data_9URP # _entry.id 9URP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9URP pdb_00009urp 10.2210/pdb9urp/pdb WWPDB D_1300058993 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-11-04 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9URP _pdbx_database_status.recvd_initial_deposition_date 2025-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 5 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Luo, Y.' 1 ? 'Chen, X.' 2 ? 'Ren, Y.' 3 ? 'Huang, L.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of adenosine and ATP-binding DNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Luo, Y.' 1 ? primary 'Chen, X.' 2 ? primary 'Ren, Y.' 3 ? primary 'Huang, L.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (25-MER)' 7987.166 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*GP*TP*TP*TP*CP*GP*AP*AP*GP*GP*TP*(C38)P*GP*TP*GP*A)-3') ; 5737.535 1 ? ? ? ? 3 non-polymer syn ADENOSINE 267.241 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 5 ? ? ? ? 5 non-polymer nat 'SODIUM ION' 22.990 1 ? ? ? ? 6 water nat water 18.015 142 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no ;(DT)(DC)(DA)(DC)(DG)(DA)(DC)(DG)(DT)(DT)(DT)(DG)(DC)(DG)(DA)(DT)(DG)(DA)(DG)(DA) (DA)(DA)(DC)(DT)(DC)(DT) ; TCACGACGTTTGCGATGAGAAACTCT A ? 2 polydeoxyribonucleotide no yes '(DG)(DA)(DG)(DT)(DT)(DT)(DC)(DG)(DA)(DA)(DG)(DG)(DT)(C38)(DG)(DT)(DG)(DA)' GAGTTTCGAAGGTCGTGA B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 ADENOSINE ADN 4 'CALCIUM ION' CA 5 'SODIUM ION' NA 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DC n 1 3 DA n 1 4 DC n 1 5 DG n 1 6 DA n 1 7 DC n 1 8 DG n 1 9 DT n 1 10 DT n 1 11 DT n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DA n 1 16 DT n 1 17 DG n 1 18 DA n 1 19 DG n 1 20 DA n 1 21 DA n 1 22 DA n 1 23 DC n 1 24 DT n 1 25 DC n 1 26 DT n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DT n 2 5 DT n 2 6 DT n 2 7 DC n 2 8 DG n 2 9 DA n 2 10 DA n 2 11 DG n 2 12 DG n 2 13 DT n 2 14 C38 n 2 15 DG n 2 16 DT n 2 17 DG n 2 18 DA n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 26 'synthetic construct' ? 32630 ? 2 1 sample 1 18 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADN non-polymer . ADENOSINE ? 'C10 H13 N5 O4' 267.241 C38 'DNA linking' n "5-IODO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 I N3 O7 P' 433.094 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 0 0 DT DT A . n A 1 2 DC 2 1 1 DC DC A . n A 1 3 DA 3 2 2 DA DA A . n A 1 4 DC 4 3 3 DC DC A . n A 1 5 DG 5 4 4 DG DG A . n A 1 6 DA 6 5 5 DA DA A . n A 1 7 DC 7 6 6 DC DC A . n A 1 8 DG 8 7 7 DG DG A . n A 1 9 DT 9 8 8 DT DT A . n A 1 10 DT 10 9 9 DT DT A . n A 1 11 DT 11 10 10 DT DT A . n A 1 12 DG 12 11 11 DG DG A . n A 1 13 DC 13 12 12 DC DC A . n A 1 14 DG 14 13 13 DG DG A . n A 1 15 DA 15 14 14 DA DA A . n A 1 16 DT 16 15 15 DT DT A . n A 1 17 DG 17 16 16 DG DG A . n A 1 18 DA 18 17 17 DA DA A . n A 1 19 DG 19 18 18 DG DG A . n A 1 20 DA 20 19 19 DA DA A . n A 1 21 DA 21 20 20 DA DA A . n A 1 22 DA 22 21 21 DA DA A . n A 1 23 DC 23 22 22 DC DC A . n A 1 24 DT 24 23 23 DT DT A . n A 1 25 DC 25 24 24 DC DC A . n A 1 26 DT 26 25 ? ? ? A . n B 2 1 DG 1 23 23 DG DG B . n B 2 2 DA 2 24 24 DA DA B . n B 2 3 DG 3 25 25 DG DG B . n B 2 4 DT 4 26 26 DT DT B . n B 2 5 DT 5 27 27 DT DT B . n B 2 6 DT 6 28 28 DT DT B . n B 2 7 DC 7 29 29 DC DC B . n B 2 8 DG 8 30 30 DG DG B . n B 2 9 DA 9 31 31 DA DA B . n B 2 10 DA 10 32 32 DA DA B . n B 2 11 DG 11 33 33 DG DG B . n B 2 12 DG 12 34 34 DG DG B . n B 2 13 DT 13 35 35 DT DT B . n B 2 14 C38 14 36 36 C38 C38 B . n B 2 15 DG 15 37 37 DG DG B . n B 2 16 DT 16 38 38 DT DT B . n B 2 17 DG 17 39 39 DG DG B . n B 2 18 DA 18 40 40 DA DA B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ADN ? ? ADN ? ? 'SUBJECT OF INVESTIGATION' ? 2 C38 ? ? C38 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADN 1 101 101 ADN ADN A . D 4 CA 1 102 1 CA CA A . E 4 CA 1 103 2 CA CA A . F 4 CA 1 104 4 CA CA A . G 4 CA 1 105 5 CA CA A . H 5 NA 1 106 1 NA NA A . I 4 CA 1 101 8 CA CA B . J 6 HOH 1 201 131 HOH HOH A . J 6 HOH 2 202 16 HOH HOH A . J 6 HOH 3 203 139 HOH HOH A . J 6 HOH 4 204 80 HOH HOH A . J 6 HOH 5 205 3 HOH HOH A . J 6 HOH 6 206 48 HOH HOH A . J 6 HOH 7 207 128 HOH HOH A . J 6 HOH 8 208 101 HOH HOH A . J 6 HOH 9 209 7 HOH HOH A . J 6 HOH 10 210 76 HOH HOH A . J 6 HOH 11 211 100 HOH HOH A . J 6 HOH 12 212 55 HOH HOH A . J 6 HOH 13 213 78 HOH HOH A . J 6 HOH 14 214 98 HOH HOH A . J 6 HOH 15 215 45 HOH HOH A . J 6 HOH 16 216 46 HOH HOH A . J 6 HOH 17 217 74 HOH HOH A . J 6 HOH 18 218 68 HOH HOH A . J 6 HOH 19 219 119 HOH HOH A . J 6 HOH 20 220 47 HOH HOH A . J 6 HOH 21 221 23 HOH HOH A . J 6 HOH 22 222 34 HOH HOH A . J 6 HOH 23 223 57 HOH HOH A . J 6 HOH 24 224 26 HOH HOH A . J 6 HOH 25 225 29 HOH HOH A . J 6 HOH 26 226 75 HOH HOH A . J 6 HOH 27 227 31 HOH HOH A . J 6 HOH 28 228 2 HOH HOH A . J 6 HOH 29 229 33 HOH HOH A . J 6 HOH 30 230 71 HOH HOH A . J 6 HOH 31 231 115 HOH HOH A . J 6 HOH 32 232 117 HOH HOH A . J 6 HOH 33 233 125 HOH HOH A . J 6 HOH 34 234 85 HOH HOH A . J 6 HOH 35 235 105 HOH HOH A . J 6 HOH 36 236 30 HOH HOH A . J 6 HOH 37 237 37 HOH HOH A . J 6 HOH 38 238 79 HOH HOH A . J 6 HOH 39 239 15 HOH HOH A . J 6 HOH 40 240 127 HOH HOH A . J 6 HOH 41 241 20 HOH HOH A . J 6 HOH 42 242 114 HOH HOH A . J 6 HOH 43 243 9 HOH HOH A . J 6 HOH 44 244 5 HOH HOH A . J 6 HOH 45 245 89 HOH HOH A . J 6 HOH 46 246 39 HOH HOH A . J 6 HOH 47 247 112 HOH HOH A . J 6 HOH 48 248 61 HOH HOH A . J 6 HOH 49 249 90 HOH HOH A . J 6 HOH 50 250 12 HOH HOH A . J 6 HOH 51 251 14 HOH HOH A . J 6 HOH 52 252 113 HOH HOH A . J 6 HOH 53 253 54 HOH HOH A . J 6 HOH 54 254 59 HOH HOH A . J 6 HOH 55 255 124 HOH HOH A . J 6 HOH 56 256 106 HOH HOH A . J 6 HOH 57 257 13 HOH HOH A . J 6 HOH 58 258 27 HOH HOH A . J 6 HOH 59 259 60 HOH HOH A . J 6 HOH 60 260 120 HOH HOH A . J 6 HOH 61 261 52 HOH HOH A . J 6 HOH 62 262 51 HOH HOH A . J 6 HOH 63 263 53 HOH HOH A . J 6 HOH 64 264 94 HOH HOH A . J 6 HOH 65 265 129 HOH HOH A . J 6 HOH 66 266 62 HOH HOH A . J 6 HOH 67 267 104 HOH HOH A . J 6 HOH 68 268 72 HOH HOH A . J 6 HOH 69 269 28 HOH HOH A . J 6 HOH 70 270 110 HOH HOH A . J 6 HOH 71 271 88 HOH HOH A . J 6 HOH 72 272 10 HOH HOH A . J 6 HOH 73 273 25 HOH HOH A . J 6 HOH 74 274 142 HOH HOH A . J 6 HOH 75 275 77 HOH HOH A . J 6 HOH 76 276 11 HOH HOH A . J 6 HOH 77 277 137 