data_9URU # _entry.id 9URU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9URU pdb_00009uru 10.2210/pdb9uru/pdb WWPDB D_1300058977 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-11-04 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9URU _pdbx_database_status.recvd_initial_deposition_date 2025-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 5 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, X.' 1 0000-0002-4502-0633 'Luo, Y.' 2 0009-0006-3449-7088 'Ren, Y.' 3 0009-0006-0959-2008 'Huang, L.' 4 0000-0002-2121-365X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of adenosine and ATP-binding DNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, X.' 1 0000-0002-4502-0633 primary 'Luo, Y.' 2 0009-0006-3449-7088 primary 'Ren, Y.' 3 0009-0006-0959-2008 primary 'Huang, L.' 4 0000-0002-2121-365X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA (44-MER)' 13618.746 1 ? ? ? ? 2 non-polymer syn ADENOSINE 267.241 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 4 ? ? ? ? 5 water nat water 18.015 131 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DT)(DA)(DC)(DG)(DA)(DC)(DA)(DC)(DG)(DG)(DA)(DG)(DG)(DC)(DT)(DT)(DA)(DG) (DT)(DT)(DT)(DG)(DC)(DT)(DA)(DA)(DA)(DT)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DG) (DT)(DA)(DC)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGTACGACACGGAGGCTTAGTTTGCTAAATGGTCATGTCGTACA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENOSINE ADN 3 'CALCIUM ION' CA 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 DC n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DC n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DT n 1 22 DT n 1 23 DT n 1 24 DG n 1 25 DC n 1 26 DT n 1 27 DA n 1 28 DA n 1 29 DA n 1 30 DT n 1 31 DG n 1 32 DG n 1 33 DT n 1 34 DC n 1 35 DA n 1 36 DT n 1 37 DG n 1 38 DT n 1 39 DC n 1 40 DG n 1 41 DT n 1 42 DA n 1 43 DC n 1 44 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 44 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'synthetic construct' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'synthetic construct' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 32630 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ADN non-polymer . ADENOSINE ? 'C10 H13 N5 O4' 267.241 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -2 -2 DT DT A . n A 1 2 DG 2 -1 -1 DG DG A . n A 1 3 DT 3 0 0 DT DT A . n A 1 4 DA 4 1 1 DA DA A . n A 1 5 DC 5 2 2 DC DC A . n A 1 6 DG 6 3 3 DG DG A . n A 1 7 DA 7 4 4 DA DA A . n A 1 8 DC 8 5 5 DC DC A . n A 1 9 DA 9 6 6 DA DA A . n A 1 10 DC 10 7 7 DC DC A . n A 1 11 DG 11 8 8 DG DG A . n A 1 12 DG 12 9 9 DG DG A . n A 1 13 DA 13 10 10 DA DA A . n A 1 14 DG 14 11 11 DG DG A . n A 1 15 DG 15 12 12 DG DG A . n A 1 16 DC 16 13 13 DC DC A . n A 1 17 DT 17 14 14 DT DT A . n A 1 18 DT 18 15 15 DT DT A . n A 1 19 DA 19 16 16 DA DA A . n A 1 20 DG 20 17 17 DG DG A . n A 1 21 DT 21 18 18 DT DT A . n A 1 22 DT 22 19 19 DT DT A . n A 1 23 DT 23 20 20 DT DT A . n A 1 24 DG 24 21 21 DG DG A . n A 1 25 DC 25 22 22 DC DC A . n A 1 26 DT 26 23 23 DT DT A . n A 1 27 DA 27 24 24 DA DA A . n A 1 28 DA 28 25 25 DA DA A . n A 1 29 DA 29 26 26 DA DA A . n A 1 30 DT 30 27 27 DT DT A . n A 1 31 DG 31 28 28 DG DG A . n A 1 32 DG 32 29 29 DG DG A . n A 1 33 DT 33 30 30 DT DT A . n A 1 34 DC 34 31 31 DC DC A . n A 1 35 DA 35 32 32 DA DA A . n A 1 36 DT 36 33 33 DT DT A . n A 1 37 DG 37 34 34 DG DG A . n A 1 38 DT 38 35 35 DT DT A . n A 1 39 DC 39 36 36 DC DC A . n A 1 40 DG 40 37 37 DG DG A . n A 1 41 DT 41 38 38 DT DT A . n A 1 42 DA 42 39 39 DA DA A . n A 1 43 DC 43 40 40 DC DC A . n A 1 44 DA 44 41 41 DA DA A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 NA ? ? NA ? ? 'SUBJECT OF INVESTIGATION' ? 2 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? 3 ADN ? ? ADN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN 1 101 101 ADN ADN A . C 3 CA 1 102 5 CA CA A . D 3 CA 1 103 6 CA CA A . E 3 CA 1 104 7 CA CA A . F 4 NA 1 105 5 NA NA A . G 4 NA 1 106 6 NA NA A . H 4 NA 1 107 7 NA NA A . I 4 NA 1 108 8 NA NA A . J 5 HOH 1 201 293 HOH HOH A . J 5 HOH 2 202 277 HOH HOH A . J 5 HOH 3 203 395 HOH HOH A . J 5 HOH 4 204 234 HOH HOH A . J 5 HOH 5 205 263 HOH HOH A . J 5 HOH 6 206 5 HOH HOH A . J 5 HOH 7 207 238 HOH HOH A . J 5 HOH 8 208 444 HOH HOH A . J 5 HOH 9 209 27 HOH HOH A . J 5 HOH 10 210 158 HOH HOH A . J 5 HOH 11 211 358 HOH HOH A . J 5 HOH 12 212 127 HOH HOH A . J 5 HOH 13 213 76 HOH HOH A . J 5 HOH 14 214 101 HOH HOH A . J 5 HOH 15 215 267 HOH HOH A . J 5 HOH 16 216 288 HOH HOH A . J 5 HOH 17 217 71 HOH HOH A . J 5 HOH 18 218 331 HOH HOH A . J 5 HOH 19 219 243 HOH HOH A . J 5 HOH 20 220 72 HOH HOH A . J 5 HOH 21 221 214 HOH HOH A . J 5 HOH 22 222 157 HOH HOH A . J 5 HOH 23 223 63 HOH HOH A . J 5 HOH 24 224 242 HOH HOH A . J 5 HOH 25 225 33 HOH HOH A . J 5 HOH 26 226 118 HOH HOH A . J 5 HOH 27 227 68 HOH HOH A . J 5 HOH 28 228 152 HOH HOH A . J 5 HOH 29 229 265 HOH HOH A . J 5 HOH 30 230 163 HOH HOH A . J 5 HOH 