HEADER VIRAL PROTEIN/DNA 27-APR-25 9UP1 TITLE TACHENG TICK VIRUS 1 NUCLEOPROTEIN-NUCLE ACID COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NUCLEOCAPSID PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*CP*TP*CP*CP*CP*GP*CP*AP*CP*TP*TP*C)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*CP*GP*TP*AP*AP*TP*CP*C)-3'); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TACHENG TICK VIRUS 1; SOURCE 3 ORGANISM_TAXID: 1608083; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 9 ORGANISM_TAXID: 2853804; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 13 ORGANISM_TAXID: 2853804 KEYWDS NAIROVIRUS, NUCLEPROTEIN, COMPLEX, VIRAL PROTEIN/DNA, VIRAL PROTEIN- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,L.SUN REVDAT 1 29-APR-26 9UP1 0 JRNL AUTH Z.LI,L.SUN JRNL TITL TACHENG TICK VIRUS 1 NUCLEOPROTEIN-NUCLE ACID COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35941 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.770 REMARK 3 FREE R VALUE TEST SET COUNT : 1715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4200 - 5.7300 1.00 2906 192 0.1721 0.2389 REMARK 3 2 5.7200 - 4.5500 1.00 2867 154 0.1731 0.2068 REMARK 3 3 4.5500 - 3.9700 1.00 2875 160 0.1568 0.2156 REMARK 3 4 3.9700 - 3.6100 1.00 2856 148 0.1781 0.2931 REMARK 3 5 3.6100 - 3.3500 1.00 2837 141 0.2050 0.2737 REMARK 3 6 3.3500 - 3.1500 1.00 2852 156 0.2375 0.3255 REMARK 3 7 3.1500 - 3.0000 1.00 2847 122 0.2370 0.3045 REMARK 3 8 3.0000 - 2.8700 1.00 2864 127 0.2345 0.2945 REMARK 3 9 2.8700 - 2.7600 1.00 2830 137 0.2414 0.3403 REMARK 3 10 2.7600 - 2.6600 1.00 2855 122 0.2649 0.3910 REMARK 3 11 2.6600 - 2.5800 1.00 2871 120 0.2774 0.3392 REMARK 3 12 2.5800 - 2.5000 0.97 2766 136 0.2769 0.3510 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.382 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 8014 REMARK 3 ANGLE : 1.179 10925 REMARK 3 CHIRALITY : 0.056 1199 REMARK 3 PLANARITY : 0.009 1313 REMARK 3 DIHEDRAL : 14.247 1199 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 34.9265 10.3462 27.8228 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.3549 REMARK 3 T33: 0.3689 T12: 0.0473 REMARK 3 T13: -0.0053 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.9283 L22: 0.2748 REMARK 3 L33: 0.3294 L12: 0.4047 REMARK 3 L13: -0.0622 L23: -0.