HOH HOH A . J 6 HOH 78 278 40 HOH HOH A . J 6 HOH 79 279 1 HOH HOH A . J 6 HOH 80 280 95 HOH HOH A . J 6 HOH 81 281 43 HOH HOH A . J 6 HOH 82 282 22 HOH HOH A . J 6 HOH 83 283 4 HOH HOH A . J 6 HOH 84 284 118 HOH HOH A . J 6 HOH 85 285 107 HOH HOH A . J 6 HOH 86 286 49 HOH HOH A . J 6 HOH 87 287 111 HOH HOH A . J 6 HOH 88 288 58 HOH HOH A . J 6 HOH 89 289 66 HOH HOH A . J 6 HOH 90 290 126 HOH HOH A . J 6 HOH 91 291 36 HOH HOH A . J 6 HOH 92 292 116 HOH HOH A . J 6 HOH 93 293 99 HOH HOH A . J 6 HOH 94 294 122 HOH HOH A . J 6 HOH 95 295 84 HOH HOH A . K 6 HOH 1 201 134 HOH HOH B . K 6 HOH 2 202 82 HOH HOH B . K 6 HOH 3 203 69 HOH HOH B . K 6 HOH 4 204 73 HOH HOH B . K 6 HOH 5 205 136 HOH HOH B . K 6 HOH 6 206 65 HOH HOH B . K 6 HOH 7 207 81 HOH HOH B . K 6 HOH 8 208 130 HOH HOH B . K 6 HOH 9 209 8 HOH HOH B . K 6 HOH 10 210 32 HOH HOH B . K 6 HOH 11 211 44 HOH HOH B . K 6 HOH 12 212 108 HOH HOH B . K 6 HOH 13 213 21 HOH HOH B . K 6 HOH 14 214 121 HOH HOH B . K 6 HOH 15 215 24 HOH HOH B . K 6 HOH 16 216 41 HOH HOH B . K 6 HOH 17 217 50 HOH HOH B . K 6 HOH 18 218 138 HOH HOH B . K 6 HOH 19 219 17 HOH HOH B . K 6 HOH 20 220 93 HOH HOH B . K 6 HOH 21 221 42 HOH HOH B . K 6 HOH 22 222 38 HOH HOH B . K 6 HOH 23 223 86 HOH HOH B . K 6 HOH 24 224 63 HOH HOH B . K 6 HOH 25 225 123 HOH HOH B . K 6 HOH 26 226 35 HOH HOH B . K 6 HOH 27 227 87 HOH HOH B . K 6 HOH 28 228 56 HOH HOH B . K 6 HOH 29 229 64 HOH HOH B . K 6 HOH 30 230 102 HOH HOH B . K 6 HOH 31 231 6 HOH HOH B . K 6 HOH 32 232 19 HOH HOH B . K 6 HOH 33 233 109 HOH HOH B . K 6 HOH 34 234 135 HOH HOH B . K 6 HOH 35 235 141 HOH HOH B . K 6 HOH 36 236 91 HOH HOH B . K 6 HOH 37 237 18 HOH HOH B . K 6 HOH 38 238 132 HOH HOH B . K 6 HOH 39 239 83 HOH HOH B . K 6 HOH 40 240 133 HOH HOH B . K 6 HOH 41 241 96 HOH HOH B . K 6 HOH 42 242 70 HOH HOH B . K 6 HOH 43 243 97 HOH HOH B . K 6 HOH 44 244 103 HOH HOH B . K 6 HOH 45 245 92 HOH HOH B . K 6 HOH 46 246 67 HOH HOH B . K 6 HOH 47 247 140 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 ? 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9URP _cell.details ? _cell.formula_units_Z ? _cell.length_a 27.387 _cell.length_a_esd ? _cell.length_b 37.507 _cell.length_b_esd ? _cell.length_c 121.206 _cell.length_c_esd ? _cell.volume 124503.313 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9URP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9URP _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.76 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Calcium chloride dihydrate, 0.05 M HEPES sodium pH 8.0, 32% v/v Polyethylene glycol 400, 0.002 M Spermine ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-12-01 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54975 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL18U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54975 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL18U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 22.66 _reflns.entry_id 9URP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.77 _reflns.d_resolution_low 35.83 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12590 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 20.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 27.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.023 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.86 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1513 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.434 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.748 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.960 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 42.86 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9URP _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.77 _refine.ls_d_res_low 35.83 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12471 _refine.ls_number_reflns_R_free 1247 _refine.ls_number_reflns_R_work 11224 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.30 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2061 _refine.ls_R_factor_R_free 0.2276 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2036 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.9024 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2477 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 35.83 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 1051 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 884 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0069 ? 1013 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 0.8876 ? 1561 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0410 ? 173 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0077 ? 44 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 32.4008 ? 418 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.77 1.84 . . 111 997 77.92 . . . . 0.3493 . . . . . . . . . . . . . . . 0.3768 'X-RAY DIFFRACTION' 1.84 1.92 . . 129 1164 93.29 . . . . 0.2623 . . . . . . . . . . . . . . . 0.2880 'X-RAY DIFFRACTION' 1.92 2.02 . . 140 1257 98.94 . . . . 0.2461 . . . . . . . . . . . . . . . 0.2874 'X-RAY DIFFRACTION' 2.02 2.15 . . 140 1263 98.53 . . . . 0.2378 . . . . . . . . . . . . . . . 0.2710 'X-RAY DIFFRACTION' 2.15 2.31 . . 141 1261 98.94 . . . . 0.2386 . . . . . . . . . . . . . . . 0.2743 'X-RAY DIFFRACTION' 2.31 2.55 . . 140 1272 99.58 . . . . 0.2305 . . . . . . . . . . . . . . . 0.2537 'X-RAY DIFFRACTION' 2.55 2.91 . . 145 1301 99.93 . . . . 0.2292 . . . . . . . . . . . . . . . 0.2414 'X-RAY DIFFRACTION' 2.91 3.67 . . 143 1297 99.17 . . . . 0.1718 . . . . . . . . . . . . . . . 0.2002 'X-RAY DIFFRACTION' 3.67 35.83 . . 158 1412 99.94 . . . . 0.1681 . . . . . . . . . . . . . . . 0.1868 # _struct.entry_id 9URP _struct.title 'Crystal structure of the new adenosine and ATP-binding 1301 DNA aptamer(two strands) with ADO' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9URP _struct_keywords.text 'Adenosine/ATP DNA aptamer, ADO, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 4 ? J N N 6 ? K N N 6 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9URP 9URP ? 1 ? 1 2 PDB 9URP 9URP ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9URP A 1 ? 26 ? 9URP 0 ? 25 ? 0 25 2 2 9URP B 1 ? 18 ? 9URP 23 ? 40 ? 23 40 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3980 ? 1 MORE -39 ? 