31 231 31 HOH HOH A . J 5 HOH 32 232 29 HOH HOH A . J 5 HOH 33 233 270 HOH HOH A . J 5 HOH 34 234 372 HOH HOH A . J 5 HOH 35 235 168 HOH HOH A . J 5 HOH 36 236 112 HOH HOH A . J 5 HOH 37 237 84 HOH HOH A . J 5 HOH 38 238 64 HOH HOH A . J 5 HOH 39 239 70 HOH HOH A . J 5 HOH 40 240 43 HOH HOH A . J 5 HOH 41 241 278 HOH HOH A . J 5 HOH 42 242 237 HOH HOH A . J 5 HOH 43 243 61 HOH HOH A . J 5 HOH 44 244 14 HOH HOH A . J 5 HOH 45 245 73 HOH HOH A . J 5 HOH 46 246 41 HOH HOH A . J 5 HOH 47 247 221 HOH HOH A . J 5 HOH 48 248 125 HOH HOH A . J 5 HOH 49 249 208 HOH HOH A . J 5 HOH 50 250 128 HOH HOH A . J 5 HOH 51 251 233 HOH HOH A . J 5 HOH 52 252 113 HOH HOH A . J 5 HOH 53 253 189 HOH HOH A . J 5 HOH 54 254 205 HOH HOH A . J 5 HOH 55 255 93 HOH HOH A . J 5 HOH 56 256 135 HOH HOH A . J 5 HOH 57 257 149 HOH HOH A . J 5 HOH 58 258 443 HOH HOH A . J 5 HOH 59 259 184 HOH HOH A . J 5 HOH 60 260 313 HOH HOH A . J 5 HOH 61 261 361 HOH HOH A . J 5 HOH 62 262 136 HOH HOH A . J 5 HOH 63 263 260 HOH HOH A . J 5 HOH 64 264 126 HOH HOH A . J 5 HOH 65 265 392 HOH HOH A . J 5 HOH 66 266 124 HOH HOH A . J 5 HOH 67 267 251 HOH HOH A . J 5 HOH 68 268 59 HOH HOH A . J 5 HOH 69 269 114 HOH HOH A . J 5 HOH 70 270 83 HOH HOH A . J 5 HOH 71 271 54 HOH HOH A . J 5 HOH 72 272 140 HOH HOH A . J 5 HOH 73 273 45 HOH HOH A . J 5 HOH 74 274 132 HOH HOH A . J 5 HOH 75 275 344 HOH HOH A . J 5 HOH 76 276 106 HOH HOH A . J 5 HOH 77 277 105 HOH HOH A . J 5 HOH 78 278 103 HOH HOH A . J 5 HOH 79 279 115 HOH HOH A . J 5 HOH 80 280 345 HOH HOH A . J 5 HOH 81 281 48 HOH HOH A . J 5 HOH 82 282 122 HOH HOH A . J 5 HOH 83 283 253 HOH HOH A . J 5 HOH 84 284 290 HOH HOH A . J 5 HOH 85 285 438 HOH HOH A . J 5 HOH 86 286 47 HOH HOH A . J 5 HOH 87 287 172 HOH HOH A . J 5 HOH 88 288 276 HOH HOH A . J 5 HOH 89 289 58 HOH HOH A . J 5 HOH 90 290 204 HOH HOH A . J 5 HOH 91 291 141 HOH HOH A . J 5 HOH 92 292 210 HOH HOH A . J 5 HOH 93 293 156 HOH HOH A . J 5 HOH 94 294 304 HOH HOH A . J 5 HOH 95 295 56 HOH HOH A . J 5 HOH 96 296 53 HOH HOH A . J 5 HOH 97 297 212 HOH HOH A . J 5 HOH 98 298 110 HOH HOH A . J 5 HOH 99 299 169 HOH HOH A . J 5 HOH 100 300 258 HOH HOH A . J 5 HOH 101 301 12 HOH HOH A . J 5 HOH 102 302 162 HOH HOH A . J 5 HOH 103 303 264 HOH HOH A . J 5 HOH 104 304 396 HOH HOH A . J 5 HOH 105 305 268 HOH HOH A . J 5 HOH 106 306 314 HOH HOH A . J 5 HOH 107 307 211 HOH HOH A . J 5 HOH 108 308 52 HOH HOH A . J 5 HOH 109 309 404 HOH HOH A . J 5 HOH 110 310 250 HOH HOH A . J 5 HOH 111 311 191 HOH HOH A . J 5 HOH 112 312 297 HOH HOH A . J 5 HOH 113 313 446 HOH HOH A . J 5 HOH 114 314 96 HOH HOH A . J 5 HOH 115 315 50 HOH HOH A . J 5 HOH 116 316 246 HOH HOH A . J 5 HOH 117 317 248 HOH HOH A . J 5 HOH 118 318 160 HOH HOH A . J 5 HOH 119 319 402 HOH HOH A . J 5 HOH 120 320 350 HOH HOH A . J 5 HOH 121 321 57 HOH HOH A . J 5 HOH 122 322 326 HOH HOH A . J 5 HOH 123 323 321 HOH HOH A . J 5 HOH 124 324 327 HOH HOH A . J 5 HOH 125 325 259 HOH HOH A . J 5 HOH 126 326 368 HOH HOH A . J 5 HOH 127 327 317 HOH HOH A . J 5 HOH 128 328 161 HOH HOH A . J 5 HOH 129 329 185 HOH HOH A . J 5 HOH 130 330 219 HOH HOH A . J 5 HOH 131 331 300 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.21.1_5286:)' ? 1 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? . ? 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . ? 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . ? 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 5 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 9URU _cell.details ? _cell.formula_units_Z ? _cell.length_a 58.600 _cell.length_a_esd ? _cell.length_b 58.600 _cell.length_b_esd ? _cell.length_c 121.760 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9URU _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9URU _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 44.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.2 M Calcium chloride dihydrate, 0.05 M HEPES sodium pH 7.5, 30% v/v Polyethylene glycol 400, 0.002 M Spermine ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-07 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97861 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97861 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9URU _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.58 _reflns.d_resolution_low 38.98 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17744 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 36.4 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 35.