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.3203 S13: 0.0118 REMARK 3 S21: -0.0202 S22: 0.0814 S23: -0.0118 REMARK 3 S31: -0.0455 S32: -0.0220 S33: -0.0457 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 2 through 181 or REMARK 3 resid 195 through 299 or resid 301 REMARK 3 through 486)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 2 through 181 or REMARK 3 resid 195 through 486)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UP1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 10-JUL-25. REMARK 100 THE DEPOSITION ID IS D_1300058936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35981 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE, 0.1 M BICINE PH REMARK 280 8.5, 20% W/V POLYETHYLENE GLYCOL MONOMETHYL ETHER 5,000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.12100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 182 REMARK 465 GLY A 183 REMARK 465 ILE A 184 REMARK 465 LYS A 185 REMARK 465 PRO A 186 REMARK 465 GLY A 187 REMARK 465 GLU A 188 REMARK 465 GLU A 189 REMARK 465 ARG A 190 REMARK 465 VAL A 191 REMARK 465 PRO A 192 REMARK 465 ASP A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 SER A 296 REMARK 465 GLN A 297 REMARK 465 SER A 298 REMARK 465 ILE A 487 REMARK 465 VAL A 488 REMARK 465 THR A 489 REMARK 465 LYS A 490 REMARK 465 MET B 1 REMARK 465 PRO B 186 REMARK 465 GLY B 187 REMARK 465 GLU B 188 REMARK 465 GLU B 189 REMARK 465 ARG B 190 REMARK 465 VAL B 191 REMARK 465 PRO B 192 REMARK 465 ALA B 193 REMARK 465 GLU B 194 REMARK 465 ASP B 293 REMARK 465 GLY B 294 REMARK 465 SER B 295 REMARK 465 SER B 296 REMARK 465 GLN B 297 REMARK 465 SER B 298 REMARK 465 GLY B 299 REMARK 465 ILE B 487 REMARK 465 VAL B 488 REMARK 465 THR B 489 REMARK 465 LYS B 490 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 423 OH TYR B 486 2.06 REMARK 500 OE2 GLU A 243 OH TYR A 282 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP B 101 NZ LYS B 350 2556 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 248 CD GLU B 248 OE1 0.069 REMARK 500 DT D 8 O3' DT D 8 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 53 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 GLU A 112 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 LYS A 340 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 LYS B 350 CD - CE - NZ ANGL. DEV. = -16.6 DEGREES REMARK 500 DC C 1 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 10 55.79 -95.77 REMARK 500 ARG A 45 128.06 -38.90 REMARK 500 GLU A 194 -18.35 77.64 REMARK 500 ASP A 216 111.36 -160.11 REMARK 500 ALA A 239 39.78 -94.68 REMARK 500 GLN A 304 -3.80 66.71 REMARK 500 ASP A 423 -122.55 57.83 REMARK 500 ASP A 444 50.15 -90.28 REMARK 500 THR B 10 54.63 -93.73 REMARK 500 ASP B 216 111.91 -160.66 REMARK 500 ALA B 239 47.75 -89.21 REMARK 500 GLN B 304 -4.93 68.50 REMARK 500 ASP B 423 -118.61 56.59 REMARK 500 ASP B 444 53.11 -92.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 340 ASN A 341 139.