1 'SSA (A^2)' 7320 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DT 13 "O3'" ? ? ? 1_555 B C38 14 P ? ? B DT 35 B C38 36 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale2 covale one ? B C38 14 "O3'" ? ? ? 1_555 B DG 15 P ? ? B C38 36 B DG 37 1_555 ? ? ? ? ? ? ? 1.607 ? ? metalc1 metalc ? ? A DT 9 O4 ? ? ? 1_555 E CA . CA ? ? A DT 8 A CA 103 4_556 ? ? ? ? ? ? ? 2.561 ? ? metalc2 metalc ? ? A DT 16 OP1 ? ? ? 1_555 F CA . CA ? ? A DT 15 A CA 104 1_555 ? ? ? ? ? ? ? 2.603 ? ? metalc3 metalc ? ? A DG 17 OP1 ? ? ? 1_555 D CA . CA ? ? A DG 16 A CA 102 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc4 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 228 4_556 ? ? ? ? ? ? ? 2.464 ? ? metalc5 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 233 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc6 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 278 1_555 ? ? ? ? ? ? ? 2.389 ? ? metalc7 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 279 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc8 metalc ? ? D CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 102 B HOH 219 4_556 ? ? ? ? ? ? ? 2.380 ? ? metalc9 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 213 4_456 ? ? ? ? ? ? ? 2.452 ? ? metalc10 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 232 4_456 ? ? ? ? ? ? ? 2.461 ? ? metalc11 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 244 4_456 ? ? ? ? ? ? ? 2.513 ? ? metalc12 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 271 4_456 ? ? ? ? ? ? ? 2.473 ? ? metalc13 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 272 4_456 ? ? ? ? ? ? ? 2.406 ? ? metalc14 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 275 4_456 ? ? ? ? ? ? ? 2.499 ? ? metalc15 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 238 4_556 ? ? ? ? ? ? ? 2.624 ? ? metalc16 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 263 1_555 ? ? ? ? ? ? ? 2.846 ? ? metalc17 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 265 4_556 ? ? ? ? ? ? ? 2.446 ? ? metalc18 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 B HOH 216 4_566 ? ? ? ? ? ? ? 2.225 ? ? metalc19 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 B HOH 221 1_655 ? ? ? ? ? ? ? 2.169 ? ? metalc20 metalc ? ? F CA . CA ? ? ? 1_555 K HOH . O ? ? A CA 104 B HOH 242 4_566 ? ? ? ? ? ? ? 2.614 ? ? metalc21 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 210 1_555 ? ? ? ? ? ? ? 2.632 ? ? metalc22 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 226 1_555 ? ? ? ? ? ? ? 2.449 ? ? metalc23 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 231 4_556 ? ? ? ? ? ? ? 2.427 ? ? metalc24 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 240 1_555 ? ? ? ? ? ? ? 2.701 ? ? metalc25 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 242 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc26 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 255 1_555 ? ? ? ? ? ? ? 2.429 ? ? metalc27 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 283 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc28 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 292 1_555 ? ? ? ? ? ? ? 2.838 ? ? metalc29 metalc ? ? H NA . NA ? ? ? 1_555 K HOH . O ? ? A NA 106 B HOH 240 1_555 ? ? ? ? ? ? ? 2.800 ? ? metalc30 metalc ? ? J HOH . O ? ? ? 1_555 I CA . CA ? ? A HOH 224 B CA 101 1_555 ? ? ? ? ? ? ? 2.529 ? ? metalc31 metalc ? ? J HOH . O ? ? ? 4_456 I CA . CA ? ? A HOH 267 B CA 101 1_555 ? ? ? ? ? ? ? 2.760 ? ? metalc32 metalc ? ? J HOH . O ? ? ? 1_555 I CA . CA ? ? A HOH 281 B CA 101 1_555 ? ? ? ? ? ? ? 2.326 ? ? metalc33 metalc ? ? J HOH . O ? ? ? 4_456 I CA . CA ? ? A HOH 289 B CA 101 1_555 ? ? ? ? ? ? ? 2.000 ? ? metalc34 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 209 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc35 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 239 1_555 ? ? ? ? ? ? ? 2.528 ? ? metalc36 metalc ? ? I CA . CA ? ? ? 1_555 K HOH . O ? ? B CA 101 B HOH 246 1_555 ? ? ? ? ? ? ? 2.400 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 18 N1 ? ? A DT 0 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 18 N6 ? ? A DT 0 B DA 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 17 N1 ? ? A DC 1 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 17 O6 ? ? A DC 1 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 17 N2 ? ? A DC 1 B DG 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 16 N3 ? ? A DA 2 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 16 O4 ? ? A DA 2 B DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 15 N1 ? ? A DC 3 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 15 O6 ? ? A DC 3 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 15 N2 ? ? A DC 3 B DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B C38 14 N3 ? ? A DG 4 B C38 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B C38 14 O2 ? ? A DG 4 B C38 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B C38 14 N4 ? ? A DG 4 B C38 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 13 N3 ? ? A DA 5 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 13 O4 ? ? A DA 5 B DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 6 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 6 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 6 B DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 12 N7 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 12 O6 ? ? A DG 7 A DG 11 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog21 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 9 N1 ? ? A DT 9 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog22 hydrog ? ? A DT 10 O2 ? ? ? 1_555 B DA 9 N6 ? ? A DT 9 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog23 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 10 N1 ? ? A DT 10 B DA 32 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog24 hydrog ? ? A DT 11 O2 ? ? ? 1_555 B DA 10 N6 ? ? A DT 10 B DA 32 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DG 11 N3 ? ? A DG 11 B DG 33 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? A DG 12 N3 ? ? ? 1_555 B DG 11 N2 ? ? A DG 11 B DG 33 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog27 hydrog ? ? A DC 13 N4 ? ? ? 1_555 B DG 12 N7 ? ? A DC 12 B DG 34 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog28 hydrog ? ? A DG 14 N7 ? ? ? 