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.011 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.050 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.62 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1264 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.748 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.646 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 3.089 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9URU _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.58 _refine.ls_d_res_low 38.98 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17687 _refine.ls_number_reflns_R_free 1768 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.96 _refine.ls_percent_reflns_R_free 10.00 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2169 _refine.ls_R_factor_R_free 0.2360 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2147 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.40 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.21 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 904 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1061 _refine_hist.d_res_high 1.58 _refine_hist.d_res_low 38.98 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 ? 1035 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.657 ? 1596 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 32.458 ? 502 ? f_dihedral_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.076 ? 179 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.015 ? 45 ? f_plane_restr ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.58 1.62 . . 130 1175 100.00 . . . . 0.3277 . . . . . . . . . . . . . . . 0.3451 'X-RAY DIFFRACTION' 1.62 1.67 . . 135 1214 100.00 . . . . 0.2932 . . . . . . . . . . . . . . . 0.3030 'X-RAY DIFFRACTION' 1.67 1.72 . . 133 1188 100.00 . . . . 0.2677 . . . . . . . . . . . . . . . 0.2973 'X-RAY DIFFRACTION' 1.72 1.79 . . 130 1178 100.00 . . . . 0.2866 . . . . . . . . . . . . . . . 0.3086 'X-RAY DIFFRACTION' 1.79 1.86 . . 134 1199 100.00 . . . . 0.2905 . . . . . . . . . . . . . . . 0.4122 'X-RAY DIFFRACTION' 1.86 1.94 . . 134 1202 100.00 . . . . 0.2906 . . . . . . . . . . . . . . . 0.3349 'X-RAY DIFFRACTION' 1.94 2.04 . . 133 1204 100.00 . . . . 0.2833 . . . . . . . . . . . . . . . 0.2910 'X-RAY DIFFRACTION' 2.04 2.17 . . 136 1224 100.00 . . . . 0.2836 . . . . . . . . . . . . . . . 0.3388 'X-RAY DIFFRACTION' 2.17 2.34 . . 134 1218 100.00 . . . . 0.2721 . . . . . . . . . . . . . . . 0.3083 'X-RAY DIFFRACTION' 2.34 2.58 . . 135 1223 100.00 . . . . 0.2685 . . . . . . . . . . . . . . . 0.2972 'X-RAY DIFFRACTION' 2.58 2.95 . . 139 1250 100.00 . . . . 0.2511 . . . . . . . . . . . . . . . 0.2781 'X-RAY DIFFRACTION' 2.95 3.71 . . 141 1265 100.00 . . . . 0.1721 . . . . . . . . . . . . . . . 0.1831 'X-RAY DIFFRACTION' 3.72 38.98 . . 154 1379 100.00 . . . . 0.1691 . . . . . . . . . . . . . . . 0.1840 # _struct.entry_id 9URU _struct.title 'Crystal structure of Ade1304 DNA aptamer (1304b9) bound to adenosine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9URU _struct_keywords.text 'DNA aptamer, adenosine, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? J N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9URU _struct_ref.pdbx_db_accession 9URU _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9URU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 44 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9URU _struct_ref_seq.db_align_beg -2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -2 _struct_ref_seq.pdbx_auth_seq_align_end 41 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5680 ? 1 MORE -217 ? 1 'SSA (A^2)' 29270 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 11_555 -x+y,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 OP1 ? ? ? 1_555 D CA . CA ? ? A DG -1 A CA 103 1_545 ? ? ? ? ? ? ? 2.597 ? ? metalc2 metalc ? ? A DT 3 OP1 ? ? ? 1_555 I NA . NA ? ? A DT 0 A NA 108 1_545 ? ? ? ? ? ? ? 2.416 ? ? metalc3 metalc ? ? A DA 7 OP2 ? ? ? 1_555 C CA . CA ? ? A DA 4 A CA 102 8_555 ? ? ? ? ? ? ? 2.202 ? ? metalc4 metalc ? ? A DA 7 OP1 ? ? ? 1_555 E CA . CA ? ? A DA 4 A CA 104 8_555 ? ? ? ? ? ? ? 2.372 ? ? metalc5 metalc ? ? A DC 10 O2 ? ? ? 1_555 E CA . CA ? ? A DC 7 A CA 104 1_555 ? ? ? ? ? ? ? 2.287 ? ? metalc6 metalc ? ? A DG 11 O6 ? ? ? 1_555 E CA . CA ? ? A DG 8 A CA 104 1_555 ? ? ? ? ? ? ? 2.291 ? ? metalc7 metalc ? ? A DT 22 OP2 ? ? ? 1_555 D CA . CA ? ? A DT 19 A CA 103 1_555 ? ? ? ? ? ? ? 2.541 ? ? metalc8 metalc ? ? A DT 23 OP2 ? ? ? 1_555 D CA . CA ? ? A DT 20 A CA 103 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc9 metalc ? ? A DG 24 O6 ? ? ? 1_555 I NA . NA ? ? A DG 21 A NA 108 1_555 ? ? ? ? ? ? ? 2.056 ? ? metalc10 metalc ? ? A DG 32 OP1 ? ? ? 1_555 C CA . CA ? ? A DG 29 A CA 102 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc11 metalc ? ? A DG 32 OP2 ? ? ? 1_555 E CA . CA ? ? A DG 29 A CA 104 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc12 metalc ? ? A DA 35 OP2 ? ? ? 1_555 F NA . NA ? ? A DA 32 A NA 105 1_555 ? ? ? ? ? ? ? 2.097 ? ? metalc13 metalc ? ? A DA 35 OP2 ? ? ? 1_555 F NA . NA ? ? A DA 32 A NA 105 4_555 ? ? ? ? ? ? ? 2.097 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 223 8_555 ? ? ? ? ? ? ? 2.610 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 281 1_555 ? ? ? ? ? ? ? 2.298 ? ? metalc16 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 301 8_555 ? ? ? ? ? ? ? 