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 45 0.08 SIDE CHAIN REMARK 500 GLU B 248 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 9UP1 A 1 490 UNP A0A5C0C9F4_9VIRU DBREF2 9UP1 A A0A5C0C9F4 1 490 DBREF1 9UP1 B 1 490 UNP A0A5C0C9F4_9VIRU DBREF2 9UP1 B A0A5C0C9F4 1 490 DBREF 9UP1 C 1 13 PDB 9UP1 9UP1 1 13 DBREF 9UP1 D 6 13 PDB 9UP1 9UP1 6 13 SEQRES 1 A 490 MET ALA PRO LEU PRO LYS SER LEU LEU THR PHE SER ASP SEQRES 2 A 490 ALA SER GLY LEU ASP SER TRP PHE LYS ASP PHE GLU ALA SEQRES 3 A 490 LYS ASN ILE MET SER GLU GLU TYR THR ASN SER LYS SER SEQRES 4 A 490 PHE CYS PHE ASP LEU ARG MET ALA THR GLN TRP LYS LYS SEQRES 5 A 490 LEU PRO THR ARG ALA GLU ASN ASP ALA MET ILE ALA GLN SEQRES 6 A 490 LEU VAL HIS GLU ARG LEU LYS THR CYS ALA PRO ILE LYS SEQRES 7 A 490 GLU PHE ALA TRP THR ALA CYS ASP GLY MET VAL GLU ARG SEQRES 8 A 490 GLY LEU ASN TRP PHE ASP ARG ASN LYS ASP SER GLU THR SEQRES 9 A 490 MET THR TRP ALA ALA ASN TYR GLU ALA LEU LYS GLY ARG SEQRES 10 A 490 LEU PRO THR THR ALA GLU VAL ASN GLN TYR GLN LYS ALA SEQRES 11 A 490 ALA LEU GLN TRP ARG THR ASP THR ASN TYR ALA ILE ASN SEQRES 12 A 490 LYS TYR THR ALA ALA ILE SER ASP SER VAL VAL LYS ILE SEQRES 13 A 490 TYR GLN VAL ASN ASN LYS ILE VAL THR ASP ILE ARG ASP SEQRES 14 A 490 LEU LEU SER ASP MET VAL ALA ARG ARG ASN LYS ALA LEU SEQRES 15 A 490 GLY ILE LYS PRO GLY GLU GLU ARG VAL PRO ALA GLU HIS SEQRES 16 A 490 VAL ASP SER PHE SER ASN TRP LEU LYS GLN GLY ASP TRP SEQRES 17 A 490 SER ALA PRO CYS PRO TRP GLY ASP TRP GLU LYS LYS ASN SEQRES 18 A 490 LYS LYS GLY ASN SER LEU ILE VAL THR ALA CYS ALA GLY SEQRES 19 A 490 VAL ILE ASN ARG ALA LEU PHE LYS GLU GLU GLU LEU LYS SEQRES 20 A 490 GLU ARG LEU LYS SER LEU ALA GLY ASP ALA SER LEU ALA SEQRES 21 A 490 SER LYS THR GLU GLY PHE ASP PRO LYS LYS CYS GLU ASP SEQRES 22 A 490 THR ALA LYS ILE LEU LEU ASP LEU TYR GLY LYS ALA LYS SEQRES 23 A 490 ALA PHE ILE SER GLY GLY ASP GLY SER SER GLN SER GLY SEQRES 24 A 490 GLY PHE VAL GLN GLN GLY SER ALA LEU ASP THR VAL PHE SEQRES 25 A 490 SER SER TYR PHE TRP ALA TRP LYS CYS GLY VAL LYS LYS SEQRES 26 A 490 ASP VAL PHE PRO ALA LEU SER SER MET LEU TYR ALA LEU SEQRES 27 A 490 GLY LYS ASN PRO THR GLY LYS THR LYS ILE ILE LYS VAL SEQRES 28 A 490 LEU LYS ALA SER PRO TYR THR TRP ALA HIS LYS MET THR SEQRES 29 A 490 GLU MET PHE SER THR LEU SER THR ASP PRO ILE HIS MET SEQRES 30 A 490 HIS PRO GLY VAL LEU THR ALA GLY ARG LEU THR THR GLU SEQRES 31 A 490 MET VAL ALA SER PHE GLY ALA PHE PRO VAL SER ASP PRO SEQRES 32 A 490 SER LYS ALA ALA ASP GLY ALA SER SER PRO ARG PHE LEU SEQRES 33 A 490 LEU ASN LEU LYS SER SER ASP MET ASN PRO ALA ALA THR SEQRES 34 A 490 THR VAL SER ARG MET PHE TYR GLU TYR ARG GLN GLY TYR SEQRES 35 A 490 PRO ASP TRP ARG ASP GLU GLU ILE VAL PRO VAL GLU HIS SEQRES 36 A 490 LEU LEU HIS GLN THR PHE LEU SER LYS LEU GLY