAR BINDING SURFACE REQUIRED FOR FUNCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (46-MER); COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: EGALITARIAN, ISOFORM B; COMPND 7 CHAIN: C, A; COMPND 8 SYNONYM: EGALITARIAN,ISOFORM C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: ALA-LEU-GLU-PHE-ALA; COMPND 12 CHAIN: X; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_TAXID: 7227; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 8 ORGANISM_COMMON: FRUIT FLY; SOURCE 9 ORGANISM_TAXID: 7227; SOURCE 10 GENE: EGL, DMEL\CG4051, EGAL, EGL, EGL, CG4051, DMEL_CG4051; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 15 ORGANISM_TAXID: 7227; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RNA, LOCALIZATION, DROSOPHILA, EGALITARIAN, CRISPR, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.HONG,J.MUEHLE,F.BONO REVDAT 1 29-APR-26 9UJU 0 JRNL AUTH Z.HONG,L.JIN,J.MUHLE,F.BONO JRNL TITL THE STRUCTURE OF EGALITARIAN IN COMPLEX WITH THE JRNL TITL 2 K10 MRNA LOCALIZATION SIGNAL REVEALS A MODULAR JRNL TITL 3 BINDING SURFACE REQUIRED FOR FUNCTION JRNL REF BIORXIV 2026 JRNL REFN ISSN 2692-8205 JRNL DOI 10.1101/2025.08.03.668247 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.17.1_3660: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.243 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4800 - 5.8900 1.00 2810 149 0.2277 0.2682 REMARK 3 2 5.8800 - 4.6700 1.00 2692 141 0.2422 0.2841 REMARK 3 3 4.6700 - 4.0800 1.00 2652 140 0.2176 0.2862 REMARK 3 4 4.0800 - 3.7100 1.00 2644 139 0.2295 0.2789 REMARK 3 5 3.7100 - 3.4400 1.00 2623 138 0.2541 0.3309 REMARK 3 6 3.4400 - 3.2400 1.00 2617 138 0.2853 0.3750 REMARK 3 7 3.2400 - 3.0800 0.99 2600 137 0.3271 0.3590 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 6082 REMARK 3 ANGLE : 2.026 8714 REMARK 3 CHIRALITY : 0.110 1124 REMARK 3 PLANARITY : 0.009 787 REMARK 3 DIHEDRAL : 16.981 2404 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 5.6880 -4.6914 -30.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.4400 T22: 0.4855 REMARK 3 T33: 0.5316 T12: 0.0656 REMARK 3 T13: -0.0271 T23: 0.1349 REMARK 3 L TENSOR REMARK 3 L11: -0.4259 L22: -0.1038 REMARK 3 L33: 0.6390 L12: 1.1027 REMARK 3 L13: -0.0999 L23: -0.8706 REMARK 3 S TENSOR REMARK 3 S11: -0.2409 S12: 0.1434 S13: -0.0141 REMARK 3 S21: 0.0166 S22: 0.4003 S23: 0.7347 REMARK 3 S31: -0.0436 S32: -0.4704 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-APR-25. REMARK 100 THE DEPOSITION ID IS D_1300058346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36673 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.020 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 0.