1_555 B DG 11 N1 ? ? A DG 13 B DG 33 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog29 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DG 11 N2 ? ? A DG 13 B DG 33 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog30 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DA 9 N6 ? ? A DA 14 B DA 31 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog31 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DA 9 N7 ? ? A DA 14 B DA 31 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog32 hydrog ? ? A DA 15 N1 ? ? ? 1_555 B DA 10 N6 ? ? A DA 14 B DA 32 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog33 hydrog ? ? A DA 15 N6 ? ? ? 1_555 B DA 10 N7 ? ? A DA 14 B DA 32 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog34 hydrog ? ? A DT 16 N3 ? ? ? 1_555 B DA 9 N7 ? ? A DT 15 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog35 hydrog ? ? A DT 16 O2 ? ? ? 1_555 B DA 9 N6 ? ? A DT 15 B DA 31 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog36 hydrog ? ? A DA 18 N6 ? ? ? 1_555 B DG 8 N3 ? ? A DA 17 B DG 30 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog37 hydrog ? ? A DA 18 N7 ? ? ? 1_555 B DG 8 N2 ? ? A DA 17 B DG 30 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog38 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 18 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 18 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 18 B DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DA 20 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 19 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DA 20 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 19 B DT 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DA 21 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 20 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DA 21 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 20 B DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DA 22 N1 ? ? ? 1_555 B DT 4 N3 ? ? A DA 21 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DA 22 N6 ? ? ? 1_555 B DT 4 O4 ? ? A DA 21 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 23 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 22 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DC 23 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 22 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DC 23 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 22 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DT 24 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 23 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DT 24 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 23 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 25 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 24 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DC 25 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 24 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A DC 25 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 24 B DG 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 213 ? 4_456 49.5 ? 2 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 232 ? 4_456 45.4 ? 3 O ? J HOH . ? A HOH 213 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 232 ? 4_456 7.8 ? 4 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 244 ? 4_456 54.9 ? 5 O ? J HOH . ? A HOH 213 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 244 ? 4_456 8.3 ? 6 O ? J HOH . ? A HOH 232 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 244 ? 4_456 9.5 ? 7 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 271 ? 4_456 52.7 ? 8 O ? J HOH . ? A HOH 213 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 271 ? 4_456 13.5 ? 9 O ? J HOH . ? A HOH 232 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 271 ? 4_456 9.4 ? 10 O ? J HOH . ? A HOH 244 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 271 ? 4_456 7.4 ? 11 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 272 ? 4_456 59.2 ? 12 O ? J HOH . ? A HOH 213 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 272 ? 4_456 14.3 ? 13 O ? J HOH . ? A HOH 232 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 272 ? 4_456 14.2 ? 14 O ? J HOH . ? A HOH 244 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 272 ? 4_456 6.0 ? 15 O ? J HOH . ? A HOH 271 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 272 ? 4_456 7.3 ? 16 O4 ? A DT 9 ? A DT 8 ? 1_555 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 275 ? 4_456 53.1 ? 17 O ? J HOH . ? A HOH 213 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 275 ? 4_456 3.7 ? 18 O ? J HOH . ? A HOH 232 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 275 ? 4_456 10.2 ? 19 O ? J HOH . ? A HOH 244 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 275 ? 4_456 6.6 ? 20 O ? J HOH . ? A HOH 271 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 275 ? 4_456 13.3 ? 21 O ? J HOH . ? A HOH 272 ? 4_456 CA ? E CA . ? A CA 103 ? 4_556 O ? J HOH . ? A HOH 275 ? 4_456 12.2 ? 22 OP1 ? A DT 16 ? A DT 15 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 238 ? 4_556 76.4 ? 23 OP1 ? A DT 16 ? A DT 15 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 263 ? 1_555 65.0 ? 24 O ? J HOH . ? A HOH 238 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 263 ? 1_555 79.6 ? 25 OP1 ? A DT 16 ? A DT 15 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 265 ? 4_556 92.5 ? 26 O ? J HOH . ? A HOH 238 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 265 ? 4_556 71.4 ? 27 O ? J HOH . ? A HOH 263 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 265 ? 4_556 147.0 ? 28 OP1 ? A DT 16 ? A DT 15 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 216 ? 4_566 121.2 ? 29 O ? J HOH . ? A HOH 238 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 216 ? 4_566 141.8 ? 30 O ? J HOH . ? A HOH 263 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 216 ? 4_566 137.8 ? 31 O ? J HOH . ? A HOH 265 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 216 ? 4_566 74.1 ? 32 OP1 ? A DT 16 ? A DT 15 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 221 ? 1_655 155.3 ? 33 O ? J HOH . ? A HOH 238 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 221 ? 1_655 83.4 ? 34 O ? J HOH . ? A HOH 263 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 221 ? 1_655 97.7 ? 