2.505 ? ? metalc17 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 310 8_555 ? ? ? ? ? ? ? 2.298 ? ? metalc18 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 315 1_555 ? ? ? ? ? ? ? 2.261 ? ? metalc19 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 232 1_565 ? ? ? ? ? ? ? 2.194 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 246 1_555 ? ? ? ? ? ? ? 3.037 ? ? metalc21 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 273 1_565 ? ? ? ? ? ? ? 2.115 ? ? metalc22 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 292 1_555 ? ? ? ? ? ? ? 2.338 ? ? metalc23 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 307 1_555 ? ? ? ? ? ? ? 2.271 ? ? metalc24 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 105 A HOH 271 1_555 ? ? ? ? ? ? ? 3.060 ? ? metalc25 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 105 A HOH 271 4_555 ? ? ? ? ? ? ? 3.060 ? ? metalc26 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 105 A HOH 294 1_555 ? ? ? ? ? ? ? 2.419 ? ? metalc27 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 105 A HOH 294 4_555 ? ? ? ? ? ? ? 2.419 ? ? metalc28 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 105 A HOH 304 1_555 ? ? ? ? ? ? ? 2.024 ? ? metalc29 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 105 A HOH 304 4_555 ? ? ? ? ? ? ? 2.024 ? ? metalc30 metalc ? ? G NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 106 A HOH 230 1_545 ? ? ? ? ? ? ? 2.120 ? ? metalc31 metalc ? ? G NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 106 A HOH 302 4_545 ? ? ? ? ? ? ? 2.312 ? ? metalc32 metalc ? ? G NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 106 A HOH 305 4_545 ? ? ? ? ? ? ? 2.242 ? ? metalc33 metalc ? ? G NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 106 A HOH 328 4_555 ? ? ? ? ? ? ? 2.170 ? ? metalc34 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 107 A HOH 235 1_555 ? ? ? ? ? ? ? 2.514 ? ? metalc35 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 107 A HOH 287 1_545 ? ? ? ? ? ? ? 2.527 ? ? metalc36 metalc ? ? I NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 108 A HOH 205 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc37 metalc ? ? I NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 108 A HOH 245 1_555 ? ? ? ? ? ? ? 2.343 ? ? metalc38 metalc ? ? I NA . NA ? ? ? 1_555 J HOH . O ? ? A NA 108 A HOH 254 1_565 ? ? ? ? ? ? ? 1.903 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 43 N3 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 43 O2 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 43 N4 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 42 N1 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 42 N6 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 41 N3 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 41 O4 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 40 N1 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 40 O6 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 40 N2 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 39 N3 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 39 O2 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 39 N4 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 38 N3 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 38 O4 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 37 N1 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 37 O6 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 37 N2 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 36 N3 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 36 O4 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 32 N7 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 32 O6 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog23 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DG 31 N3 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A DA 13 N7 ? ? ? 1_555 A DG 31 N2 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? A DA 13 N1 ? ? ? 1_555 A DT 33 N3 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DT 33 O4 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DC 16 N3 ? ? A DG 11 A DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog28 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DT 30 O2 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A DG 14 O6 ? ? ? 1_555 A DT 30 N3 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DA 29 N1 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DA 29 N6 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DA 28 N1 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 17 O4 ? ? ? 1_555 A DA 28 N6 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 18 N3 ? ? ? 1_555 A DA 27 N1 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 18 O4 ? ? ? 1_555 A DA 27 N6 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 19 N1 ? ? ? 1_555 A DT 26 N3 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 19 N6 ? ? ? 