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ITASSER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM SODIUM CITRATE, PH 4.8, 30% REMARK 280 (W/V) MPD, 10 MM CACL2, 2.5 MM SPERMINE, EVAPORATION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.25200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.90850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.39950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.90850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.25200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.39950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U B 23 REMARK 465 A B 24 REMARK 465 PRO C 512 REMARK 465 SER C 513 REMARK 465 HIS C 514 REMARK 465 SER C 515 REMARK 465 TYR C 516 REMARK 465 PHE C 517 REMARK 465 VAL C 518 REMARK 465 GLY C 519 REMARK 465 LEU C 790 REMARK 465 ARG C 791 REMARK 465 TYR C 792 REMARK 465 MET C 793 REMARK 465 ASP C 794 REMARK 465 LEU C 795 REMARK 465 THR C 796 REMARK 465 GLU C 797 REMARK 465 ASP C 798 REMARK 465 GLU C 799 REMARK 465 LYS C 800 REMARK 465 GLU C 801 REMARK 465 ARG C 802 REMARK 465 LEU C 803 REMARK 465 LYS C 804 REMARK 465 GLY C 805 REMARK 465 TYR C 806 REMARK 465 TYR C 807 REMARK 465 LYS C 808 REMARK 465 VAL C 809 REMARK 465 ALA C 810 REMARK 465 LYS C 811 REMARK 465 LYS C 812 REMARK 465 LEU C 813 REMARK 465 GLU C 814 REMARK 465 LYS C 815 REMARK 465 MET C 816 REMARK 465 GLU C 817 REMARK 465 SER C 818 REMARK 465 ALA C 819 REMARK 465 GLY C 820 REMARK 465 ASN C 821 REMARK 465 PRO C 822 REMARK 465 PRO A 512 REMARK 465 SER A 513 REMARK 465 HIS A 514 REMARK 465 SER A 515 REMARK 465 TYR A 516 REMARK 465 PHE A 517 REMARK 465 VAL A 518 REMARK 465 GLY A 519 REMARK 465 LEU A 776 REMARK 465 LEU A 793 REMARK 465 ARG A 794 REMARK 465 TYR A 795 REMARK 465 MET A 796 REMARK 465 ASP A 797 REMARK 465 LEU A 798 REMARK 465 THR A 799 REMARK 465 GLU A 800 REMARK 465 ASP A 801 REMARK 465 GLU A 802 REMARK 465 LYS A 803 REMARK 465 GLU A 804 REMARK 465 ARG A 805 REMARK 465 LEU A 806 REMARK 465 LYS A 807 REMARK 465 GLY A 808 REMARK 465 TYR A 809 REMARK 465 TYR A 810 REMARK 465 LYS A 811 REMARK 465 VAL A 812 REMARK 465 ALA A 813 REMARK 465 LYS A 814 REMARK 465 LYS A 815 REMARK 465 LEU A 816 REMARK 465 GLU A 817 REMARK 465 LYS A 818 REMARK 465 MET A 819 REMARK 465 GLU A 820 REMARK 465 SER A 821 REMARK 465 ALA A 822 REMARK 465 GLY A 823 REMARK 465 ASN A 824 REMARK 465 PRO A 825 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U D 23 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U D 23 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U D 23 C5 C6 REMARK 470 ASP C 520 CG OD1 OD2 