35 O ? J HOH . ? A HOH 265 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 221 ? 1_655 94.3 ? 36 O ? K HOH . ? B HOH 216 ? 4_566 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 221 ? 1_655 83.5 ? 37 OP1 ? A DT 16 ? A DT 15 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 242 ? 4_566 94.8 ? 38 O ? J HOH . ? A HOH 238 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 242 ? 4_566 147.3 ? 39 O ? J HOH . ? A HOH 263 ? 1_555 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 242 ? 4_566 68.3 ? 40 O ? J HOH . ? A HOH 265 ? 4_556 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 242 ? 4_566 141.1 ? 41 O ? K HOH . ? B HOH 216 ? 4_566 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 242 ? 4_566 69.5 ? 42 O ? K HOH . ? B HOH 221 ? 1_655 CA ? F CA . ? A CA 104 ? 1_555 O ? K HOH . ? B HOH 242 ? 4_566 94.7 ? 43 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 228 ? 4_556 84.7 ? 44 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 233 ? 1_555 96.0 ? 45 O ? J HOH . ? A HOH 228 ? 4_556 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 233 ? 1_555 177.7 ? 46 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 278 ? 1_555 90.6 ? 47 O ? J HOH . ? A HOH 228 ? 4_556 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 278 ? 1_555 97.9 ? 48 O ? J HOH . ? A HOH 233 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 278 ? 1_555 84.3 ? 49 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 279 ? 1_555 95.2 ? 50 O ? J HOH . ? A HOH 228 ? 4_556 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 279 ? 1_555 90.7 ? 51 O ? J HOH . ? A HOH 233 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 279 ? 1_555 87.1 ? 52 O ? J HOH . ? A HOH 278 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 279 ? 1_555 170.1 ? 53 OP1 ? A DG 17 ? A DG 16 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? B HOH 219 ? 4_556 176.1 ? 54 O ? J HOH . ? A HOH 228 ? 4_556 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? B HOH 219 ? 4_556 92.1 ? 55 O ? J HOH . ? A HOH 233 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? B HOH 219 ? 4_556 87.2 ? 56 O ? J HOH . ? A HOH 278 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? B HOH 219 ? 4_556 87.5 ? 57 O ? J HOH . ? A HOH 279 ? 1_555 CA ? D CA . ? A CA 102 ? 1_555 O ? K HOH . ? B HOH 219 ? 4_556 87.1 ? 58 O ? J HOH . ? A HOH 210 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 226 ? 1_555 95.0 ? 59 O ? J HOH . ? A HOH 210 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 231 ? 4_556 90.2 ? 60 O ? J HOH . ? A HOH 226 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 231 ? 4_556 155.1 ? 61 O ? J HOH . ? A HOH 210 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 240 ? 1_555 149.6 ? 62 O ? J HOH . ? A HOH 226 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 240 ? 1_555 71.1 ? 63 O ? J HOH . ? A HOH 231 ? 4_556 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 240 ? 1_555 92.4 ? 64 O ? J HOH . ? A HOH 210 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 242 ? 1_555 81.1 ? 65 O ? J HOH . ? A HOH 226 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 242 ? 1_555 84.3 ? 66 O ? J HOH . ? A HOH 231 ? 4_556 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 242 ? 1_555 72.4 ? 67 O ? J HOH . ? A HOH 240 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 242 ? 1_555 70.9 ? 68 O ? J HOH . ? A HOH 210 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 255 ? 1_555 77.4 ? 69 O ? J HOH . ? A HOH 226 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 255 ? 1_555 70.8 ? 70 O ? J HOH . ? A HOH 231 ? 4_556 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 255 ? 1_555 134.1 ? 71 O ? J HOH . ? A HOH 240 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 255 ? 1_555 120.1 ? 72 O ? J HOH . ? A HOH 242 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 255 ? 1_555 145.2 ? 73 O ? J HOH . ? A HOH 210 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 283 ? 1_555 147.6 ? 74 O ? J HOH . ? A HOH 226 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 283 ? 1_555 106.0 ? 75 O ? J HOH . ? A HOH 231 ? 4_556 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 283 ? 1_555 81.2 ? 76 O ? J HOH . ? A HOH 240 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 283 ? 1_555 62.4 ? 77 O ? J HOH . ? A HOH 242 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 283 ? 1_555 124.6 ? 78 O ? J HOH . ? A HOH 255 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 283 ? 1_555 86.4 ? 79 O ? J HOH . ? A HOH 210 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 292 ? 1_555 65.6 ? 80 O ? J HOH . ? A HOH 226 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 292 ? 1_555 135.4 ? 81 O ? J HOH . ? A HOH 231 ? 4_556 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 292 ? 1_555 68.5 ? 82 O ? J HOH . ? A HOH 240 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 292 ? 1_555 142.4 ? 83 O ? J HOH . ? A HOH 242 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 292 ? 1_555 127.5 ? 84 O ? J HOH . ? A HOH 255 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 292 ? 1_555 66.1 ? 85 O ? J HOH . ? A HOH 283 ? 1_555 CA ? G CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 292 ? 1_555 82.2 ? 86 O ? J HOH . ? A HOH 224 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? J HOH . ? A HOH 267 ? 4_456 144.2 ? 87 O ? J HOH . ? A HOH 224 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? J HOH . ? A HOH 281 ? 1_555 80.3 ? 88 O ? J HOH . ? A HOH 267 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? J HOH . ? A HOH 281 ? 1_555 68.1 ? 89 O ? J HOH . ? A HOH 224 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? J HOH . ? A HOH 289 ? 4_456 83.6 ? 90 O ? J HOH . ? A HOH 267 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? J HOH . ? A HOH 289 ? 4_456 86.8 ? 91 O ? J HOH . ? A HOH 281 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? J HOH . ? A HOH 289 ? 4_456 102.1 ? 92 O ? J HOH . ? A HOH 224 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 77.8 ? 93 O ? J HOH . ? A HOH 267 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 115.6 ? 94 O ? J HOH . ? A HOH 281 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 87.2 ? 95 O ? J HOH . ? A HOH 289 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 209 ? 1_555 157.6 ? 96 O ? J HOH . ? A HOH 224 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 239 ? 