1_555 A DT 26 O4 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DC 25 N3 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DC 25 O2 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 20 O6 ? ? ? 1_555 A DC 25 N4 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 32 N2 ? ? ? 1_555 A DA 35 N7 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A DG 32 N3 ? ? ? 1_555 A DA 35 N6 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 OP2 ? A DT 22 ? A DT 19 ? 1_555 89.9 ? 2 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 OP2 ? A DT 23 ? A DT 20 ? 1_555 87.5 ? 3 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 OP2 ? A DT 23 ? A DT 20 ? 1_555 2.9 ? 4 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 232 ? 1_565 87.5 ? 5 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 232 ? 1_565 3.1 ? 6 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 232 ? 1_565 3.5 ? 7 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 246 ? 1_555 88.7 ? 8 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 246 ? 1_555 2.5 ? 9 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 246 ? 1_555 4.0 ? 10 O ? J HOH . ? A HOH 232 ? 1_565 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 246 ? 1_555 1.2 ? 11 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 273 ? 1_565 87.5 ? 12 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 273 ? 1_565 2.5 ? 13 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 273 ? 1_565 2.3 ? 14 O ? J HOH . ? A HOH 232 ? 1_565 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 273 ? 1_565 1.3 ? 15 O ? J HOH . ? A HOH 246 ? 1_555 CA ? D CA . ? A CA 103 ? 1_545 O ? J HOH . ? A HOH 273 ? 1_565 2.0 ? 16 OP1 ? A DT 3 ? A DT 0 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O6 ? A DG 24 ? A DG 21 ? 1_555 105.3 ? 17 OP1 ? A DT 3 ? A DT 0 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 205 ? 1_555 105.2 ? 18 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 205 ? 1_555 2.4 ? 19 OP1 ? A DT 3 ? A DT 0 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 245 ? 1_555 105.9 ? 20 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 245 ? 1_555 1.8 ? 21 O ? J HOH . ? A HOH 205 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 245 ? 1_555 4.1 ? 22 OP1 ? A DT 3 ? A DT 0 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 254 ? 1_565 104.3 ? 23 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 254 ? 1_565 1.1 ? 24 O ? J HOH . ? A HOH 205 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 254 ? 1_565 3.0 ? 25 O ? J HOH . ? A HOH 245 ? 1_555 NA ? I NA . ? A NA 108 ? 1_545 O ? J HOH . ? A HOH 254 ? 1_565 2.0 ? 26 OP2 ? A DA 7 ? A DA 4 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 OP1 ? A DG 32 ? A DG 29 ? 1_555 61.4 ? 27 OP2 ? A DA 7 ? A DA 4 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 223 ? 8_555 63.5 ? 28 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 223 ? 8_555 4.0 ? 29 OP2 ? A DA 7 ? A DA 4 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 281 ? 1_555 70.8 ? 30 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 281 ? 1_555 9.5 ? 31 O ? J HOH . ? A HOH 223 ? 8_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 281 ? 1_555 7.6 ? 32 OP2 ? A DA 7 ? A DA 4 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 301 ? 8_555 62.6 ? 33 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 301 ? 8_555 8.1 ? 34 O ? J HOH . ? A HOH 223 ? 8_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 301 ? 8_555 4.8 ? 35 O ? J HOH . ? A HOH 281 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 301 ? 8_555 10.8 ? 36 OP2 ? A DA 7 ? A DA 4 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 310 ? 8_555 69.7 ? 37 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 310 ? 8_555 14.0 ? 38 O ? J HOH . ? A HOH 223 ? 8_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 310 ? 8_555 10.0 ? 39 O ? J HOH . ? A HOH 281 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 310 ? 8_555 10.4 ? 40 O ? J HOH . ? A HOH 301 ? 8_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 310 ? 8_555 7.7 ? 41 OP2 ? A DA 7 ? A DA 4 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 315 ? 1_555 68.5 ? 42 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 315 ? 1_555 9.0 ? 43 O ? J HOH . ? A HOH 223 ? 8_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 315 ? 1_555 5.4 ? 44 O ? J HOH . ? A HOH 281 ? 1_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 315 ? 1_555 5.0 ? 45 O ? J HOH . ? A HOH 301 ? 8_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 315 ? 1_555 6.4 ? 46 O ? J HOH . ? A HOH 310 ? 8_555 CA ? C CA . ? A CA 102 ? 8_555 O ? J HOH . ? A HOH 315 ? 1_555 6.0 ? 47 OP1 ? A DA 7 ? A DA 4 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O2 ? A DC 10 ? A DC 7 ? 1_555 80.8 ? 48 OP1 ? A DA 7 ? A DA 4 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O6 ? A DG 11 ? A DG 8 ? 1_555 73.3 ? 49 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O6 ? A DG 11 ? A DG 8 ? 1_555 7.7 ? 50 OP1 ? A DA 7 ? A DA 4 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 OP2 ? A DG 32 ? A DG 29 ? 1_555 75.4 ? 51 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 OP2 ? A DG 32 ? A DG 29 ? 1_555 11.7 ? 52 O6 ? A DG 11 ? A DG 8 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 OP2 ? A DG 32 ? A DG 29 ? 1_555 8.8 ? 53 OP1 ? A DA 7 ? A DA 4 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 292 ? 1_555 81.5 ? 54 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 292 ? 1_555 3.6 ? 55 O6 ? A DG 11 ? A DG 8 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 292 ? 1_555 8.4 ? 56 OP2 ? A DG 32 ? A DG 29 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 292 ? 1_555 9.2 ? 57 OP1 ? A DA 7 ? A DA 4 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 307 ? 1_555 75.8 ? 58 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 307 ? 1_555 10.5 ? 59 O6 ? A DG 11 ? A DG 8 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 307 ? 1_555 7.9 ? 60 OP2 ? A DG 32 ? A DG 29 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 307 ? 1_555 1.1 ? 61 O ? J HOH . ? A HOH 292 ? 1_555 CA ? E CA . ? A CA 104 ? 8_555 O ? J HOH . ? A HOH 307 ? 1_555 8.1 ? 62 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP2 ? A DA 35 ? A DA 32 ? 1_555 0.0 ? 63 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 271 ? 1_555 68.8 ? 64 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 271 ? 1_555 68.8 ? 65 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 271 ? 4_555 80.9 ? 66 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 271 ? 4_555 80.9 ? 67 O ? J HOH . ? A HOH 271 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 271 ? 4_555 129.5 ? 68 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 1_555 83.7 ? 69 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 1_555 83.7 ? 70 O ? J HOH . ? A HOH 271 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 1_555 128.3 ? 71 O ? J HOH . ? A HOH 271 ? 4_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 1_555 84.8 ? 72 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 4_555 150.1 ? 73 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 4_555 150.1 ? 74 O ? J HOH . ? A HOH 271 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 4_555 84.8 ? 75 O ? J HOH . ? A HOH 271 ? 4_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 4_555 128.3 ? 76 O ? J HOH . ? A HOH 294 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 294 ? 4_555 103.2 ? 77 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 1_555 99.8 ? 78 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 1_555 99.8 ? 79 O ? J HOH . ? A HOH 271 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 1_555 66.4 ? 80 O ? J HOH . ? A HOH 271 ? 4_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 1_555 161.5 ? 81 O ? J HOH . ? A HOH 294 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 1_555 76.9 ? 82 O ? J HOH . ? A HOH 294 ? 4_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 1_555 55.1 ? 83 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 4_555 127.9 ? 84 OP2 ? A DA 35 ? A DA 32 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 4_555 127.9 ? 85 O ? J HOH . ? A HOH 271 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 4_555 161.5 ? 86 O ? J HOH . ? A HOH 271 ? 4_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 4_555 66.4 ? 87 O ? J HOH . ? A HOH 294 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 4_555 55.1 ? 88 O ? J HOH . ? A HOH 294 ? 4_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 4_555 76.9 ? 89 O ? J HOH . ? A HOH 304 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? J HOH . ? A HOH 304 ? 4_555 99.9 ? 90 O ? J HOH . ? A HOH 230 ? 1_545 NA ? G NA . ? A NA 106 ? 1_555 O ? J HOH . ? A HOH 302 ? 4_545 86.7 ? 91 O ? J HOH . ? A HOH 230 ? 1_545 NA ? G NA . ? A NA 106 ? 1_555 O ? J HOH . ? A HOH 305 ? 4_545 165.1 ? 92 O ? J HOH . ? A HOH 302 ? 4_545 NA ? G NA . ? A NA 106 ? 1_555 O ? J HOH . ? A HOH 305 ? 4_545 81.6 ? 93 O ? J HOH . ? A HOH 230 ? 1_545 NA ? G NA . ? A NA 106 ? 1_555 O ? J HOH . ? A HOH 328 ? 4_555 106.3 ? 94 O ? J HOH . ? A HOH 302 ? 4_545 NA ? G NA . ? A NA 106 ? 1_555 O ? J HOH . ? A HOH 328 ? 4_555 161.0 ? 95 O ? J HOH . ? A HOH 305 ? 4_545 NA ? G NA . ? A NA 106 ? 1_555 O ? J HOH . ? A HOH 328 ? 4_555 83.1 ? 96 O ? J HOH . ? A HOH 235 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O ? J HOH . ? A HOH 287 ? 1_545 62.7 ? # _pdbx_entry_details.entry_id 9URU _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H1 A DG 21 ? ? O A HOH 205 ? ? 1.37 2 1 NA A NA 108 ? ? O A HOH 293 ? ? 1.54 3 1 O A HOH 323 ? ? O A HOH 326 ? ? 1.66 4 1 O4 A DT 23 ? ? O A HOH 201 ? ? 1.68 5 1 O A HOH 295 ? ? O A HOH 313 ? ? 1.69 6 1 OP1 A DC 5 ? ? O A HOH 202 ? ? 1.71 7 1 OP2 A DC 22 ? ? O A HOH 203 ? ? 1.96 8 1 O4 A DT 15 ? ? O A HOH 204 ? ? 2.00 9 1 O A HOH 325 ? ? O A HOH 327 ? ? 2.05 10 1 O A HOH 259 ? ? O A HOH 326 ? ? 2.08 11 1 O A HOH 245 ? ? O A HOH 293 ? ? 