REMARK 470 THR C 521 OG1 CG2 REMARK 470 LYS C 523 CG CD CE NZ REMARK 470 ILE C 524 CG1 CG2 CD1 REMARK 470 LYS C 525 CG CD CE NZ REMARK 470 LYS C 537 CG CD CE NZ REMARK 470 LYS C 548 CG CD CE NZ REMARK 470 LYS C 552 CG CD CE NZ REMARK 470 ASN C 553 CG OD1 ND2 REMARK 470 GLU C 554 CG CD OE1 OE2 REMARK 470 SER C 555 OG REMARK 470 LEU C 569 CG CD1 CD2 REMARK 470 LYS C 570 CG CD CE NZ REMARK 470 GLN C 610 CG CD OE1 NE2 REMARK 470 GLU C 650 CG CD OE1 OE2 REMARK 470 SER C 651 OG REMARK 470 LYS C 653 CG CD CE NZ REMARK 470 GLN C 654 CG CD OE1 NE2 REMARK 470 LYS C 657 CG CD CE NZ REMARK 470 LYS C 659 CG CD CE NZ REMARK 470 GLU C 668 CG CD OE1 OE2 REMARK 470 ASN C 671 CG OD1 ND2 REMARK 470 LYS C 682 CG CD CE NZ REMARK 470 GLN C 683 CG CD OE1 NE2 REMARK 470 ARG C 687 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 690 CG CD CE NZ REMARK 470 LYS C 694 CG CD CE NZ REMARK 470 ARG C 695 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 699 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 700 CG CD OE1 OE2 REMARK 470 GLN C 716 CG CD OE1 NE2 REMARK 470 LYS C 726 CG CD CE NZ REMARK 470 LYS C 755 CG CD CE NZ REMARK 470 GLN C 756 CG CD OE1 NE2 REMARK 470 VAL C 759 CG1 CG2 REMARK 470 SER C 760 OG REMARK 470 GLU C 762 CG CD OE1 OE2 REMARK 470 LEU C 766 CG CD1 CD2 REMARK 470 GLN C 768 CG CD OE1 NE2 REMARK 470 LYS C 769 CG CD CE NZ REMARK 470 LEU C 770 CG CD1 CD2 REMARK 470 GLN C 772 CG CD OE1 NE2 REMARK 470 THR C 773 OG1 CG2 REMARK 470 SER C 777 OG REMARK 470 LYS C 778 CG CD CE NZ REMARK 470 SER C 779 OG REMARK 470 ILE C 780 CG1 CG2 CD1 REMARK 470 LEU C 782 CG CD1 CD2 REMARK 470 SER C 783 OG REMARK 470 ASN C 784 CG OD1 ND2 REMARK 470 ARG C 785 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 786 CG CD OE1 OE2 REMARK 470 ILE C 787 CG1 CG2 CD1 REMARK 470 ARG C 788 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 789 CG CD1 CD2 REMARK 470 ASP A 520 CG OD1 OD2 REMARK 470 THR A 521 OG1 CG2 REMARK 470 LYS A 523 CG CD CE NZ REMARK 470 ILE A 524 CG1 CG2 CD1 REMARK 470 LYS A 525 CG CD CE NZ REMARK 470 GLN A 528 CG CD OE1 NE2 REMARK 470 LYS A 537 CG CD CE NZ REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 ILE A 565 CG1 CG2 CD1 REMARK 470 GLU A 572 CG CD OE1 OE2 REMARK 470 ARG A 582 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 ARG A 634 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 646 CG CD1 CD2 REMARK 470 TYR A 648 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 650 CG CD OE1 OE2 REMARK 470 SER A 651 OG REMARK 470 LYS A 653 CG CD CE NZ REMARK 470 GLN A 654 CG CD OE1 NE2 REMARK 470 VAL A 655 CG1 CG2 REMARK 470 LYS A 657 CG CD CE NZ REMARK 470 LYS A 659 CG CD CE NZ REMARK 470 LEU A 666 CG CD1 CD2 REMARK 470 ASN A 671 CG OD1 ND2 REMARK 470 GLN A 683 CG CD OE1 NE2 REMARK 470 ARG A 687 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 690 CG CD CE NZ REMARK 470 LYS A 694 CG CD CE NZ REMARK 470 ARG A 695 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 697 CG CD1 CD2 REMARK 470 ARG A 699 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 700 CG CD OE1 OE2 REMARK 470 GLN A 716 CG CD OE1 NE2 REMARK 470 ASN A 720 CG OD1 ND2 REMARK 470 LEU A 721 CG CD1 CD2 REMARK 470 ARG A 723 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 726 CG CD CE NZ REMARK 470 GLU A 728 CG CD OE1 OE2 REMARK 470 ARG A 730 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 732 CG CD1 CD2 REMARK 470 LEU A 736 CG CD1 CD2 REMARK 470 LYS A 746 CG CD CE NZ REMARK 470 LYS A 751 CG CD CE NZ REMARK 470 LYS A 755 CG CD CE NZ REMARK 470 ARG A 757 CG CD NE CZ NH1 NH2 REMARK 470 SER A 760 OG REMARK 470 SER A 764 OG REMARK 470 LEU A 766 CG CD1 CD2 REMARK 470 LYS A 767 CG CD CE NZ REMARK 470 GLN A 768 CG CD OE1 NE2 REMARK 470 LYS A 769 CG CD CE NZ REMARK 470 GLN A 778 CG CD OE1 NE2 REMARK 470 THR A 779 OG1 CG2 REMARK 470 LYS A 781 CG CD CE NZ REMARK 470 SER A 782 OG REMARK 470 ILE A 783 CG1 CG2 CD1 REMARK 470 ASN A 784 CG OD1 ND2 REMARK 470 LEU A 785 CG CD1 CD2 REMARK 470 SER A 786 OG REMARK 470 ASN A 787 CG OD1 ND2 REMARK 470 ARG A 788 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 789 CG CD OE1 OE2 REMARK 470 ILE A 790 CG1 CG2 CD1 REMARK 470 ARG A 791 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 792 CG CD1 CD2 REMARK 470 LEU X-137 CG CD1 CD2 REMARK 470 GLU X-136 CG CD OE1 OE2 REMARK 470 PHE X-135 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 563 O HOH A 1001 1.89 REMARK 500 O2 U D 8 N1 A D 41 2.14 REMARK 500 O GLN C 716 ND2 ASN C 720 2.14 REMARK 500 OG SER A 559 O VAL A 709 2.15 REMARK 500 OD2 ASP A 708 O HOH A 1001 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4' U B 25 OP2 U D 23 3444 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 C D 47 O3' C D 48 P -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A D 7 O5' - P - OP1 ANGL. DEV. = 9.5 DEGREES REMARK 500 A D 7 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 C D 47 O5' - P - OP2 ANGL. DEV. = -6.6 DEGREES REMARK 500 C D 48 O5' - P - OP1 ANGL. DEV. = 10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 567 121.89 -39.41 REMARK 500 LYS C 570 42.08 -104.44 REMARK 500 THR C 598 -72.67 -91.16 REMARK 500 ASP C 617 76.26 59.08 REMARK 500 LEU C 717 -71.11 -101.17 REMARK 500 ALA A 534 23.79 -140.15 REMARK 500 GLU A 554 17.83 52.90 REMARK 500 SER A 555 112.39 -170.53 REMARK 500 GLN A 628 -61.05 -101.63 REMARK 500 ARG A 687 -61.70 -90.39 REMARK 500 ARG A 695 -72.21 -59.56 REMARK 500 ASN A 729 23.04 -141.66 REMARK 500 GLU A 789 63.97 -105.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 102 O REMARK 620 2 ASP A 561 OD1 61.5 REMARK 620 3 HIS A 616 O 109.5 169.4 REMARK 620 4 HOH A1004 O 144.3 96.9 87.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 904 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C D 47 O3' REMARK 620 2 HOH D 204 O 56.0 REMARK 620 3 ASP C 561 OD1 88.9 69.6 REMARK 620 4 HOH C1004 O 157.5 135.2 80.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 561 OD2 REMARK 620 2 GLU C 563 OE1 64.7 REMARK 620 3 ASP C 708 OD2 74.8 137.8 REMARK 620 N 1 2 DBREF 9UJU B 1 48 PDB 9UJU 9UJU 1 48 DBREF 9UJU D 1 48 PDB 9UJU 9UJU 1 48 DBREF 9UJU C 512 822 UNP Q9W1K4 Q9W1K4_DROME 512 819 DBREF 9UJU A 512 825 UNP Q9W1K4 Q9W1K4_DROME 512 819 DBREF 9UJU X -138 -134 PDB 9UJU 9UJU -138 -134 SEQADV 9UJU ASN C 781 UNP Q9W1K4 VAL 778 CONFLICT SEQADV 9UJU ASN A 784 UNP Q9W1K4 VAL 778 CONFLICT SEQRES 1 B 48 G G C U U G A U U G U A U SEQRES 2 B 48 U U U U A A A U U U A U U SEQRES 3 B 48 C U U A A A A A C U A C A SEQRES 4 B 48 A A U U A A G C C SEQRES 1 D 48 G G C U U G A U U G U A U SEQRES 2 D 48 U U U U A A A U U U A U U SEQRES 3 D 48 C U U A A A A A C U A C A SEQRES 4 D 48 A A U U A A G C C SEQRES 1 C 308 PRO SER HIS SER TYR PHE VAL GLY ASP THR TRP LYS ILE SEQRES 2 C 308 LYS VAL LEU GLN ASN THR THR VAL ILE ALA ASN VAL LYS SEQRES 3 C 308 GLN SER VAL PHE VAL THR ASP ILE ILE LEU LYS TYR ALA SEQRES 4 C 308 ALA LYS ASN GLU SER ILE VAL VAL SER LEU ASP CYS GLU SEQRES 5 C 308 GLY ILE ASN LEU GLY LEU LYS GLY GLU ILE THR LEU ILE SEQRES 6 C 308 GLU ILE GLY THR THR ARG GLY GLU ALA PHE LEU PHE ASP SEQRES 7 C 308 VAL GLN SER CYS PRO ALA MET VAL THR ASP GLY GLY LEU SEQRES 8 C 308 LYS THR VAL LEU GLU HIS ASP GLN VAL ILE LYS VAL ILE SEQRES 9 C 308 HIS ASP CYS ARG ASN ASP ALA ALA ASN LEU TYR LEU GLN SEQRES 10 C 308 PHE GLY ILE LEU LEU ARG ASN VAL PHE ASP THR GLN ALA SEQRES 11 C 308 ALA HIS ALA ILE LEU GLN TYR GLN GLU SER GLY LYS GLN SEQRES 12 C 308 VAL TYR LYS ALA LYS TYR ILE SER LEU ASN SER LEU CYS SEQRES 13 C 308 GLU GLN TYR ASN ALA PRO CYS ASN PRO ILE LYS ASP GLN SEQRES 14 C 308 LEU LYS GLN ILE TYR ARG ARG ASP GLN LYS PHE TRP ALA SEQRES 15 C 308 LYS ARG PRO LEU THR ARG GLU MET MET LEU TYR ALA ALA SEQRES 16 C 308 GLY ASP VAL LEU VAL LEU ILE HIS ASP GLN LEU PHE GLY SEQRES 17 C 308 ASN LEU ALA ARG GLN ILE LYS PRO GLU ASN ARG ALA LEU SEQRES 18 C 308 PHE SER GLU LEU CYS THR GLU GLN ILE LEU MET GLN ILE SEQRES 19 C 308 LYS PRO ASN GLU VAL LYS ILE ARG LYS LYS GLN ARG LYS SEQRES 20 C 308 VAL SER THR GLU VAL SER ASP LEU LYS GLN LYS LEU ALA SEQRES 21 C 308 GLN THR SER LYS SER ILE ASN LEU SER ASN ARG GLU ILE SEQRES 22 C 308 ARG LEU LEU ARG TYR MET ASP LEU THR GLU ASP GLU LYS SEQRES 23 C 308 GLU ARG LEU LYS GLY TYR TYR LYS VAL ALA LYS LYS LEU SEQRES 24 C 308 GLU LYS MET GLU SER ALA GLY ASN PRO SEQRES 1 A 308 PRO SER HIS SER TYR PHE VAL GLY ASP THR TRP LYS ILE SEQRES 2 A 308 LYS VAL LEU GLN ASN THR THR VAL ILE ALA ASN VAL LYS SEQRES 3 A 308 GLN SER VAL PHE VAL THR ASP ILE ILE LEU LYS TYR ALA SEQRES 4 A 308 ALA LYS ASN GLU SER ILE VAL VAL SER LEU ASP CYS GLU SEQRES 5 A 308 GLY ILE ASN LEU GLY LEU LYS GLY GLU ILE THR LEU ILE SEQRES 6 A 308 GLU ILE GLY THR THR ARG GLY GLU ALA PHE LEU PHE ASP SEQRES 7 A 308 VAL GLN SER CYS PRO ALA MET VAL THR ASP GLY GLY LEU SEQRES 8 A 308 LYS THR VAL LEU GLU HIS ASP GLN VAL ILE LYS VAL ILE SEQRES 9 A 308 HIS ASP CYS ARG ASN ASP ALA ALA ASN LEU TYR LEU GLN SEQRES 10 A 308 PHE GLY ILE LEU LEU ARG ASN VAL PHE ASP THR GLN ALA SEQRES 11 A 308 ALA HIS ALA ILE LEU GLN TYR GLN GLU SER GLY LYS GLN SEQRES 12 A 308 VAL TYR LYS ALA LYS TYR ILE SER LEU ASN SER LEU CYS SEQRES 13 A 308 GLU GLN TYR ASN ALA PRO CYS ASN PRO ILE LYS ASP GLN SEQRES 14 A 308 LEU LYS GLN ILE TYR ARG ARG ASP GLN LYS PHE TRP ALA SEQRES 15 A 308 LYS ARG PRO LEU THR ARG GLU MET MET LEU TYR ALA ALA SEQRES 16 A 308 GLY ASP VAL LEU VAL LEU ILE HIS ASP GLN LEU PHE GLY SEQRES 17 A 308 ASN LEU ALA ARG GLN ILE LYS PRO GLU ASN ARG ALA LEU SEQRES 18 A 308 PHE SER GLU LEU CYS THR GLU GLN ILE LEU MET GLN ILE SEQRES 19 A 308 LYS PRO ASN GLU VAL LYS ILE ARG LYS LYS GLN ARG LYS SEQRES 20 A 308 VAL SER THR GLU VAL SER ASP LEU LYS GLN LYS LEU ALA SEQRES 21 A 308 GLN THR SER LYS SER ILE ASN LEU SER ASN ARG GLU ILE SEQRES 22 A 308 ARG LEU LEU ARG TYR MET ASP LEU THR GLU ASP GLU LYS SEQRES 23 A 308 GLU ARG LEU LYS GLY TYR TYR LYS VAL ALA LYS LYS LEU SEQRES 24 A 308 GLU LYS MET GLU SER ALA GLY ASN PRO SEQRES 1 X 5 ALA LEU GLU PHE ALA HET CA D 101 1 HET CA C 901 1 HET CA C 902 1 HET CA C 903 1 HET CA C 904 1 HET CA C 905 1 HET CA A 901 1 HET CA A 902 1 HETNAM CA CALCIUM ION FORMUL 6 CA 8(CA 2+) FORMUL 14 HOH *17(H2 O) HELIX 1 AA1 TRP C 522 ASN C 529 1 8 HELIX 2 AA2 ASN C 535 ASN C 553 1 19 HELIX 3 AA3 PRO C 594 ASP C 599 1 6 HELIX 4 AA4 GLY C 601 GLU C 607 1 7 HELIX 5 AA5 CYS C 618 GLY C 630 1 13 HELIX 6 AA6 THR C 639 SER C 651 1 13 HELIX 7 AA7 GLN C 654 ALA C 658 5 5 HELIX 8 AA8 SER C 662 TYR C 670 1 9 HELIX 9 AA9 ILE C 677 ASP C 679 5 3 HELIX 10 AB1 GLN C 680 ASP C 688 1 9 HELIX 11 AB2 LYS C 690 LYS C 694 5 5 HELIX 12 AB3 THR C 698 HIS C 714 1 17 HELIX 