1_555 74.9 ? 97 O ? J HOH . ? A HOH 267 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 239 ? 1_555 139.2 ? 98 O ? J HOH . ? A HOH 281 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 239 ? 1_555 152.0 ? 99 O ? J HOH . ? A HOH 289 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 239 ? 1_555 87.9 ? 100 O ? K HOH . ? B HOH 209 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 239 ? 1_555 75.3 ? 101 O ? J HOH . ? A HOH 224 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 246 ? 1_555 139.9 ? 102 O ? J HOH . ? A HOH 267 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 246 ? 1_555 73.2 ? 103 O ? J HOH . ? A HOH 281 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 246 ? 1_555 139.8 ? 104 O ? J HOH . ? A HOH 289 ? 4_456 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 246 ? 1_555 85.8 ? 105 O ? K HOH . ? B HOH 209 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 246 ? 1_555 100.3 ? 106 O ? K HOH . ? B HOH 239 ? 1_555 CA ? I CA . ? B CA 101 ? 1_555 O ? K HOH . ? B HOH 246 ? 1_555 66.2 ? # _pdbx_entry_details.entry_id 9URP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP2 A DA 17 ? ? O A HOH 201 ? ? 1.85 2 1 O B HOH 201 ? ? O B HOH 215 ? ? 1.94 3 1 OP1 B DA 31 ? ? O B HOH 201 ? ? 1.99 4 1 O A HOH 201 ? ? O A HOH 215 ? ? 2.04 5 1 O A HOH 202 ? ? O A HOH 276 ? ? 2.09 6 1 O B HOH 201 ? ? O B HOH 230 ? ? 2.10 7 1 O A HOH 202 ? ? O A HOH 217 ? ? 2.11 8 1 OP1 A DG 11 ? ? O A HOH 202 ? ? 2.12 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DG _pdbx_validate_rmsd_angle.auth_seq_id_1 13 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DG _pdbx_validate_rmsd_angle.auth_seq_id_2 13 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N9 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DG _pdbx_validate_rmsd_angle.auth_seq_id_3 13 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 110.51 _pdbx_validate_rmsd_angle.angle_target_value 108.30 _pdbx_validate_rmsd_angle.angle_deviation 2.21 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.30 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 25.3047717424 _pdbx_refine_tls.origin_y 17.7887556223 _pdbx_refine_tls.origin_z 59.6331947056 _pdbx_refine_tls.T[1][1] 0.14643476151 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.0339856706721 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.036624825558 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.169410575656 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0215201903891 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.177118354648 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 4.18821558269 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.400317437383 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.0765379841049 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 3.29657003569 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] 1.14030269285 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 0.873348082876 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0396230643603 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] 0.157773359277 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.343984792374 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.0234491462429 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.116278508302 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.201900089662 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] -0.22837337061 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -0.118203778003 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] 0.0215606195669 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id I _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id D _pdbx_refine_tls_group.end_auth_seq_id 1 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id DT _pdbx_unobs_or_zero_occ_residues.auth_seq_id 25 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id DT _pdbx_unobs_or_zero_occ_residues.label_seq_id 26 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADN "O5'" O N N 1 ADN "C5'" C N N 2 ADN "C4'" C N R 3 ADN "O4'" O N N 4 ADN "C3'" C N S 5 ADN "O3'" O N N 6 ADN "C2'" C N R 7 ADN "O2'" O N N 8 ADN "C1'" C N R 9 ADN N9 N Y N 10 ADN C8 C Y N 11 ADN N7 N Y N 12 ADN C5 C Y N 13 ADN C6 C Y N 14 ADN N6 N N N 15 ADN N1 N Y N 16 ADN C2 C Y N 17 ADN N3 N Y N 18 ADN C4 C Y N 19 ADN "HO5'" H N N 20 ADN "H5'1" H N N 21 ADN "H5'2" H N N 22 ADN "H4'" H N N 23 ADN "H3'" H N N 24 ADN "HO3'" H N N 25 ADN "H2'" H N N 26 ADN "HO2'" H N N 27 ADN "H1'" H N N 28 ADN H8 H N N 29 ADN HN61 H N N 30 ADN HN62 H N N 31 ADN H2 H N N 32 C38 O3P O N N 33 C38 P P N N 34 C38 O1P O N N 35 C38 O2P O N N 36 C38 "O5'" O N N 37 C38 "C5'" C N N 38 C38 "C4'" C N R 39 C38 "O4'" O N N 40 C38 "C3'" C N S 41 C38 "O3'" O N N 42 C38 "C2'" C N N 43 C38 "C1'" C N R 44 C38 N1 N N N 45 C38 C2 C N N 46 C38 O2 O N N 47 C38 N3 N N N 48 C38 C4 C N N 49 C38 N4 N N N 50 C38 C5 C N N 51 C38 C6 C N N 52 C38 I I N N 53 C38 H3P H N N 54 C38 H2P H N N 55 C38 "H5'1" H N N 56 C38 "H5'2" H N N 57 C38 "H4'" H N N 58 C38 "H3'" H N N 59 C38 HA H N N 60 C38 "H2'1" H N N 61 C38 "H2'2" H N N 62 C38 "H1'" H N N 63 C38 H4N1 H N N 64 C38 H4N2 H N N 65 C38 H6 H N N 66 CA CA CA N N 67 DA OP3 O N N 68 DA P P N N 69 DA OP1 O N N 70 DA OP2 O N N 71 DA "O5'" O N N 72 DA "C5'" C N N 73 DA "C4'" C N R 74 DA "O4'" O N N 75 DA "C3'" C N S 76 DA "O3'" O N N 77 DA "C2'" C N N 78 DA "C1'" C N R 79 DA N9 N Y N 80 DA C8 C Y N 81 DA N7 N Y N 82 DA C5 C Y N 83 DA C6 C Y N 84 DA N6 N N N 85 DA N1 N Y N 86 DA C2 C Y N 87 DA N3 N Y N 88 DA C4 C Y N 89 DA HOP3 H N N 90 DA HOP2 H N N 91 DA "H5'" H N N 92 DA "H5''" H N N 93 DA "H4'" H N N 94 DA "H3'" H N N 95 DA "HO3'" H N N 96 DA "H2'" H N N 97 DA "H2''" H N N 98 DA "H1'" H N N 99 DA H8 H N N 100 DA H61 H N N 101 DA H62 H N N 102 DA H2 H N N 103 DC OP3 O N N 104 DC P P N N 105 DC OP1 O N N 106 DC OP2 O N N 107 DC "O5'" O N N 108 DC "C5'" C N N 109 DC "C4'" C N R 110 DC "O4'" O N N 111 DC "C3'" C N S 112 DC "O3'" O N N 113 DC "C2'" C N N 114 DC "C1'" C N R 115 DC N1 N N N 116 DC C2 C N N 117 DC O2 O N N 118 DC N3 N N N 119 DC C4 C N N 120 DC N4 N N N 121 DC C5 C N N 122 DC C6 C N N 123 DC HOP3 H N N 124 DC HOP2 H N N 125 DC "H5'" H N N 126 DC "H5''" H N N 127 DC "H4'" H N N 128 DC "H3'" H N N 129 DC "HO3'" H N N 130 DC "H2'" H N N 