2.08 12 1 N1 A DG 21 ? ? O A HOH 205 ? ? 2.12 13 1 "O3'" A DG 21 ? ? O A HOH 203 ? ? 2.16 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 202 ? ? 1_555 O A HOH 295 ? ? 8_555 1.77 2 1 O A HOH 263 ? ? 1_555 O A HOH 324 ? ? 7_554 1.90 3 1 O A HOH 246 ? ? 1_555 O A HOH 286 ? ? 1_565 1.96 4 1 O A HOH 210 ? ? 1_555 O A HOH 214 ? ? 10_654 2.03 5 1 O A HOH 294 ? ? 1_555 O A HOH 304 ? ? 4_555 2.08 6 1 O A HOH 246 ? ? 1_555 O A HOH 273 ? ? 1_565 2.13 7 1 O A HOH 312 ? ? 1_555 O A HOH 318 ? ? 10_554 2.17 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DT -2 ? ? "C3'" A DT -2 ? ? 1.379 1.419 -0.040 0.006 N 2 1 "O3'" A DG -1 ? ? "C3'" A DG -1 ? ? 1.358 1.419 -0.061 0.006 N 3 1 "O3'" A DG 9 ? ? "C3'" A DG 9 ? ? 1.382 1.419 -0.037 0.006 N 4 1 "O3'" A DT 19 ? ? "C3'" A DT 19 ? ? 1.370 1.419 -0.049 0.006 N 5 1 "O3'" A DC 22 ? ? "C3'" A DC 22 ? ? 1.377 1.419 -0.042 0.006 N 6 1 N9 A DA 25 ? ? C4 A DA 25 ? ? 1.338 1.374 -0.036 0.006 N 7 1 "O3'" A DT 33 ? ? "C3'" A DT 33 ? ? 1.381 1.419 -0.038 0.006 N 8 1 "O3'" A DC 36 ? ? "C3'" A DC 36 ? ? 1.383 1.419 -0.036 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.16 108.30 2.86 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 112.17 108.30 3.87 0.30 N 3 1 "O5'" A DG 3 ? ? P A DG 3 ? ? OP1 A DG 3 ? ? 99.02 105.70 -6.68 0.90 N 4 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 103.74 108.00 -4.26 0.70 N 5 1 "O3'" A DG 3 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 118.54 110.50 8.04 1.10 Y 6 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 111.27 108.30 2.97 0.30 N 7 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.27 108.30 1.97 0.30 N 8 1 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.19 108.30 1.89 0.30 N 9 1 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.19 108.30 1.89 0.30 N 10 1 "O4'" A DG 28 ? ? "C1'" A DG 28 ? ? N9 A DG 28 ? ? 111.44 108.30 3.14 0.30 N 11 1 N3 A DT 30 ? ? C4 A DT 30 ? ? O4 A DT 30 ? ? 123.59 119.90 3.69 0.60 N 12 1 "O4'" A DA 32 ? ? "C1'" A DA 32 ? ? N9 A DA 32 ? ? 110.75 108.30 2.45 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A NA 105 ? F NA . 2 1 A HOH 206 ? J HOH . 3 1 A HOH 212 ? J HOH . 4 1 A HOH 261 ? J HOH . 5 1 A HOH 319 ? J HOH . 6 1 A HOH 328 ? J HOH . # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 14.1563 -1.7744 -10.4379 0.3131 ? -0.0057 ? 0.0471 ? 0.2858 ? 0.0403 ? 0.3352 ? 0.3433 ? -1.4235 ? 0.4965 ? 6.5661 ? 0.2959 ? 0.8879 ? 0.0285 ? 0.2460 ? 0.0514 ? 0.1997 ? -0.1655 ? -0.2624 ? 0.0696 ? 0.0135 ? 0.1558 ? 2 'X-RAY DIFFRACTION' ? refined 2.2519 20.2448 -11.2681 0.3227 ? 0.0398 ? 0.0136 ? 0.2419 ? 0.0452 ? 0.2828 ? 4.7265 ? -5.8155 ? 3.2333 ? 6.5505 ? -2.8207 ? 1.7315 ? -0.1227 ? 0.2167 ? 0.4440 ? 0.2363 ? -0.1513 ? -0.4324 ? -0.3122 ? -0.0832 ? 0.2127 ? 3 'X-RAY DIFFRACTION' ? refined 17.9457 -10.9367 -10.2883 0.3895 ? 0.0032 ? 0.0472 ? 0.2527 ? 0.0023 ? 0.1991 ? 6.0483 ? -2.7249 ? 2.1947 ? 7.4694 ? 0.6719 ? 3.7624 ? -0.0581 ? 0.0572 ? 0.2374 ? -0.1518 ? -0.1009 ? -0.5939 ? 0.1097 ? 0.1709 ? 0.1738 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid -2 through 12 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 13 through 32 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 33 through 41 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ADN "O5'" O N N 1 ADN "C5'" C N N 2 ADN "C4'" C N R 3 ADN "O4'" O N N 4 ADN "C3'" C N S 5 ADN "O3'" O N N 6 ADN "C2'" C N R 7 ADN "O2'" O N N 8 ADN "C1'" C N R 9 ADN N9 N Y N 10 ADN C8 C Y N 11 ADN N7 N Y N 12 ADN C5 C Y N 13 ADN C6 C Y N 14 ADN N6 N N N 15 ADN N1 N Y N 16 ADN C2 C Y N 17 ADN N3 N Y N 18 ADN C4 C Y N 19 ADN "HO5'" H N N 20 ADN "H5'1" H N N 21 ADN "H5'2" H N N 22 ADN "H4'" H N N 23 ADN "H3'" H N N 24 ADN "HO3'" H N N 25 ADN "H2'" H N N 26 ADN "HO2'" H N N 27 ADN "H1'" H N N 28 ADN H8 H N N 29 ADN HN61 H N N 30 ADN HN62 H N N 31 ADN H2 H N N 32 CA CA CA N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 NA NA NA N N 180 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ADN "O5'" "C5'" sing N N 1 ADN "O5'" "HO5'" sing N N 2 ADN "C5'" "C4'" sing N N 3 ADN "C5'" "H5'1" sing N N 4 ADN "C5'" "H5'2" sing N N 5 ADN "C4'" "O4'" sing N N 6 ADN "C4'" "C3'" sing N N 7 ADN "C4'" "H4'" sing N N 8 ADN "O4'" "C1'" sing N N 9 ADN "C3'" "O3'" sing N N 10 ADN "C3'" "C2'" sing N N 11 ADN "C3'" "H3'" sing N N 12 ADN "O3'" "HO3'" sing N N 13 ADN "C2'" "O2'" sing N N 14 ADN "C2'" "C1'" sing N N 15 ADN "C2'" "H2'" sing N N 16 ADN "O2'" "HO2'" sing N N 17 ADN "C1'" N9 sing N N 18 ADN "C1'" "H1'" sing N N 19 ADN N9 C8 sing Y N 20 ADN N9 C4 sing Y N 21 ADN C8 N7 doub Y N 22 ADN C8 H8 sing N N 23 ADN N7 C5 sing Y N 24 ADN C5 C6 sing Y N 25 ADN C5 C4 doub Y N 26 ADN C6 N6 sing N N 27 ADN C6 N1 doub Y N 28 ADN N6 HN61 sing N N 29 ADN N6 HN62 sing N N 30 ADN N1 C2 sing Y N 31 ADN C2 N3 doub Y N 32 ADN C2 H2 sing N N 33 ADN N3 C4 sing Y N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9URU 'double helix' 9URU 'b-form double helix' 9URU 'hairpin loop' 9URU 'bulge loop' 9URU 'mismatched base pair' 9URU 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 43 1_555 -0.319 -0.190 -0.075 -9.383 -12.236 0.197 1 A_DG-1:DC40_A A -1 ? A 40 ? 19 1 1 A DT 3 1_555 A DA 42 1_555 -0.182 -0.125 -0.072 -1.265 -5.953 -2.618 2 A_DT0:DA39_A A 0 ? A 39 ? 20 1 1 A DA 4 1_555 A DT 41 1_555 -0.076 -0.130 0.114 -1.969 -7.237 1.609 3 A_DA1:DT38_A A 1 ? A 38 ? 20 1 1 A DC 5 1_555 A DG 40 1_555 0.122 -0.190 -0.120 7.762 -1.800 -4.156 4 A_DC2:DG37_A A 2 ? A 37 ? 19 1 1 A DG 6 1_555 A DC 39 1_555 -0.403 -0.216 -0.083 3.767 -7.831 0.038 5 A_DG3:DC36_A A 3 ? A 36 ? 19 1 1 A DA 7 1_555 A DT 38 1_555 0.100 -0.129 0.352 15.863 -6.724 -0.625 6 A_DA4:DT35_A A 4 ? A 35 ? 20 1 1 A DC 8 1_555 A DG 37 1_555 0.271 -0.297 -0.152 14.575 -13.525 -0.258 7 A_DC5:DG34_A A 5 ? A 34 ? 19 1 1 A DA 9 1_555 A DT 36 1_555 0.228 0.004 -0.092 18.816 -16.477 -5.164 8 A_DA6:DT33_A A 6 ? A 33 ? 20 1 1 A DG 11 1_555 A DG 32 1_555 5.624 -0.459 -0.333 26.136 -18.929 -110.600 9 A_DG8:DG29_A A 8 ? A 29 ? 7 4 1 A DA 13 1_555 A DT 33 1_555 0.164 0.029 -0.110 21.311 31.601 3.973 10 A_DA10:DT30_A A 10 ? A 30 ? 20 1 1 A DG 14 1_555 A DT 30 1_555 -2.197 -0.474 -0.196 5.383 1.808 -5.656 11 A_DG11:DT27_A A 11 ? A 27 ? 28 1 1 A DG 15 1_555 A DA 29 1_555 -0.249 1.559 -0.173 11.903 -15.833 -19.779 12 A_DG12:DA26_A A 12 ? A 26 ? 8 1 1 A DT 17 1_555 A DA 28 1_555 -0.303 -0.232 0.270 -13.717 -16.871 2.500 13 A_DT14:DA25_A A 14 ? A 25 ? 20 1 1 A DT 18 1_555 A DA 27 1_555 -0.051 -0.145 -0.001 -13.973 -16.841 3.235 14 A_DT15:DA24_A A 15 ? A 24 ? 20 1 1 A DA 19 1_555 A DT 26 1_555 -0.605 0.063 -0.160 -7.528 -2.385 5.771 15 A_DA16:DT23_A A 16 ? A 23 ? 20 1 1 A DG 20 1_555 A DC 25 1_555 -0.379 -0.118 0.153 4.241 -1.823 1.458 16 A_DG17:DC22_A A 17 ? A 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 43 1_555 A DT 3 1_555 A DA 42 1_555 -0.492 -0.811 3.146 1.233 7.979 32.096 -2.679 1.059 2.847 14.153 -2.188 33.070 1 AA_DG-1DT0:DA39DC40_AA A -1 ? A 40 ? A 0 ? A 39 ? 1 A DT 3 1_555 A DA 42 1_555 A DA 4 1_555 A DT 41 1_555 0.713 -0.828 3.214 0.693 5.363 31.464 -2.445 -1.175 3.049 9.799 -1.266 31.914 2 AA_DT0DA1:DT38DA39_AA A 0 ? A 39 ? A 1 ? A 38 ? 1 A DA 4 1_555 A DT 41 1_555 A DC 5 1_555 A DG 40 1_555 -0.171 -0.144 3.158 2.780 3.709 29.017 -1.049 0.911 3.087 7.343 -5.504 29.377 3 AA_DA1DC2:DG37DT38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 A DC 5 1_555 A DG 40 1_555 A DG 6 1_555 A DC 39 1_555 0.263 1.267 3.444 1.631 1.297 41.872 1.628 -0.188 3.488 1.814 -2.281 41.922 4 AA_DC2DG3:DC36DG37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 A DG 6 1_555 A DC 39 1_555 A DA 7 1_555 A DT 38 1_555 0.192 0.124 3.038 -4.092 4.536 28.933 -0.650 -1.182 2.968 8.952 8.077 29.557 5 AA_DG3DA4:DT35DC36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 A DA 7 1_555 A DT 38 1_555 A DC 8 1_555 A DG 37 1_555 1.094 -1.139 3.307 3.427 -1.296 28.344 -2.001 -1.407 3.460 -2.632 -6.961 28.575 6 AA_DA4DC5:DG34DT35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 A DC 8 1_555 A DG 37 1_555 A DA 9 1_555 A DT 36 1_555 0.167 1.462 3.382 8.113 -1.084 42.339 2.101 0.600 3.321 -1.484 -11.108 43.088 7 AA_DC5DA6:DT33DG34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 A DA 9 1_555 A DT 36 1_555 A DG 11 1_555 A DG 32 1_555 1.293 5.050 3.037 14.019 -19.294 76.385 4.369 -0.707 2.092 -15.256 -11.085 79.476 8 AA_DA6DG8:DG29DT33_AA A 6 ? A 33 ? A 8 ? A 29 ? 1 A DA 13 1_555 A DT 33 1_555 A DG 14 1_555 A DT 30 1_555 3.872 1.717 3.122 25.452 13.636 51.081 0.831 -2.239 4.721 14.566 -27.186 58.197 9 AA_DA10DG11:DT27DT30_AA A 10 ? A 30 ? A 11 ? A 27 ? 1 A DG 14 1_555 A DT 30 1_555 A DG 15 1_555 A DA 29 1_555 -1.843 0.705 3.205 -2.240 3.559 40.676 0.617 2.392 3.345 5.103 3.212 40.884 10 AA_DG11DG12:DA26DT27_AA A 11 ? A 27 ? A 12 ? A 26 ? 1 A DG 15 1_555 A DA 29 1_555 A DT 17 1_555 A DA 28 1_555 -0.444 0.063 3.639 -5.989 -7.639 57.825 0.510 0.105 3.631 -7.839 6.146 58.564 11 AA_DG12DT14:DA25DA26_AA A 12 ? A 26 ? A 14 ? A 25 ? 1 A DT 17 1_555 A DA 28 1_555 A DT 18 1_555 A DA 27 1_555 -0.541 0.119 3.241 0.249 -0.895 33.845 0.346 0.969 3.233 -1.537 -0.428 33.858 12 AA_DT14DT15:DA24DA25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 A DT 18 1_555 A DA 27 1_555 A DA 19 1_555 A DT 26 1_555 0.631 1.466 3.181 -0.768 -3.926 40.448 2.525 -0.989 3.020 -5.662 1.107 40.638 13 AA_DT15DA16:DT23DA24_AA A 15 ? A 24 ? A 16 ? A 23 ? 1 A DA 19 1_555 A DT 26 1_555 A DG 20 1_555 A DC 25 1_555 0.061 -0.449 3.091 -5.188 4.213 28.032 -1.782 -1.206 2.935 8.544 10.523 28.802 14 AA_DA16DG17:DC22DT23_AA A 16 ? A 23 ? A 17 ? A 22 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details BA-SAD # _atom_sites.entry_id 9URU _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.017065 _atom_sites.fract_transf_matrix[1][2] 0.009852 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019705 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008213 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA H N NA O P # loop_ # loop_ #