PRO TYR SEQRES 37 A 490 VAL ASN VAL SER GLN VAL GLN GLY ASN ALA LEU ALA VAL SEQRES 38 A 490 LYS ILE THR GLU TYR ILE VAL THR LYS SEQRES 1 B 490 MET ALA PRO LEU PRO LYS SER LEU LEU THR PHE SER ASP SEQRES 2 B 490 ALA SER GLY LEU ASP SER TRP PHE LYS ASP PHE GLU ALA SEQRES 3 B 490 LYS ASN ILE MET SER GLU GLU TYR THR ASN SER LYS SER SEQRES 4 B 490 PHE CYS PHE ASP LEU ARG MET ALA THR GLN TRP LYS LYS SEQRES 5 B 490 LEU PRO THR ARG ALA GLU ASN ASP ALA MET ILE ALA GLN SEQRES 6 B 490 LEU VAL HIS GLU ARG LEU LYS THR CYS ALA PRO ILE LYS SEQRES 7 B 490 GLU PHE ALA TRP THR ALA CYS ASP GLY MET VAL GLU ARG SEQRES 8 B 490 GLY LEU ASN TRP PHE ASP ARG ASN LYS ASP SER GLU THR SEQRES 9 B 490 MET THR TRP ALA ALA ASN TYR GLU ALA LEU LYS GLY ARG SEQRES 10 B 490 LEU PRO THR THR ALA GLU VAL ASN GLN TYR GLN LYS ALA SEQRES 11 B 490 ALA LEU GLN TRP ARG THR ASP THR ASN TYR ALA ILE ASN SEQRES 12 B 490 LYS TYR THR ALA ALA ILE SER ASP SER VAL VAL LYS ILE SEQRES 13 B 490 TYR GLN VAL ASN ASN LYS ILE VAL THR ASP ILE ARG ASP SEQRES 14 B 490 LEU LEU SER ASP MET VAL ALA ARG ARG ASN LYS ALA LEU SEQRES 15 B 490 GLY ILE LYS PRO GLY GLU GLU ARG VAL PRO ALA GLU HIS SEQRES 16 B 490 VAL ASP SER PHE SER ASN TRP LEU LYS GLN GLY ASP TRP SEQRES 17 B 490 SER ALA PRO CYS PRO TRP GLY ASP TRP GLU LYS LYS ASN SEQRES 18 B 490 LYS LYS GLY ASN SER LEU ILE VAL THR ALA CYS ALA GLY SEQRES 19 B 490 VAL ILE ASN ARG ALA LEU PHE LYS GLU GLU GLU LEU LYS SEQRES 20 B 490 GLU ARG LEU LYS SER LEU ALA GLY ASP ALA SER LEU ALA SEQRES 21 B 490 SER LYS THR GLU GLY PHE ASP PRO LYS LYS CYS GLU ASP SEQRES 22 B 490 THR ALA LYS ILE LEU LEU ASP LEU TYR GLY LYS ALA LYS SEQRES 23 B 490 ALA PHE ILE SER GLY GLY ASP GLY SER SER GLN SER GLY SEQRES 24 B 490 GLY PHE VAL GLN GLN GLY SER ALA LEU ASP THR VAL PHE SEQRES 25 B 490 SER SER TYR PHE TRP ALA TRP LYS CYS GLY VAL LYS LYS SEQRES 26 B 490 ASP VAL PHE PRO ALA LEU SER SER MET LEU TYR ALA LEU SEQRES 27 B 490 GLY LYS ASN PRO THR GLY LYS THR LYS ILE ILE LYS VAL SEQRES 28 B 490 LEU LYS ALA SER PRO TYR THR TRP ALA HIS LYS MET THR SEQRES 29 B 490 GLU MET PHE SER THR LEU SER THR ASP PRO ILE HIS MET SEQRES 30 B 490 HIS PRO GLY VAL LEU THR ALA GLY ARG LEU THR THR GLU SEQRES 31 B 490 MET VAL ALA SER PHE GLY ALA PHE PRO VAL SER ASP PRO SEQRES 32 B 490 SER LYS ALA ALA ASP GLY ALA SER SER PRO ARG PHE LEU SEQRES 33 B 490 LEU ASN LEU LYS SER SER ASP MET ASN PRO ALA ALA THR SEQRES 34 B 490 THR VAL SER ARG MET PHE TYR GLU TYR ARG GLN GLY TYR SEQRES 35 B 490 PRO ASP TRP ARG ASP GLU GLU ILE VAL PRO VAL GLU HIS SEQRES 36 B 490 LEU LEU HIS GLN THR PHE LEU SER LYS LEU GLY PRO TYR SEQRES 37 B 490 VAL ASN VAL SER GLN VAL GLN GLY ASN ALA LEU ALA VAL SEQRES 38 B 490 LYS ILE THR GLU TYR ILE VAL THR LYS SEQRES 1 C 13 DC DC DT DC DC DC DG DC DA DC DT DT DC SEQRES 1 D 8 DC DG DT DA DA DT DC DC FORMUL 5 HOH *110(H2 O) HELIX 1 AA1 ASP A 13 ASN A 28 1 16 HELIX 2 AA2 THR A 55 LYS A 72 1 18 HELIX 3 AA3 PRO A 76 ALA A 84 1 9 HELIX 4 AA4 CYS A 85 LYS A 100 1 16 HELIX 5 AA5 SER A 102 THR A 104 5 3 HELIX 6 AA6 MET A 105 ASN A 110 1 6 HELIX 7 AA7 ASN A 110 LYS A 115 1 6 HELIX 8 AA8 THR A 120 ASN A 139 1 20 HELIX 9 AA9 ASN A 143 ALA A 147 5 5 HELIX 10 AB1 ILE A 163 ALA A 181 1 19 HELIX 11 AB2 GLU A 194 GLN A 205 1 12 HELIX 12 AB3 SER A 226 ARG A 238 1 13 HELIX 13 AB4 LYS A 242 SER A 261 1 20 HELIX 14 AB5 ASP A 267 GLY A 291 1 25 HELIX 15 AB6 ASP A 309 CYS A 321 1 13 HELIX 16 AB7 VAL A 327 LYS A 340 1 14 HELIX 17 AB8 GLY A 344 SER A 355 1 12 HELIX 18 AB9 TYR A 357 MET A 366 1 10 HELIX 19 AC1 ASP A 373 MET A 377 5 5 HELIX 20 AC2 THR A 383 GLY A 396 1 14 HELIX 21 AC3 ASP A 402 GLY A 409 5 8 HELIX 22 AC4 SER A 412 LEU A 419 5 8 HELIX 23 AC5 ASN A 425 TYR A 442 1 18 HELIX 24 AC6 ASP A 444 GLU A 448 5 5 HELIX 25 AC7 VAL A 451 PHE A 461 1 11 HELIX 26 AC8 ASN A 477 VAL A 481 5 5 HELIX 27 AC9 ASP B 13 ASN B 28 1 16 HELIX 28 AD1 THR B 55 LYS B 72 1 18 HELIX 29 AD2 PRO B 76 ALA B 84 1 9 HELIX 30 AD3 CYS B 85 LYS B 100 1 16 HELIX 31 AD4 SER B 102 THR B 104 5 3 HELIX 32 AD5 MET B 105 ASN B 110 1 6 HELIX 33 AD6 ASN B 110 LYS B 115 1 6 HELIX 34 AD7 THR B 120 ASN B 139 1 20 HELIX 35 AD8 ASN B 143 ALA B 147 5 5 HELIX 36 AD9 ILE B 163 GLY B 183 1 21 HELIX 37 AE1 VAL B 196 GLN B 205 1 10 HELIX 38 AE2 SER B 226 ARG B 238 1 13 HELIX 39 AE3 LYS B 242 LYS B 262 1 21 HELIX 40 AE4 ASP B 267 SER B 290 1 24 HELIX 41 AE5 ASP B 309 GLY B 322 1 14 HELIX 42 AE6 VAL B 327 LYS B 340 1 14 HELIX 43 AE7 GLY B 344 SER B 355 1 12 HELIX 44 AE8 TYR B 357 PHE B 367 1 11 HELIX 45 AE9 ASP B 373 MET B 377 5 5 HELIX 46 AF1 THR B 383 GLY B 396 1 14 HELIX 47 AF2 ASP B 402 GLY B 409 5 8 HELIX 48 AF3 SER B 412 LEU B 419 5 8 HELIX 49 AF4 ASN B 425 TYR B 442 1 18 HELIX 50 AF5 ASP B 444 GLU B 448 5 5 HELIX 51 AF6 VAL B 451 PHE B 461 1 11 HELIX 52 AF7 ASN B 477 VAL B 481 5 5 SHEET 1 AA1 2 ILE A 156 ASN A 160 0 SHEET 2 AA1 2 LYS A 482 TYR A 486 1 O LYS A 482 N TYR A 157 SHEET 1 AA2 2 ILE B 156 VAL B 159 0 SHEET 2 AA2 2 LYS B 482 GLU B 485 1 O THR B 484 N VAL B 159 CRYST1 90.769 60.242 96.018 90.00 93.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011017 0.000000 0.000579 0.00000 SCALE2 0.000000 0.016600 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010429 0.00000 MTRIX1 1 -0.026165 -0.015818 0.999532 -1.82079 1 MTRIX2 1 -0.077363 0.996908 0.013751 -13.46706 1 MTRIX3 1 -0.996660 -0.076967 -0.027308 91.19197 1 MASTER 421 0 0 52 4 0 0 9 7903 4 0 78 END