13 AB4 LEU C 717 ILE C 725 1 9 HELIX 14 AB5 LYS C 726 GLU C 728 5 3 HELIX 15 AB6 ASN C 729 MET C 743 1 15 HELIX 16 AB7 LYS C 746 ALA C 771 1 26 HELIX 17 AB8 ILE C 780 LEU C 789 1 10 HELIX 18 AB9 TRP A 522 GLN A 528 1 7 HELIX 19 AC1 ASN A 535 ASN A 553 1 19 HELIX 20 AC2 CYS A 593 VAL A 597 5 5 HELIX 21 AC3 GLY A 601 HIS A 608 1 8 HELIX 22 AC4 ASP A 617 PHE A 629 1 13 HELIX 23 AC5 THR A 639 SER A 651 1 13 HELIX 24 AC6 GLN A 654 ALA A 658 5 5 HELIX 25 AC7 SER A 662 TYR A 670 1 9 HELIX 26 AC8 ILE A 677 ASP A 679 5 3 HELIX 27 AC9 GLN A 680 ASP A 688 1 9 HELIX 28 AD1 LYS A 690 LYS A 694 5 5 HELIX 29 AD2 THR A 698 HIS A 714 1 17 HELIX 30 AD3 HIS A 714 ILE A 725 1 12 HELIX 31 AD4 LYS A 726 GLU A 728 5 3 HELIX 32 AD5 ASN A 729 MET A 743 1 15 HELIX 33 AD6 LYS A 746 LYS A 769 1 24 HELIX 34 AD7 SER A 780 GLU A 789 1 10 SHEET 1 AA1 6 THR C 530 ILE C 533 0 SHEET 2 AA1 6 ALA C 585 ASP C 589 1 O ALA C 585 N THR C 531 SHEET 3 AA1 6 GLU C 572 GLY C 579 -1 N ILE C 578 O PHE C 586 SHEET 4 AA1 6 ILE C 556 ILE C 565 -1 N ILE C 565 O GLU C 572 SHEET 5 AA1 6 VAL C 611 ILE C 615 1 O ILE C 612 N ILE C 556 SHEET 6 AA1 6 VAL C 636 ASP C 638 1 O PHE C 637 N LYS C 613 SHEET 1 AA2 6 THR A 530 ILE A 533 0 SHEET 2 AA2 6 ALA A 585 ASP A 589 1 O ASP A 589 N ILE A 533 SHEET 3 AA2 6 GLU A 572 THR A 580 -1 N ILE A 578 O PHE A 586 SHEET 4 AA2 6 ILE A 556 ILE A 565 -1 N SER A 559 O GLY A 579 SHEET 5 AA2 6 VAL A 611 ILE A 615 1 O ILE A 612 N ILE A 556 SHEET 6 AA2 6 VAL A 636 ASP A 638 1 O PHE A 637 N LYS A 613 LINK O HOH B 102 CA CA A 902 1555 1555 2.58 LINK O4 U D 5 CA CA D 101 1555 1555 2.61 LINK O3' C D 47 CA CA C 904 1555 1555 3.04 LINK O HOH D 204 CA CA C 904 1555 1555 2.75 LINK OD1 ASP C 561 CA CA C 904 1555 1555 2.65 LINK OD2 ASP C 561 CA CA C 905 1555 1555 2.71 LINK OE1 GLU C 563 CA CA C 905 1555 1555 2.33 LINK OD2 ASP C 708 CA CA C 905 1555 1555 2.19 LINK CA CA C 904 O HOH C1004 1555 1555 2.93 LINK OD1 ASP A 561 CA CA A 902 1555 1555 2.68 LINK O HIS A 616 CA CA A 902 1555 1555 3.14 LINK O ARG A 695 CA CA A 901 1555 1555 3.14 LINK CA CA A 902 O HOH A1004 1555 1555 2.82 CRYST1 68.504 106.799 139.817 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009363 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007152 0.00000 CONECT 1066 5809 CONECT 1924 5813 CONECT 2250 5813 CONECT 2251 5814 CONECT 2265 5814 CONECT 3343 5814 CONECT 4200 5816 CONECT 4590 5816 CONECT 5183 5815 CONECT 5809 1066 CONECT 5813 1924 2250 5822 5826 CONECT 5814 2251 2265 3343 CONECT 5815 5183 CONECT 5816 4200 4590 5818 5831 CONECT 5818 5816 CONECT 5822 5813 CONECT 5826 5813 CONECT 5831 5816 MASTER 574 0 8 34 12 0 0 6 5828 5 18 57 END