131 DC "H2''" H N N 132 DC "H1'" H N N 133 DC H41 H N N 134 DC H42 H N N 135 DC H5 H N N 136 DC H6 H N N 137 DG OP3 O N N 138 DG P P N N 139 DG OP1 O N N 140 DG OP2 O N N 141 DG "O5'" O N N 142 DG "C5'" C N N 143 DG "C4'" C N R 144 DG "O4'" O N N 145 DG "C3'" C N S 146 DG "O3'" O N N 147 DG "C2'" C N N 148 DG "C1'" C N R 149 DG N9 N Y N 150 DG C8 C Y N 151 DG N7 N Y N 152 DG C5 C Y N 153 DG C6 C N N 154 DG O6 O N N 155 DG N1 N N N 156 DG C2 C N N 157 DG N2 N N N 158 DG N3 N N N 159 DG C4 C Y N 160 DG HOP3 H N N 161 DG HOP2 H N N 162 DG "H5'" H N N 163 DG "H5''" H N N 164 DG "H4'" H N N 165 DG "H3'" H N N 166 DG "HO3'" H N N 167 DG "H2'" H N N 168 DG "H2''" H N N 169 DG "H1'" H N N 170 DG H8 H N N 171 DG H1 H N N 172 DG H21 H N N 173 DG H22 H N N 174 DT OP3 O N N 175 DT P P N N 176 DT OP1 O N N 177 DT OP2 O N N 178 DT "O5'" O N N 179 DT "C5'" C N N 180 DT "C4'" C N R 181 DT "O4'" O N N 182 DT "C3'" C N S 183 DT "O3'" O N N 184 DT "C2'" C N N 185 DT "C1'" C N R 186 DT N1 N N N 187 DT C2 C N N 188 DT O2 O N N 189 DT N3 N N N 190 DT C4 C N N 191 DT O4 O N N 192 DT C5 C N N 193 DT C7 C N N 194 DT C6 C N N 195 DT HOP3 H N N 196 DT HOP2 H N N 197 DT "H5'" H N N 198 DT "H5''" H N N 199 DT "H4'" H N N 200 DT "H3'" H N N 201 DT "HO3'" H N N 202 DT "H2'" H N N 203 DT "H2''" H N N 204 DT "H1'" H N N 205 DT H3 H N N 206 DT H71 H N N 207 DT H72 H N N 208 DT H73 H N N 209 DT H6 H N N 210 HOH O O N N 211 HOH H1 H N N 212 HOH H2 H N N 213 NA NA NA N N 214 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADN "O5'" "C5'" sing N N 1 ADN "O5'" "HO5'" sing N N 2 ADN "C5'" "C4'" sing N N 3 ADN "C5'" "H5'1" sing N N 4 ADN "C5'" "H5'2" sing N N 5 ADN "C4'" "O4'" sing N N 6 ADN "C4'" "C3'" sing N N 7 ADN "C4'" "H4'" sing N N 8 ADN "O4'" "C1'" sing N N 9 ADN "C3'" "O3'" sing N N 10 ADN "C3'" "C2'" sing N N 11 ADN "C3'" "H3'" sing N N 12 ADN "O3'" "HO3'" sing N N 13 ADN "C2'" "O2'" sing N N 14 ADN "C2'" "C1'" sing N N 15 ADN "C2'" "H2'" sing N N 16 ADN "O2'" "HO2'" sing N N 17 ADN "C1'" N9 sing N N 18 ADN "C1'" "H1'" sing N N 19 ADN N9 C8 sing Y N 20 ADN N9 C4 sing Y N 21 ADN C8 N7 doub Y N 22 ADN C8 H8 sing N N 23 ADN N7 C5 sing Y N 24 ADN C5 C6 sing Y N 25 ADN C5 C4 doub Y N 26 ADN C6 N6 sing N N 27 ADN C6 N1 doub Y N 28 ADN N6 HN61 sing N N 29 ADN N6 HN62 sing N N 30 ADN N1 C2 sing Y N 31 ADN C2 N3 doub Y N 32 ADN C2 H2 sing N N 33 ADN N3 C4 sing Y N 34 C38 O3P P sing N N 35 C38 O3P H3P sing N N 36 C38 P O1P doub N N 37 C38 P O2P sing N N 38 C38 P "O5'" sing N N 39 C38 O2P H2P sing N N 40 C38 "O5'" "C5'" sing N N 41 C38 "C5'" "C4'" sing N N 42 C38 "C5'" "H5'1" sing N N 43 C38 "C5'" "H5'2" sing N N 44 C38 "C4'" "O4'" sing N N 45 C38 "C4'" "C3'" sing N N 46 C38 "C4'" "H4'" sing N N 47 C38 "O4'" "C1'" sing N N 48 C38 "C3'" "O3'" sing N N 49 C38 "C3'" "C2'" sing N N 50 C38 "C3'" "H3'" sing N N 51 C38 "O3'" HA sing N N 52 C38 "C2'" "C1'" sing N N 53 C38 "C2'" "H2'1" sing N N 54 C38 "C2'" "H2'2" sing N N 55 C38 "C1'" N1 sing N N 56 C38 "C1'" "H1'" sing N N 57 C38 N1 C2 sing N N 58 C38 N1 C6 sing N N 59 C38 C2 O2 doub N N 60 C38 C2 N3 sing N N 61 C38 N3 C4 doub N N 62 C38 C4 N4 sing N N 63 C38 C4 C5 sing N N 64 C38 N4 H4N1 sing N N 65 C38 N4 H4N2 sing N N 66 C38 C5 C6 doub N N 67 C38 C5 I sing N N 68 C38 C6 H6 sing N N 69 DA OP3 P sing N N 70 DA OP3 HOP3 sing N N 71 DA P OP1 doub N N 72 DA P OP2 sing N N 73 DA P "O5'" sing N N 74 DA OP2 HOP2 sing N N 75 DA "O5'" "C5'" sing N N 76 DA "C5'" "C4'" sing N N 77 DA "C5'" "H5'" sing N N 78 DA "C5'" "H5''" sing N N 79 DA "C4'" "O4'" sing N N 80 DA "C4'" "C3'" sing N N 81 DA "C4'" "H4'" sing N N 82 DA "O4'" "C1'" sing N N 83 DA "C3'" "O3'" sing N N 84 DA "C3'" "C2'" sing N N 85 DA "C3'" "H3'" sing N N 86 DA "O3'" "HO3'" sing N N 87 DA "C2'" "C1'" sing N N 88 DA "C2'" "H2'" sing N N 89 DA "C2'" "H2''" sing N N 90 DA "C1'" N9 sing N N 91 DA "C1'" "H1'" sing N N 92 DA N9 C8 sing Y N 93 DA N9 C4 sing Y N 94 DA C8 N7 doub Y N 95 DA C8 H8 sing N N 96 DA N7 C5 sing Y N 97 DA C5 C6 sing Y N 98 DA C5 C4 doub Y N 99 DA C6 N6 sing N N 100 DA C6 N1 doub Y N 101 DA N6 H61 sing N N 102 DA N6 H62 sing N N 103 DA N1 C2 sing Y N 104 DA C2 N3 doub Y N 105 DA C2 H2 sing N N 106 DA N3 C4 sing Y N 107 DC OP3 P sing N N 108 DC OP3 HOP3 sing N N 109 DC P OP1 doub N N 110 DC P OP2 sing N N 111 DC P "O5'" sing N N 112 DC OP2 HOP2 sing N N 113 DC "O5'" "C5'" sing N N 114 DC "C5'" "C4'" sing N N 115 DC "C5'" "H5'" sing N N 116 DC "C5'" "H5''" sing N N 117 DC "C4'" "O4'" sing N N 118 DC "C4'" "C3'" sing N N 119 DC "C4'" "H4'" sing N N 120 DC "O4'" "C1'" sing N N 121 DC "C3'" "O3'" sing N N 122 DC "C3'" "C2'" sing N N 123 DC "C3'" "H3'" sing N N 124 DC "O3'" "HO3'" sing N N 125 DC "C2'" "C1'" sing N N 126 DC "C2'" "H2'" sing N N 127 DC "C2'" "H2''" sing N N 128 DC "C1'" N1 sing N N 129 DC "C1'" "H1'" sing N N 130 DC N1 C2 sing N N 131 DC N1 C6 sing N N 132 DC C2 O2 doub N N 133 DC C2 N3 sing N N 134 DC N3 C4 doub N N 135 DC C4 N4 sing N N 136 DC C4 C5 sing N N 137 DC N4 H41 sing N N 138 DC N4 H42 sing N N 139 DC C5 C6 doub N N 140 DC C5 H5 sing N N 141 DC C6 H6 sing N N 142 DG OP3 P sing N N 143 DG OP3 HOP3 sing N N 144 DG P OP1 doub N N 145 DG P OP2 sing N N 146 DG P "O5'" sing N N 147 DG OP2 HOP2 sing N N 148 DG "O5'" "C5'" sing N N 149 DG "C5'" "C4'" sing N N 150 DG "C5'" "H5'" sing N N 151 DG "C5'" "H5''" sing N N 152 DG "C4'" "O4'" sing N N 153 DG "C4'" "C3'" sing N N 154 DG "C4'" "H4'" sing N N 155 DG "O4'" "C1'" sing N N 156 DG "C3'" "O3'" sing N N 157 DG "C3'" "C2'" sing N N 158 DG "C3'" "H3'" sing N N 159 DG "O3'" "HO3'" sing N N 160 DG "C2'" "C1'" sing N N 161 DG "C2'" "H2'" sing N N 162 DG "C2'" "H2''" sing N N 163 DG "C1'" N9 sing N N 164 DG "C1'" "H1'" sing N N 165 DG N9 C8 sing Y N 166 DG N9 C4 sing Y N 167 DG C8 N7 doub Y N 168 DG C8 H8 sing N N 169 DG N7 C5 sing Y N 170 DG C5 C6 sing N N 171 DG C5 C4 doub Y N 172 DG C6 O6 doub N N 173 DG C6 N1 sing N N 174 DG N1 C2 sing N N 175 DG N1 H1 sing N N 176 DG C2 N2 sing N N 177 DG C2 N3 doub N N 178 DG N2 H21 sing N N 179 DG N2 H22 sing N N 180 DG N3 C4 sing N N 181 DT OP3 P sing N N 182 DT OP3 HOP3 sing N N 183 DT P OP1 doub N N 184 DT P OP2 sing N N 185 DT P "O5'" sing N N 186 DT OP2 HOP2 sing N N 187 DT "O5'" "C5'" sing N N 188 DT "C5'" "C4'" sing N N 189 DT "C5'" "H5'" sing N N 190 DT "C5'" "H5''" sing N N 191 DT "C4'" "O4'" sing N N 192 DT "C4'" "C3'" sing N N 193 DT "C4'" "H4'" sing N N 194 DT "O4'" "C1'" sing N N 195 DT "C3'" "O3'" sing N N 196 DT "C3'" "C2'" sing N N 197 DT "C3'" "H3'" sing N N 198 DT "O3'" "HO3'" sing N N 199 DT "C2'" "C1'" sing N N 200 DT "C2'" "H2'" sing N N 201 DT "C2'" "H2''" sing N N 202 DT "C1'" N1 sing N N 203 DT "C1'" "H1'" sing N N 204 DT N1 C2 sing N N 205 DT N1 C6 sing N N 206 DT C2 O2 doub N N 207 DT C2 N3 sing N N 208 DT N3 C4 sing N N 209 DT N3 H3 sing N N 210 DT C4 O4 doub N N 211 DT C4 C5 sing N N 212 DT C5 C7 sing N N 213 DT C5 C6 doub N N 214 DT C7 H71 sing N N 215 DT C7 H72 sing N N 216 DT C7 H73 sing N N 217 DT C6 H6 sing N N 218 HOH O H1 sing N N 219 HOH O H2 sing N N 220 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9URP 'double helix' 9URP 'a-form double helix' 9URP 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 18 1_555 -0.449 -0.267 0.336 -8.788 -12.528 3.755 1 A_DT0:DA40_B A 0 ? B 40 ? 20 1 1 A DC 2 1_555 B DG 17 1_555 0.062 -0.225 0.152 -4.809 -9.649 1.543 2 A_DC1:DG39_B A 1 ? B 39 ? 19 1 1 A DA 3 1_555 B DT 16 1_555 -0.185 -0.089 0.384 -0.944 -7.958 0.839 3 A_DA2:DT38_B A 2 ? B 38 ? 20 1 1 A DC 4 1_555 B DG 15 1_555 0.344 -0.276 0.209 2.202 -8.298 0.496 4 A_DC3:DG37_B A 3 ? B 37 ? 19 1 1 A DG 5 1_555 B C38 14 1_555 -0.203 -0.160 0.056 7.257 -4.730 -0.123 5 A_DG4:C3836_B A 4 ? B 36 ? 19 1 1 A DA 6 1_555 B DT 13 1_555 0.020 -0.201 0.345 21.233 -12.447 5.488 6 A_DA5:DT35_B A 5 ? B 35 ? 20 1 1 A DC 7 1_555 B DG 12 1_555 0.161 -0.140 0.394 7.944 -21.794 -0.639 7 A_DC6:DG34_B A 6 ? B 34 ? 19 1 1 A DG 8 1_555 A DG 12 1_555 5.583 -0.453 -0.243 0.636 -9.070 -110.729 8 A_DG7:DG11_A A 7 ? A 11 ? 7 4 1 B DA 10 1_555 A DT 11 1_555 0.169 1.199 -0.025 -7.724 11.910 167.851 9 B_DA32:DT10_A B 32 ? A 10 ? 21 2 1 A DT 10 1_555 B DA 9 1_555 -0.169 -1.104 0.588 -7.533 13.502 -176.924 10 A_DT9:DA31_B A 9 ? B 31 ? 21 2 1 A DG 14 1_555 B DG 11 1_555 -5.756 -0.280 0.155 -33.888 -4.841 -118.369 11 A_DG13:DG33_B A 13 ? B 33 ? 7 4 1 A DA 18 1_555 B DG 8 1_555 -6.775 -4.172 0.595 -17.678 -1.309 5.528 12 A_DA17:DG30_B A 17 ? B 30 ? 11 9 1 A DG 19 1_555 B DC 7 1_555 -0.386 -0.170 0.002 8.419 0.607 -0.146 13 A_DG18:DC29_B A 18 ? B 29 ? 19 1 1 A DA 20 1_555 B DT 6 1_555 0.141 -0.061 0.093 11.751 -15.540 0.611 14 A_DA19:DT28_B A 19 ? B 28 ? 20 1 1 A DA 21 1_555 B DT 5 1_555 -0.091 -0.270 0.166 5.935 -19.542 4.262 15 A_DA20:DT27_B A 20 ? B 27 ? 20 1 1 A DA 22 1_555 B DT 4 1_555 0.307 0.028 0.301 9.756 -17.301 7.840 16 A_DA21:DT26_B A 21 ? B 26 ? 20 1 1 A DC 23 1_555 B DG 3 1_555 0.648 -0.144 -0.023 0.522 -13.971 7.302 17 A_DC22:DG25_B A 22 ? B 25 ? 19 1 1 A DT 24 1_555 B DA 2 1_555 0.096 -0.002 0.049 -11.559 -6.500 5.984 18 A_DT23:DA24_B A 23 ? B 24 ? 20 1 1 A DC 25 1_555 B DG 1 1_555 0.123 -0.207 -0.044 -1.120 -9.595 -2.338 19 A_DC24:DG23_B A 24 ? B 23 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 18 1_555 A DC 2 1_555 B DG 17 1_555 0.209 0.477 3.246 2.378 -3.433 41.079 1.042 -0.044 3.204 -4.877 -3.379 41.281 1 AA_DT0DC1:DG39DA40_BB A 0 ? B 40 ? A 1 ? B 39 ? 1 A DC 2 1_555 B DG 17 1_555 A DA 3 1_555 B DT 16 1_555 -0.367 1.706 3.290 -3.102 -0.595 40.919 2.499 0.184 3.284 -0.849 4.429 41.035 2 AA_DC1DA2:DT38DG39_BB A 1 ? B 39 ? A 2 ? B 38 ? 1 A DA 3 1_555 B DT 16 1_555 A DC 4 1_555 B DG 15 1_555 0.034 -0.251 3.275 0.592 0.667 32.270 -0.570 0.044 3.269 1.200 -1.065 32.282 3 AA_DA2DC3:DG37DT38_BB A 2 ? B 38 ? A 3 ? B 37 ? 1 A DC 4 1_555 B DG 15 1_555 A DG 5 1_555 B C38 14 1_555 0.211 0.142 3.163 1.446 4.450 34.327 -0.426 -0.138 3.162 7.496 -2.436 34.635 4 AA_DC3DG4:C3836DG37_BB A 3 ? B 37 ? A 4 ? B 36 ? 1 A DG 5 1_555 B C38 14 1_555 A DA 6 1_555 B DT 13 1_555 0.581 -0.377 2.947 -4.414 8.205 31.663 -1.887 -1.681 2.666 14.646 7.879 32.971 5 AA_DG4DA5:DT35C3836_BB A 4 ? B 36 ? A 5 ? B 35 ? 1 A DA 6 1_555 B DT 13 1_555 A DC 7 1_555 B DG 12 1_555 -0.262 -1.026 3.560 -4.104 -1.831 41.062 -1.239 -0.113 3.609 -2.601 5.830 41.297 6 AA_DA5DC6:DG34DT35_BB A 5 ? B 35 ? A 6 ? B 34 ? 1 A DC 7 1_555 B DG 12 1_555 A DG 8 1_555 A DG 12 1_555 -1.445 -1.153 3.369 8.824 1.533 89.453 -0.848 1.205 3.232 1.087 -6.257 89.805 7 AA_DC6DG7:DG11DG34_AB A 6 ? B 34 ? A 7 ? A 11 ? 1 A DG 8 1_555 A DG 12 1_555 B DA 10 1_555 A DT 11 1_555 -4.852 2.969 0.396 162.615 25.277 40.496 1.686 1.223 -3.927 13.412 -86.279 165.527 8 AB_DG7DA32:DT10DG11_AA A 7 ? A 11 ? B 32 ? A 10 ? 1 A DT 10 1_555 B DA 9 1_555 A DG 14 1_555 B DG 11 1_555 3.357 5.146 3.366 73.464 -157.335 -68.045 -0.664 2.573 4.572 79.935 37.324 -174.731 9 AA_DT9DG13:DG33DA31_BB A 9 ? B 31 ? A 13 ? B 33 ? 1 A DA 18 1_555 B DG 8 1_555 A DG 19 1_555 B DC 7 1_555 -0.633 1.691 2.933 0.738 7.431 57.374 1.380 0.691 3.104 7.704 -0.765 57.817 10 AA_DA17DG18:DC29DG30_BB A 17 ? B 30 ? A 18 ? B 29 ? 1 A DG 19 1_555 B DC 7 1_555 A DA 20 1_555 B DT 6 1_555 -0.840 0.763 3.313 -3.396 2.388 39.338 0.838 0.831 3.410 3.536 5.028 39.548 11 AA_DG18DA19:DT28DC29_BB A 18 ? B 29 ? A 19 ? B 28 ? 1 A DA 20 1_555 B DT 6 1_555 A DA 21 1_555 B DT 5 1_555 0.288 -0.127 3.318 -0.368 1.098 35.414 -0.372 -0.528 3.310 1.804 0.605 35.432 12 AA_DA19DA20:DT27DT28_BB A 19 ? B 28 ? A 20 ? B 27 ? 1 A DA 21 1_555 B DT 5 1_555 A DA 22 1_555 B DT 4 1_555 0.302 -0.205 3.080 -1.603 -0.673 38.581 -0.232 -0.642 3.068 -1.018 2.424 38.619 13 AA_DA20DA21:DT26DT27_BB A 20 ? B 27 ? A 21 ? B 26 ? 1 A DA 22 1_555 B DT 4 1_555 A DC 23 1_555 B DG 3 1_555 0.080 -0.526 3.408 0.734 1.275 35.617 -1.051 -0.019 3.388 2.084 -1.199 35.646 14 AA_DA21DC22:DG25DT26_BB A 21 ? B 26 ? A 22 ? B 25 ? 1 A DC 23 1_555 B DG 3 1_555 A DT 24 1_555 B DA 2 1_555 0.059 -0.727 3.482 3.295 3.424 34.441 -1.768 0.432 3.387 5.749 -5.531 34.757 15 AA_DC22DT23:DA24DG25_BB A 22 ? B 25 ? A 23 ? B 24 ? 1 A DT 24 1_555 B DA 2 1_555 A DC 25 1_555 B DG 1 1_555 -0.025 0.214 3.059 0.141 -2.139 41.353 0.516 0.050 3.045 -3.026 -0.200 41.406 16 AA_DT23DC24:DG23DA24_BB A 23 ? B 24 ? A 24 ? B 23 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9URP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.036514 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026662 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008250 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? I ? ? 40.26819 12.56501 ? ? 1.42647 27.02115 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? ? ? ? ? ? ? ? ? ? ? ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #