data_9URV # _entry.id 9URV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9URV pdb_00009urv 10.2210/pdb9urv/pdb WWPDB D_1300058549 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-11-11 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9URV _pdbx_database_status.recvd_initial_deposition_date 2025-04-30 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 5 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Chen, X.' 1 0000-0002-4502-0633 'Luo, Y.' 2 0009-0006-3449-7088 'Ren, Y.' 3 0009-0006-0959-2008 'Huang, L.' 4 0000-0002-2121-365X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of adenosine and ATP-binding DNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chen, X.' 1 0000-0002-4502-0633 primary 'Luo, Y.' 2 0009-0006-3449-7088 primary 'Ren, Y.' 3 0009-0006-0959-2008 primary 'Huang, L.' 4 0000-0002-2121-365X # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (44-MER)' 13618.746 1 ? ? ? ? 2 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 5 water nat water 18.015 214 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DT)(DA)(DC)(DG)(DA)(DC)(DA)(DC)(DG)(DG)(DA)(DG)(DG)(DC)(DT)(DT)(DA)(DG) (DT)(DT)(DT)(DG)(DC)(DT)(DA)(DA)(DA)(DT)(DG)(DG)(DT)(DC)(DA)(DT)(DG)(DT)(DC)(DG) (DT)(DA)(DC)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGTACGACACGGAGGCTTAGTTTGCTAAATGGTCATGTCGTACA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ADENOSINE MONOPHOSPHATE' AMP 3 'CALCIUM ION' CA 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DC n 1 6 DG n 1 7 DA n 1 8 DC n 1 9 DA n 1 10 DC n 1 11 DG n 1 12 DG n 1 13 DA n 1 14 DG n 1 15 DG n 1 16 DC n 1 17 DT n 1 18 DT n 1 19 DA n 1 20 DG n 1 21 DT n 1 22 DT n 1 23 DT n 1 24 DG n 1 25 DC n 1 26 DT n 1 27 DA n 1 28 DA n 1 29 DA n 1 30 DT n 1 31 DG n 1 32 DG n 1 33 DT n 1 34 DC n 1 35 DA n 1 36 DT n 1 37 DG n 1 38 DT n 1 39 DC n 1 40 DG n 1 41 DT n 1 42 DA n 1 43 DC n 1 44 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 44 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 -2 -2 DT DT A . n A 1 2 DG 2 -1 -1 DG DG A . n A 1 3 DT 3 0 0 DT DT A . n A 1 4 DA 4 1 1 DA DA A . n A 1 5 DC 5 2 2 DC DC A . n A 1 6 DG 6 3 3 DG DG A . n A 1 7 DA 7 4 4 DA DA A . n A 1 8 DC 8 5 5 DC DC A . n A 1 9 DA 9 6 6 DA DA A . n A 1 10 DC 10 7 7 DC DC A . n A 1 11 DG 11 8 8 DG DG A . n A 1 12 DG 12 9 9 DG DG A . n A 1 13 DA 13 10 10 DA DA A . n A 1 14 DG 14 11 11 DG DG A . n A 1 15 DG 15 12 12 DG DG A . n A 1 16 DC 16 13 13 DC DC A . n A 1 17 DT 17 14 14 DT DT A . n A 1 18 DT 18 15 15 DT DT A . n A 1 19 DA 19 16 16 DA DA A . n A 1 20 DG 20 17 17 DG DG A . n A 1 21 DT 21 18 18 DT DT A . n A 1 22 DT 22 19 19 DT DT A . n A 1 23 DT 23 20 20 DT DT A . n A 1 24 DG 24 21 21 DG DG A . n A 1 25 DC 25 22 22 DC DC A . n A 1 26 DT 26 23 23 DT DT A . n A 1 27 DA 27 24 24 DA DA A . n A 1 28 DA 28 25 25 DA DA A . n A 1 29 DA 29 26 26 DA DA A . n A 1 30 DT 30 27 27 DT DT A . n A 1 31 DG 31 28 28 DG DG A . n A 1 32 DG 32 29 29 DG DG A . n A 1 33 DT 33 30 30 DT DT A . n A 1 34 DC 34 31 31 DC DC A . n A 1 35 DA 35 32 32 DA DA A . n A 1 36 DT 36 33 33 DT DT A . n A 1 37 DG 37 34 34 DG DG A . n A 1 38 DT 38 35 35 DT DT A . n A 1 39 DC 39 36 36 DC DC A . n A 1 40 DG 40 37 37 DG DG A . n A 1 41 DT 41 38 38 DT DT A . n A 1 42 DA 42 39 39 DA DA A . n A 1 43 DC 43 40 40 DC DC A . n A 1 44 DA 44 41 41 DA DA A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 AMP ? ? AMP ? ? 'SUBJECT OF INVESTIGATION' ? 2 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? 3 NA ? ? NA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP 1 101 101 AMP AMP A . C 3 CA 1 102 2 CA CA A . D 3 CA 1 103 5 CA CA A . E 3 CA 1 104 6 CA CA A . F 4 NA 1 105 1 NA NA A . G 4 NA 1 106 2 NA NA A . H 4 NA 1 107 3 NA NA A . I 5 HOH 1 201 936 HOH HOH A . I 5 HOH 2 202 135 HOH HOH A . I 5 HOH 3 203 452 HOH HOH A . I 5 HOH 4 204 205 HOH HOH A . I 5 HOH 5 205 96 HOH HOH A . I 5 HOH 6 206 77 HOH HOH A . I 5 HOH 7 207 703 HOH HOH A . I 5 HOH 8 208 104 HOH HOH A . I 5 HOH 9 209 838 HOH HOH A . I 5 HOH 10 210 92 HOH HOH A . I 5 HOH 11 211 1 HOH HOH A . I 5 HOH 12 212 143 HOH HOH A . I 5 HOH 13 213 89 HOH HOH A . I 5 HOH 14 214 626 HOH HOH A . I 5 HOH 15 215 8 HOH HOH A . I 5 HOH 16 216 590 HOH HOH A . I 5 HOH 17 217 33 HOH HOH A . I 5 HOH 18 218 155 HOH HOH A . I 5 HOH 19 219 362 HOH HOH A . I 5 HOH 20 220 310 HOH HOH A . I 5 HOH 21 221 294 HOH HOH A . I 5 HOH 22 222 411 HOH HOH A . I 5 HOH 23 223 128 HOH HOH A . I 5 HOH 24 224 72 HOH HOH A . I 5 HOH 25 225 828 HOH HOH A . I 5 HOH 26 226 230 HOH HOH A . I 5 HOH 27 227 61 HOH HOH A . I 5 HOH 28 228 103 HOH HOH A . I 5 HOH 29 229 137 HOH HOH A . I 5 HOH 30 230 874 HOH HOH A . I 5 HOH 31 231 107 HOH HOH A . I 5 HOH 32 232 4 HOH HOH A . I 5 HOH 33 233 25 HOH HOH A . I 5 HOH 34 234 17 HOH HOH A . I 5 HOH 35 235 580 HOH HOH A . I 5 HOH 36 236 459 HOH HOH A . I 5 HOH 37 237 141 HOH HOH A . I 5 HOH 38 238 851 HOH HOH A . I 5 HOH 39 239 157 HOH HOH A . I 5 HOH 40 240 152 HOH HOH A . I 5 HOH 41 241 267 HOH HOH A . I 5 HOH 42 242 46 HOH HOH A . I 5 HOH 43 243 132 HOH HOH A . I 5 HOH 44 244 150 HOH HOH A . I 5 HOH 45 245 101 HOH HOH A . I 5 HOH 46 246 15 HOH HOH A . I 5 HOH 47 247 36 HOH HOH A . I 5 HOH 48 248 27 HOH HOH A . I 5 HOH 49 249 648 HOH HOH A . I 5 HOH 50 250 26 HOH HOH A . I 5 HOH 51 251 612 HOH HOH A . I 5 HOH 52 252 616 HOH HOH A . I 5 HOH 53 253 533 HOH HOH A . I 5 HOH 54 254 94 HOH HOH A . I 5 HOH 55 255 243 HOH HOH A . I 5 HOH 56 256 16 HOH HOH A . I 5 HOH 57 257 80 HOH HOH A . I 5 HOH 58 258 700 HOH HOH A . I 5 HOH 59 259 18 HOH HOH A . I 5 HOH 60 260 853 HOH HOH A . I 5 HOH 61 261 380 HOH HOH A . I 5 HOH 62 262 52 HOH HOH A . I 5 HOH 63 263 87 HOH HOH A . I 5 HOH 64 264 372 HOH HOH A . I 5 HOH 65 265 42 HOH HOH A . I 5 HOH 66 266 5 HOH HOH A . I 5 HOH 67 267 51 HOH HOH A . I 5 HOH 68 268 248 HOH HOH A . I 5 HOH 69 269 142 HOH HOH A . I 5 HOH 70 270 67 HOH HOH A . I 5 HOH 71 271 116 HOH HOH A . I 5 HOH 72 272 66 HOH HOH A . I 5 HOH 73 273 830 HOH HOH A . I 5 HOH 74 274 215 HOH HOH A . I 5 HOH 75 275 661 HOH HOH A . I 5 HOH 76 276 21 HOH HOH A . I 5 HOH 77 277 510 HOH HOH A . I 5 HOH 78 278 182 HOH HOH A . I 5 HOH 79 279 751 HOH HOH A . I 5 HOH 80 280 184 HOH HOH A . I 5 HOH 81 281 47 HOH HOH A . I 5 HOH 82 282 100 HOH HOH A . I 5 HOH 83 283 824 HOH HOH A . I 5 HOH 84 284 83 HOH HOH A . I 5 HOH 85 285 139 HOH HOH A . I 5 HOH 86 286 546 HOH HOH A . I 5 HOH 87 287 897 HOH HOH A . I 5 HOH 88 288 576 HOH HOH A . I 5 HOH 89 289 840 HOH HOH A . I 5 HOH 90 290 916 HOH HOH A . I 5 HOH 91 291 44 HOH HOH A . I 5 HOH 92 292 43 HOH HOH A . I 5 HOH 93 293 22 HOH HOH A . I 5 HOH 94 294 81 HOH HOH A . I 5 HOH 95 295 64 HOH HOH A . I 5 HOH 96 296 699 HOH HOH A . I 5 HOH 97 297 251 HOH HOH A . I 5 HOH 98 298 167 HOH HOH A . I 5 HOH 99 299 154 HOH HOH A . I 5 HOH 100 300 334 HOH HOH A . I 5 HOH 101 301 53 HOH HOH A . I 5 HOH 102 302 203 HOH HOH A . I 5 HOH 103 303 71 HOH HOH A . I 5 HOH 104 304 625 HOH HOH A . I 5 HOH 105 305 283 HOH HOH A . I 5 HOH 106 306 583 HOH HOH A . I 5 HOH 107 307 31 HOH HOH A . I 5 HOH 108 308 694 HOH HOH A . I 5 HOH 109 309 279 HOH HOH A . I 5 HOH 110 310 943 HOH HOH A . I 5 HOH 111 311 19 HOH HOH A . I 5 HOH 112 312 204 HOH HOH A . I 5 HOH 113 313 35 HOH HOH A . I 5 HOH 114 314 228 HOH HOH A . I 5 HOH 115 315 60 HOH HOH A . I 5 HOH 116 316 45 HOH HOH A . I 5 HOH 117 317 97 HOH HOH A . I 5 HOH 118 318 41 HOH HOH A . I 5 HOH 119 319 7 HOH HOH A . I 5 HOH 120 320 24 HOH HOH A . I 5 HOH 121 321 68 HOH HOH A . I 5 HOH 122 322 225 HOH HOH A . I 5 HOH 123 323 73 HOH HOH A . I 5 HOH 124 324 177 HOH HOH A . I 5 HOH 125 325 891 HOH HOH A . I 5 HOH 126 326 159 HOH HOH A . I 5 HOH 127 327 880 HOH HOH A . I 5 HOH 128 328 329 HOH HOH A . I 5 HOH 129 329 134 HOH HOH A . I 5 HOH 130 330 212 HOH HOH A . I 5 HOH 131 331 69 HOH HOH A . I 5 HOH 132 332 11 HOH HOH A . I 5 HOH 133 333 266 HOH HOH A . I 5 HOH 134 334 633 HOH HOH A . I 5 HOH 135 335 50 HOH HOH A . I 5 HOH 136 336 86 HOH HOH A . I 5 HOH 137 337 168 HOH HOH A . I 5 HOH 138 338 229 HOH HOH A . I 5 HOH 139 339 239 HOH HOH A . I 5 HOH 140 340 163 HOH HOH A . I 5 HOH 141 341 192 HOH HOH A . I 5 HOH 142 342 62 HOH HOH A . I 5 HOH 143 343 85 HOH HOH A . I 5 HOH 144 344 490 HOH HOH A . I 5 HOH 145 345 921 HOH HOH A . I 5 HOH 146 346 117 HOH HOH A . I 5 HOH 147 347 454 HOH HOH A . I 5 HOH 148 348 693 HOH HOH A . I 5 HOH 149 349 131 HOH HOH A . I 5 HOH 150 350 861 HOH HOH A . I 5 HOH 151 351 32 HOH HOH A . I 5 HOH 152 352 872 HOH HOH A . I 5 HOH 153 353 13 HOH HOH A . I 5 HOH 154 354 332 HOH HOH A . I 5 HOH 155 355 695 HOH HOH A . I 5 HOH 156 356 209 HOH HOH A . I 5 HOH 157 357 839 HOH HOH A . I 5 HOH 158 358 147 HOH HOH A . I 5 HOH 159 359 870 HOH HOH A . I 5 HOH 160 360 945 HOH HOH A . I 5 HOH 161 361 253 HOH HOH A . I 5 HOH 162 362 3 HOH HOH A . I 5 HOH 163 363 660 HOH HOH A . I 5 HOH 164 364 275 HOH HOH A . I 5 HOH 165 365 124 HOH HOH A . I 5 HOH 166 366 213 HOH HOH A . I 5 HOH 167 367 865 HOH HOH A . I 5 HOH 168 368 208 HOH HOH A . I 5 HOH 169 369 672 HOH HOH A . I 5 HOH 170 370 698 HOH HOH A . I 5 HOH 171 371 277 HOH HOH A . I 5 HOH 172 372 265 HOH HOH A . I 5 HOH 173 373 889 HOH HOH A . I 5 HOH 174 374 148 HOH HOH A . I 5 HOH 175 375 809 HOH HOH A . I 5 HOH 176 376 844 HOH HOH A . I 5 HOH 177 377 217 HOH HOH A . I 5 HOH 178 378 258 HOH HOH A . I 5 HOH 179 379 20 HOH HOH A . I 5 HOH 180 380 956 HOH HOH A . I 5 HOH 181 381 335 HOH HOH A . I 5 HOH 182 382 206 HOH HOH A . I 5 HOH 183 383 856 HOH HOH A . I 5 HOH 184 384 30 HOH HOH A . I 5 HOH 185 385 210 HOH HOH A . I 5 HOH 186 386 37 HOH HOH A . I 5 HOH 187 387 462 HOH HOH A . I 5 HOH 188 388 683 HOH HOH A . I 5 HOH 189 389 49 HOH HOH A . I 5 HOH 190 390 898 HOH HOH A . I 5 HOH 191 391 907 HOH HOH A . I 5 HOH 192 392 457 HOH HOH A . I 5 HOH 193 393 145 HOH HOH A . I 5 HOH 194 394 187 HOH HOH A . I 5 HOH 195 395 444 HOH HOH A . I 5 HOH 196 396 599 HOH HOH A . I 5 HOH 197 397 378 HOH HOH A . I 5 HOH 198 398 218 HOH HOH A . I 5 HOH 199 399 262 HOH HOH A . I 5 HOH 200 400 123 HOH HOH A . I 5 HOH 201 401 171 HOH HOH A . I 5 HOH 202 402 28 HOH HOH A . I 5 HOH 203 403 467 HOH HOH A . I 5 HOH 204 404 318 HOH HOH A . I 5 HOH 205 405 38 HOH HOH A . I 5 HOH 206 406 236 HOH HOH A . I 5 HOH 207 407 119 HOH HOH A . I 5 HOH 208 408 6 HOH HOH A . I 5 HOH 209 409 125 HOH HOH A . I 5 HOH 210 410 201 HOH HOH A . I 5 HOH 211 411 12 HOH HOH A . I 5 HOH 212 412 198 HOH HOH A . I 5 HOH 213 413 366 HOH HOH A . I 5 HOH 214 414 834 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_reference_DOI _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.21.1_5286 ? 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . ? 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . ? 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . ? 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 94.782 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9URV _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.753 _cell.length_a_esd ? _cell.length_b 27.814 _cell.length_b_esd ? _cell.length_c 51.718 _cell.length_c_esd ? _cell.volume 117191.187 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9URV _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9URV _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M Calcium chloride dihydrate, 0.05 M HEPES sodium pH 7.8, 30% v/v Polyethylene glycol 400, 0.002 M Spermine tetrahydrochloride' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-03-24 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979183 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979183 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 13.65 _reflns.entry_id 9URV _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.59 _reflns.d_resolution_low 51.54 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 15775 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.3 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.300 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.056 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.991 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.59 _reflns_shell.d_res_low 1.63 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1137 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.572 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.339 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.176 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 21.72 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9URV _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.59 _refine.ls_d_res_low 51.54 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 15719 _refine.ls_number_reflns_R_free 718 _refine.ls_number_reflns_R_work 15001 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.68 _refine.ls_percent_reflns_R_free 4.57 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1869 _refine.ls_R_factor_R_free 0.2165 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1855 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.8399 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1702 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.59 _refine_hist.d_res_low 51.54 _refine_hist.number_atoms_solvent 214 _refine_hist.number_atoms_total 1147 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 904 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0240 ? 1039 ? f_bond_d ? ? ? 'X-RAY DIFFRACTION' ? 1.7244 ? 1603 ? f_angle_d ? ? ? 'X-RAY DIFFRACTION' ? 0.0932 ? 179 ? f_chiral_restr ? ? ? 'X-RAY DIFFRACTION' ? 0.0243 ? 45 ? f_plane_restr ? ? ? 'X-RAY DIFFRACTION' ? 33.5565 ? 489 ? f_dihedral_angle_d ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.59 1.71 . . 124 2933 97.05 . . . . 0.2395 . . . . . . . . . . . . . . . 0.2968 'X-RAY DIFFRACTION' 1.71 1.89 . . 147 2944 97.91 . . . . 0.2113 . . . . . . . . . . . . . . . 0.3015 'X-RAY DIFFRACTION' 1.89 2.16 . . 162 2983 99.02 . . . . 0.2181 . . . . . . . . . . . . . . . 0.2824 'X-RAY DIFFRACTION' 2.16 2.72 . . 149 3006 99.65 . . . . 0.2108 . . . . . . . . . . . . . . . 0.2286 'X-RAY DIFFRACTION' 2.72 51.54 . . 136 3135 99.76 . . . . 0.1499 . . . . . . . . . . . . . . . 0.1555 # _struct.entry_id 9URV _struct.title 'Crystal structure of Ade1304 DNA aptamer (1304b9) bound to AMP' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9URV _struct_keywords.text 'Adenosine/ATP DNA aptamer, AMP, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9URV _struct_ref.pdbx_db_accession 9URV _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9URV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 44 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9URV _struct_ref_seq.db_align_beg -2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -2 _struct_ref_seq.pdbx_auth_seq_align_end 41 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1310 ? 1 MORE -74 ? 1 'SSA (A^2)' 15290 ? 2 'ABSA (A^2)' 120 ? 2 MORE -8 ? 2 'SSA (A^2)' 7880 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H,I 2 1 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 OP2 ? ? ? 1_555 C CA . CA ? ? A DG -1 A CA 102 4_445 ? ? ? ? ? ? ? 2.271 ? ? metalc2 metalc ? ? A DG 2 OP1 ? ? ? 1_555 E CA . CA ? ? A DG -1 A CA 104 1_544 ? ? ? ? ? ? ? 2.402 ? ? metalc3 metalc ? ? A DA 9 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 6 A CA 103 2_555 ? ? ? ? ? ? ? 2.373 ? ? metalc4 metalc ? ? A DC 10 O2 ? ? ? 1_555 D CA . CA ? ? A DC 7 A CA 103 2_555 ? ? ? ? ? ? ? 2.468 ? ? metalc5 metalc ? ? A DC 16 OP2 ? ? ? 1_555 F NA . NA ? ? A DC 13 A NA 105 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc6 metalc ? ? A DT 22 OP2 ? ? ? 1_555 E CA . CA ? ? A DT 19 A CA 104 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc7 metalc ? ? A DT 23 OP1 ? ? ? 1_555 C CA . CA ? ? A DT 20 A CA 102 4_456 ? ? ? ? ? ? ? 2.299 ? ? metalc8 metalc ? ? A DT 23 OP2 ? ? ? 1_555 E CA . CA ? ? A DT 20 A CA 104 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc9 metalc ? ? A DG 24 O6 ? ? ? 1_555 F NA . NA ? ? A DG 21 A NA 105 4_456 ? ? ? ? ? ? ? 2.277 ? ? metalc10 metalc ? ? A DC 25 OP2 ? ? ? 1_555 C CA . CA ? ? A DC 22 A CA 102 1_555 ? ? ? ? ? ? ? 2.313 ? ? metalc11 metalc ? ? A DC 25 OP1 ? ? ? 1_555 E CA . CA ? ? A DC 22 A CA 104 4_446 ? ? ? ? ? ? ? 2.341 ? ? metalc12 metalc ? ? A DT 30 OP1 ? ? ? 1_555 G NA . NA ? ? A DT 27 A NA 106 1_555 ? ? ? ? ? ? ? 3.002 ? ? metalc13 metalc ? ? A DT 30 O2 ? ? ? 1_555 H NA . NA ? ? A DT 27 A NA 107 1_555 ? ? ? ? ? ? ? 2.864 ? ? metalc14 metalc ? ? A DG 32 OP1 ? ? ? 1_555 D CA . CA ? ? A DG 29 A CA 103 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc15 metalc ? ? A DT 33 O4 ? ? ? 1_555 H NA . NA ? ? A DT 30 A NA 107 1_555 ? ? ? ? ? ? ? 2.828 ? ? metalc16 metalc ? ? A DA 42 OP1 ? ? ? 1_555 G NA . NA ? ? A DA 39 A NA 106 2_545 ? ? ? ? ? ? ? 2.318 ? ? metalc17 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 235 4_446 ? ? ? ? ? ? ? 2.369 ? ? metalc18 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 355 1_555 ? ? ? ? ? ? ? 2.391 ? ? metalc19 metalc ? ? C CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 102 A HOH 370 4_446 ? ? ? ? ? ? ? 2.335 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 274 2_555 ? ? ? ? ? ? ? 2.395 ? ? metalc21 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 307 1_555 ? ? ? ? ? ? ? 2.558 ? ? metalc22 metalc ? ? D CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 103 A HOH 332 2_555 ? ? ? ? ? ? ? 2.347 ? ? metalc23 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 308 1_566 ? ? ? ? ? ? ? 2.297 ? ? metalc24 metalc ? ? E CA . CA ? ? ? 1_555 I HOH . O ? ? A CA 104 A HOH 348 1_566 ? ? ? ? ? ? ? 2.371 ? ? metalc25 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 240 1_545 ? ? ? ? ? ? ? 2.225 ? ? metalc26 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 246 4_455 ? ? ? ? ? ? ? 2.402 ? ? metalc27 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 342 4_446 ? ? ? ? ? ? ? 2.601 ? ? metalc28 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 105 A HOH 376 4_446 ? ? ? ? ? ? ? 2.527 ? ? metalc29 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 106 A HOH 358 1_555 ? ? ? ? ? ? ? 2.394 ? ? metalc30 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 106 A HOH 382 1_555 ? ? ? ? ? ? ? 2.264 ? ? metalc31 metalc ? ? H NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 107 A HOH 389 1_555 ? ? ? ? ? ? ? 2.841 ? ? hydrog1 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 43 N3 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 43 O2 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 43 N4 ? ? A DG -1 A DC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 42 N1 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 42 N6 ? ? A DT 0 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 41 N3 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 4 N6 ? ? ? 1_555 A DT 41 O4 ? ? A DA 1 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 40 N1 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 40 O6 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 40 N2 ? ? A DC 2 A DG 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 39 N3 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 39 O2 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 39 N4 ? ? A DG 3 A DC 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 38 N3 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 38 O4 ? ? A DA 4 A DT 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 37 N1 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 37 O6 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 37 N2 ? ? A DC 5 A DG 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 36 N3 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 36 O4 ? ? A DA 6 A DT 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 A DG 32 N7 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 A DG 32 O6 ? ? A DG 8 A DG 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog23 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DG 31 N3 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A DA 13 N7 ? ? ? 1_555 A DG 31 N2 ? ? A DA 10 A DG 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog25 hydrog ? ? A DA 13 N1 ? ? ? 1_555 A DT 33 N3 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N6 ? ? ? 1_555 A DT 33 O4 ? ? A DA 10 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DC 16 N3 ? ? A DG 11 A DC 13 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog28 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DT 30 O2 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A DG 14 O6 ? ? ? 1_555 A DT 30 N3 ? ? A DG 11 A DT 27 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog30 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DA 29 N1 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DA 29 N6 ? ? A DG 12 A DA 26 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A DT 17 N3 ? ? ? 1_555 A DA 28 N1 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DT 17 O4 ? ? ? 1_555 A DA 28 N6 ? ? A DT 14 A DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DT 18 N3 ? ? ? 1_555 A DA 27 N1 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 18 O4 ? ? ? 1_555 A DA 27 N6 ? ? A DT 15 A DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DA 19 N1 ? ? ? 1_555 A DT 26 N3 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 19 N6 ? ? ? 1_555 A DT 26 O4 ? ? A DA 16 A DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DC 25 N3 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DC 25 O2 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DG 20 O6 ? ? ? 1_555 A DC 25 N4 ? ? A DG 17 A DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DG 32 N2 ? ? ? 1_555 A DA 35 N7 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A DG 32 N3 ? ? ? 1_555 A DA 35 N6 ? ? A DG 29 A DA 32 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP1 ? A DT 23 ? A DT 20 ? 1_555 56.3 ? 2 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP2 ? A DC 25 ? A DC 22 ? 1_555 45.2 ? 3 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 OP2 ? A DC 25 ? A DC 22 ? 1_555 11.4 ? 4 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 235 ? 4_446 40.8 ? 5 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 235 ? 4_446 15.6 ? 6 OP2 ? A DC 25 ? A DC 22 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 235 ? 4_446 4.8 ? 7 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 355 ? 1_555 44.2 ? 8 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 355 ? 1_555 12.2 ? 9 OP2 ? A DC 25 ? A DC 22 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 355 ? 1_555 3.2 ? 10 O ? I HOH . ? A HOH 235 ? 4_446 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 355 ? 1_555 3.6 ? 11 OP2 ? A DG 2 ? A DG -1 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 370 ? 4_446 43.3 ? 12 OP1 ? A DT 23 ? A DT 20 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 370 ? 4_446 13.1 ? 13 OP2 ? A DC 25 ? A DC 22 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 370 ? 4_446 2.4 ? 14 O ? I HOH . ? A HOH 235 ? 4_446 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 370 ? 4_446 2.6 ? 15 O ? I HOH . ? A HOH 355 ? 1_555 CA ? C CA . ? A CA 102 ? 4_445 O ? I HOH . ? A HOH 370 ? 4_446 1.7 ? 16 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 OP2 ? A DT 22 ? A DT 19 ? 1_555 81.8 ? 17 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 OP2 ? A DT 23 ? A DT 20 ? 1_555 79.3 ? 18 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 OP2 ? A DT 23 ? A DT 20 ? 1_555 2.5 ? 19 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 OP1 ? A DC 25 ? A DC 22 ? 1_555 68.5 ? 20 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 OP1 ? A DC 25 ? A DC 22 ? 1_555 14.1 ? 21 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 OP1 ? A DC 25 ? A DC 22 ? 1_555 12.0 ? 22 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 308 ? 1_566 79.4 ? 23 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 308 ? 1_566 3.2 ? 24 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 308 ? 1_566 2.7 ? 25 OP1 ? A DC 25 ? A DC 22 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 308 ? 1_566 11.3 ? 26 OP1 ? A DG 2 ? A DG -1 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 348 ? 1_566 79.8 ? 27 OP2 ? A DT 22 ? A DT 19 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 348 ? 1_566 2.0 ? 28 OP2 ? A DT 23 ? A DT 20 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 348 ? 1_566 1.2 ? 29 OP1 ? A DC 25 ? A DC 22 ? 1_555 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 348 ? 1_566 12.1 ? 30 O ? I HOH . ? A HOH 308 ? 1_566 CA ? E CA . ? A CA 104 ? 1_544 O ? I HOH . ? A HOH 348 ? 1_566 1.7 ? 31 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O2 ? A DC 10 ? A DC 7 ? 1_555 82.6 ? 32 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 OP1 ? A DG 32 ? A DG 29 ? 1_555 71.8 ? 33 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 OP1 ? A DG 32 ? A DG 29 ? 1_555 67.3 ? 34 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 274 ? 2_555 81.1 ? 35 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 274 ? 2_555 70.8 ? 36 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 274 ? 2_555 9.8 ? 37 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 307 ? 1_555 72.7 ? 38 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 307 ? 1_555 87.8 ? 39 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 307 ? 1_555 20.5 ? 40 O ? I HOH . ? A HOH 274 ? 2_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 307 ? 1_555 19.7 ? 41 OP2 ? A DA 9 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 332 ? 2_555 81.7 ? 42 O2 ? A DC 10 ? A DC 7 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 332 ? 2_555 81.0 ? 43 OP1 ? A DG 32 ? A DG 29 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 332 ? 2_555 16.4 ? 44 O ? I HOH . ? A HOH 274 ? 2_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 332 ? 2_555 10.2 ? 45 O ? I HOH . ? A HOH 307 ? 1_555 CA ? D CA . ? A CA 103 ? 2_555 O ? I HOH . ? A HOH 332 ? 2_555 12.0 ? 46 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O6 ? A DG 24 ? A DG 21 ? 1_555 130.8 ? 47 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 240 ? 1_545 85.8 ? 48 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 240 ? 1_545 142.9 ? 49 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 246 ? 4_455 94.3 ? 50 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 246 ? 4_455 41.9 ? 51 O ? I HOH . ? A HOH 240 ? 1_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 246 ? 4_455 151.3 ? 52 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 342 ? 4_446 104.1 ? 53 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 342 ? 4_446 95.2 ? 54 O ? I HOH . ? A HOH 240 ? 1_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 342 ? 4_446 77.6 ? 55 O ? I HOH . ? A HOH 246 ? 4_455 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 342 ? 4_446 129.7 ? 56 OP2 ? A DC 16 ? A DC 13 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 376 ? 4_446 93.1 ? 57 O6 ? A DG 24 ? A DG 21 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 376 ? 4_446 93.6 ? 58 O ? I HOH . ? A HOH 240 ? 1_545 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 376 ? 4_446 76.8 ? 59 O ? I HOH . ? A HOH 246 ? 4_455 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 376 ? 4_446 74.5 ? 60 O ? I HOH . ? A HOH 342 ? 4_446 NA ? F NA . ? A NA 105 ? 1_555 O ? I HOH . ? A HOH 376 ? 4_446 147.9 ? 61 OP1 ? A DT 30 ? A DT 27 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 OP1 ? A DA 42 ? A DA 39 ? 1_555 57.4 ? 62 OP1 ? A DT 30 ? A DT 27 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O ? I HOH . ? A HOH 358 ? 1_555 69.4 ? 63 OP1 ? A DA 42 ? A DA 39 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O ? I HOH . ? A HOH 358 ? 1_555 39.6 ? 64 OP1 ? A DT 30 ? A DT 27 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O ? I HOH . ? A HOH 382 ? 1_555 81.4 ? 65 OP1 ? A DA 42 ? A DA 39 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O ? I HOH . ? A HOH 382 ? 1_555 55.1 ? 66 O ? I HOH . ? A HOH 358 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O ? I HOH . ? A HOH 382 ? 1_555 93.0 ? 67 O2 ? A DT 30 ? A DT 27 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O4 ? A DT 33 ? A DT 30 ? 1_555 84.5 ? 68 O2 ? A DT 30 ? A DT 27 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O ? I HOH . ? A HOH 389 ? 1_555 134.8 ? 69 O4 ? A DT 33 ? A DT 30 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 O ? I HOH . ? A HOH 389 ? 1_555 118.3 ? # _pdbx_entry_details.entry_id 9URV _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 300 ? ? O A HOH 392 ? ? 1.63 2 1 O A HOH 201 ? ? O A HOH 310 ? ? 1.75 3 1 OP1 A DG 3 ? ? O A HOH 201 ? ? 1.85 4 1 OP1 A DG 9 ? ? O A HOH 202 ? ? 1.86 5 1 O A HOH 249 ? ? O A HOH 363 ? ? 1.94 6 1 O A HOH 217 ? ? O A HOH 297 ? ? 2.00 7 1 OP2 A DC 36 ? ? O A HOH 203 ? ? 2.00 8 1 OP1 A DG 8 ? ? O A HOH 204 ? ? 2.00 9 1 "O3'" A DC 2 ? ? O A HOH 201 ? ? 2.00 10 1 O A HOH 388 ? ? O A HOH 409 ? ? 2.07 11 1 O A HOH 240 ? ? O A HOH 373 ? ? 2.09 12 1 O A HOH 215 ? ? O A HOH 304 ? ? 2.10 13 1 O A HOH 238 ? ? O A HOH 326 ? ? 2.12 14 1 O A HOH 215 ? ? O A HOH 362 ? ? 2.15 15 1 OP1 A DC 7 ? ? O A HOH 205 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 230 ? ? 1_555 O A HOH 274 ? ? 2_555 1.83 2 1 O A HOH 215 ? ? 1_555 O A HOH 403 ? ? 1_566 2.05 3 1 O A HOH 241 ? ? 1_555 O A HOH 372 ? ? 1_545 2.08 4 1 O A HOH 214 ? ? 1_555 O A HOH 261 ? ? 4_445 2.11 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DG 3 ? ? N7 A DG 3 ? ? 1.434 1.388 0.046 0.006 N 2 1 C6 A DA 4 ? ? N1 A DA 4 ? ? 1.295 1.351 -0.056 0.007 N 3 1 "C3'" A DA 6 ? ? "C2'" A DA 6 ? ? 1.601 1.518 0.083 0.012 N 4 1 C8 A DA 6 ? ? N9 A DA 6 ? ? 1.319 1.373 -0.054 0.008 N 5 1 N1 A DC 7 ? ? C6 A DC 7 ? ? 1.327 1.367 -0.040 0.006 N 6 1 C5 A DG 9 ? ? N7 A DG 9 ? ? 1.433 1.388 0.045 0.006 N 7 1 C5 A DT 15 ? ? C7 A DT 15 ? ? 1.443 1.496 -0.053 0.006 N 8 1 "O3'" A DT 20 ? ? "C3'" A DT 20 ? ? 1.371 1.419 -0.048 0.006 N 9 1 "O3'" A DA 24 ? ? "C3'" A DA 24 ? ? 1.346 1.419 -0.073 0.006 N 10 1 C6 A DA 25 ? ? N1 A DA 25 ? ? 1.298 1.351 -0.053 0.007 N 11 1 N9 A DA 25 ? ? C4 A DA 25 ? ? 1.328 1.374 -0.046 0.006 N 12 1 N7 A DG 28 ? ? C8 A DG 28 ? ? 1.359 1.305 0.054 0.006 N 13 1 "O3'" A DG 29 ? ? "C3'" A DG 29 ? ? 1.366 1.419 -0.053 0.006 N 14 1 P A DT 30 ? ? "O5'" A DT 30 ? ? 1.533 1.593 -0.060 0.010 N 15 1 N3 A DA 32 ? ? C4 A DA 32 ? ? 1.301 1.344 -0.043 0.006 N 16 1 C5 A DT 35 ? ? C7 A DT 35 ? ? 1.448 1.496 -0.048 0.006 N 17 1 "C1'" A DC 36 ? ? N1 A DC 36 ? ? 1.569 1.488 0.081 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 0 ? ? "C1'" A DT 0 ? ? N1 A DT 0 ? ? 110.96 108.30 2.66 0.30 N 2 1 N3 A DT 0 ? ? C4 A DT 0 ? ? O4 A DT 0 ? ? 123.56 119.90 3.66 0.60 N 3 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 97.34 102.40 -5.06 0.80 N 4 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.14 108.30 1.84 0.30 N 5 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.83 108.30 2.53 0.30 N 6 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 112.09 108.30 3.79 0.30 N 7 1 N3 A DT 23 ? ? C4 A DT 23 ? ? O4 A DT 23 ? ? 123.84 119.90 3.94 0.60 N 8 1 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.92 108.30 2.62 0.30 N 9 1 C2 A DA 25 ? ? N3 A DA 25 ? ? C4 A DA 25 ? ? 106.41 110.60 -4.19 0.50 N 10 1 "O4'" A DG 28 ? ? "C1'" A DG 28 ? ? N9 A DG 28 ? ? 110.13 108.30 1.83 0.30 N 11 1 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 111.49 108.30 3.19 0.30 N 12 1 "O4'" A DC 31 ? ? "C1'" A DC 31 ? ? N1 A DC 31 ? ? 113.04 108.30 4.74 0.30 N 13 1 "O4'" A DT 35 ? ? "C1'" A DT 35 ? ? N1 A DT 35 ? ? 110.32 108.30 2.02 0.30 N 14 1 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 110.49 108.30 2.19 0.30 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 378 ? I HOH . 2 1 A HOH 385 ? I HOH . 3 1 A HOH 407 ? I HOH . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -x,y,-z 3 x+1/2,y+1/2,z 4 -x+1/2,y+1/2,-z # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined -10.1444568461 -4.45754926982 -6.33216686166 0.153218184835 ? -0.0116348292309 ? 0.0225859862525 ? 0.115667809639 ? 0.0193282217278 ? 0.0745055454975 ? 0.627890554829 ? 0.491237287448 ? 0.938010914875 ? 2.10062494731 ? 2.9867010441 ? 4.36261936608 ? 0.0786970644227 ? -0.00565756990658 ? 0.0102283605559 ? 0.120413368421 ? 0.112529385154 ? -0.226796543139 ? 0.30275422171 ? -0.0318583707599 ? -0.156953013903 ? 2 'X-RAY DIFFRACTION' ? refined -12.1897343997 7.04331686252 15.4432201173 0.132315556636 ? 0.00507372562285 ? 0.0172244546678 ? 0.128944967712 ? 0.00174684904117 ? 0.0987865220735 ? 1.96612963263 ? -1.82390626391 ? -3.12056003747 ? 1.6895155284 ? 3.00156333839 ? 6.42568659109 ? -0.0780848678816 ? -0.149253921882 ? 0.06415296223 ? 0.230102846412 ? 0.166220389931 ? -0.0536413403839 ? 0.2911773738 ? 0.242341286509 ? -0.0936896307341 ? 3 'X-RAY DIFFRACTION' ? refined -9.51000554472 -10.9542258347 -14.2193716821 0.253308773246 ? 0.0257044227145 ? -0.0521038143999 ? 0.220081892562 ? -0.0297941106204 ? 0.10987663033 ? 4.48622417452 ? -2.63657145396 ? -2.98749533756 ? 8.47172585988 ? 5.68973334277 ? 5.74301999682 ? 0.267800746568 ? -0.176722789992 ? 0.128838499507 ? -0.497814651315 ? -0.286880195235 ? 0.0167999347447 ? -0.1625343055 ? -0.238828251111 ? 0.0138662066926 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 A ? A -2 ? A ? A 12 ? ? ;chain 'A' and (resid -2 through 12 ) ; 2 'X-RAY DIFFRACTION' 2 A ? A 13 ? A ? A 32 ? ? ;chain 'A' and (resid 13 through 32 ) ; 3 'X-RAY DIFFRACTION' 3 A ? A 33 ? A ? A 41 ? ? ;chain 'A' and (resid 33 through 41 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal AMP P P N N 1 AMP O1P O N N 2 AMP O2P O N N 3 AMP O3P O N N 4 AMP "O5'" O N N 5 AMP "C5'" C N N 6 AMP "C4'" C N R 7 AMP "O4'" O N N 8 AMP "C3'" C N S 9 AMP "O3'" O N N 10 AMP "C2'" C N R 11 AMP "O2'" O N N 12 AMP "C1'" C N R 13 AMP N9 N Y N 14 AMP C8 C Y N 15 AMP N7 N Y N 16 AMP C5 C Y N 17 AMP C6 C Y N 18 AMP N6 N N N 19 AMP N1 N Y N 20 AMP C2 C Y N 21 AMP N3 N Y N 22 AMP C4 C Y N 23 AMP HOP2 H N N 24 AMP HOP3 H N N 25 AMP "H5'1" H N N 26 AMP "H5'2" H N N 27 AMP "H4'" H N N 28 AMP "H3'" H N N 29 AMP "HO3'" H N N 30 AMP "H2'" H N N 31 AMP "HO2'" H N N 32 AMP "H1'" H N N 33 AMP H8 H N N 34 AMP HN61 H N N 35 AMP HN62 H N N 36 AMP H2 H N N 37 CA CA CA N N 38 DA OP3 O N N 39 DA P P N N 40 DA OP1 O N N 41 DA OP2 O N N 42 DA "O5'" O N N 43 DA "C5'" C N N 44 DA "C4'" C N R 45 DA "O4'" O N N 46 DA "C3'" C N S 47 DA "O3'" O N N 48 DA "C2'" C N N 49 DA "C1'" C N R 50 DA N9 N Y N 51 DA C8 C Y N 52 DA N7 N Y N 53 DA C5 C Y N 54 DA C6 C Y N 55 DA N6 N N N 56 DA N1 N Y N 57 DA C2 C Y N 58 DA N3 N Y N 59 DA C4 C Y N 60 DA HOP3 H N N 61 DA HOP2 H N N 62 DA "H5'" H N N 63 DA "H5''" H N N 64 DA "H4'" H N N 65 DA "H3'" H N N 66 DA "HO3'" H N N 67 DA "H2'" H N N 68 DA "H2''" H N N 69 DA "H1'" H N N 70 DA H8 H N N 71 DA H61 H N N 72 DA H62 H N N 73 DA H2 H N N 74 DC OP3 O N N 75 DC P P N N 76 DC OP1 O N N 77 DC OP2 O N N 78 DC "O5'" O N N 79 DC "C5'" C N N 80 DC "C4'" C N R 81 DC "O4'" O N N 82 DC "C3'" C N S 83 DC "O3'" O N N 84 DC "C2'" C N N 85 DC "C1'" C N R 86 DC N1 N N N 87 DC C2 C N N 88 DC O2 O N N 89 DC N3 N N N 90 DC C4 C N N 91 DC N4 N N N 92 DC C5 C N N 93 DC C6 C N N 94 DC HOP3 H N N 95 DC HOP2 H N N 96 DC "H5'" H N N 97 DC "H5''" H N N 98 DC "H4'" H N N 99 DC "H3'" H N N 100 DC "HO3'" H N N 101 DC "H2'" H N N 102 DC "H2''" H N N 103 DC "H1'" H N N 104 DC H41 H N N 105 DC H42 H N N 106 DC H5 H N N 107 DC H6 H N N 108 DG OP3 O N N 109 DG P P N N 110 DG OP1 O N N 111 DG OP2 O N N 112 DG "O5'" O N N 113 DG "C5'" C N N 114 DG "C4'" C N R 115 DG "O4'" O N N 116 DG "C3'" C N S 117 DG "O3'" O N N 118 DG "C2'" C N N 119 DG "C1'" C N R 120 DG N9 N Y N 121 DG C8 C Y N 122 DG N7 N Y N 123 DG C5 C Y N 124 DG C6 C N N 125 DG O6 O N N 126 DG N1 N N N 127 DG C2 C N N 128 DG N2 N N N 129 DG N3 N N N 130 DG C4 C Y N 131 DG HOP3 H N N 132 DG HOP2 H N N 133 DG "H5'" H N N 134 DG "H5''" H N N 135 DG "H4'" H N N 136 DG "H3'" H N N 137 DG "HO3'" H N N 138 DG "H2'" H N N 139 DG "H2''" H N N 140 DG "H1'" H N N 141 DG H8 H N N 142 DG H1 H N N 143 DG H21 H N N 144 DG H22 H N N 145 DT OP3 O N N 146 DT P P N N 147 DT OP1 O N N 148 DT OP2 O N N 149 DT "O5'" O N N 150 DT "C5'" C N N 151 DT "C4'" C N R 152 DT "O4'" O N N 153 DT "C3'" C N S 154 DT "O3'" O N N 155 DT "C2'" C N N 156 DT "C1'" C N R 157 DT N1 N N N 158 DT C2 C N N 159 DT O2 O N N 160 DT N3 N N N 161 DT C4 C N N 162 DT O4 O N N 163 DT C5 C N N 164 DT C7 C N N 165 DT C6 C N N 166 DT HOP3 H N N 167 DT HOP2 H N N 168 DT "H5'" H N N 169 DT "H5''" H N N 170 DT "H4'" H N N 171 DT "H3'" H N N 172 DT "HO3'" H N N 173 DT "H2'" H N N 174 DT "H2''" H N N 175 DT "H1'" H N N 176 DT H3 H N N 177 DT H71 H N N 178 DT H72 H N N 179 DT H73 H N N 180 DT H6 H N N 181 HOH O O N N 182 HOH H1 H N N 183 HOH H2 H N N 184 NA NA NA N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal AMP P O1P doub N N 1 AMP P O2P sing N N 2 AMP P O3P sing N N 3 AMP P "O5'" sing N N 4 AMP O2P HOP2 sing N N 5 AMP O3P HOP3 sing N N 6 AMP "O5'" "C5'" sing N N 7 AMP "C5'" "C4'" sing N N 8 AMP "C5'" "H5'1" sing N N 9 AMP "C5'" "H5'2" sing N N 10 AMP "C4'" "O4'" sing N N 11 AMP "C4'" "C3'" sing N N 12 AMP "C4'" "H4'" sing N N 13 AMP "O4'" "C1'" sing N N 14 AMP "C3'" "O3'" sing N N 15 AMP "C3'" "C2'" sing N N 16 AMP "C3'" "H3'" sing N N 17 AMP "O3'" "HO3'" sing N N 18 AMP "C2'" "O2'" sing N N 19 AMP "C2'" "C1'" sing N N 20 AMP "C2'" "H2'" sing N N 21 AMP "O2'" "HO2'" sing N N 22 AMP "C1'" N9 sing N N 23 AMP "C1'" "H1'" sing N N 24 AMP N9 C8 sing Y N 25 AMP N9 C4 sing Y N 26 AMP C8 N7 doub Y N 27 AMP C8 H8 sing N N 28 AMP N7 C5 sing Y N 29 AMP C5 C6 sing Y N 30 AMP C5 C4 doub Y N 31 AMP C6 N6 sing N N 32 AMP C6 N1 doub Y N 33 AMP N6 HN61 sing N N 34 AMP N6 HN62 sing N N 35 AMP N1 C2 sing Y N 36 AMP C2 N3 doub Y N 37 AMP C2 H2 sing N N 38 AMP N3 C4 sing Y N 39 DA OP3 P sing N N 40 DA OP3 HOP3 sing N N 41 DA P OP1 doub N N 42 DA P OP2 sing N N 43 DA P "O5'" sing N N 44 DA OP2 HOP2 sing N N 45 DA "O5'" "C5'" sing N N 46 DA "C5'" "C4'" sing N N 47 DA "C5'" "H5'" sing N N 48 DA "C5'" "H5''" sing N N 49 DA "C4'" "O4'" sing N N 50 DA "C4'" "C3'" sing N N 51 DA "C4'" "H4'" sing N N 52 DA "O4'" "C1'" sing N N 53 DA "C3'" "O3'" sing N N 54 DA "C3'" "C2'" sing N N 55 DA "C3'" "H3'" sing N N 56 DA "O3'" "HO3'" sing N N 57 DA "C2'" "C1'" sing N N 58 DA "C2'" "H2'" sing N N 59 DA "C2'" "H2''" sing N N 60 DA "C1'" N9 sing N N 61 DA "C1'" "H1'" sing N N 62 DA N9 C8 sing Y N 63 DA N9 C4 sing Y N 64 DA C8 N7 doub Y N 65 DA C8 H8 sing N N 66 DA N7 C5 sing Y N 67 DA C5 C6 sing Y N 68 DA C5 C4 doub Y N 69 DA C6 N6 sing N N 70 DA C6 N1 doub Y N 71 DA N6 H61 sing N N 72 DA N6 H62 sing N N 73 DA N1 C2 sing Y N 74 DA C2 N3 doub Y N 75 DA C2 H2 sing N N 76 DA N3 C4 sing Y N 77 DC OP3 P sing N N 78 DC OP3 HOP3 sing N N 79 DC P OP1 doub N N 80 DC P OP2 sing N N 81 DC P "O5'" sing N N 82 DC OP2 HOP2 sing N N 83 DC "O5'" "C5'" sing N N 84 DC "C5'" "C4'" sing N N 85 DC "C5'" "H5'" sing N N 86 DC "C5'" "H5''" sing N N 87 DC "C4'" "O4'" sing N N 88 DC "C4'" "C3'" sing N N 89 DC "C4'" "H4'" sing N N 90 DC "O4'" "C1'" sing N N 91 DC "C3'" "O3'" sing N N 92 DC "C3'" "C2'" sing N N 93 DC "C3'" "H3'" sing N N 94 DC "O3'" "HO3'" sing N N 95 DC "C2'" "C1'" sing N N 96 DC "C2'" "H2'" sing N N 97 DC "C2'" "H2''" sing N N 98 DC "C1'" N1 sing N N 99 DC "C1'" "H1'" sing N N 100 DC N1 C2 sing N N 101 DC N1 C6 sing N N 102 DC C2 O2 doub N N 103 DC C2 N3 sing N N 104 DC N3 C4 doub N N 105 DC C4 N4 sing N N 106 DC C4 C5 sing N N 107 DC N4 H41 sing N N 108 DC N4 H42 sing N N 109 DC C5 C6 doub N N 110 DC C5 H5 sing N N 111 DC C6 H6 sing N N 112 DG OP3 P sing N N 113 DG OP3 HOP3 sing N N 114 DG P OP1 doub N N 115 DG P OP2 sing N N 116 DG P "O5'" sing N N 117 DG OP2 HOP2 sing N N 118 DG "O5'" "C5'" sing N N 119 DG "C5'" "C4'" sing N N 120 DG "C5'" "H5'" sing N N 121 DG "C5'" "H5''" sing N N 122 DG "C4'" "O4'" sing N N 123 DG "C4'" "C3'" sing N N 124 DG "C4'" "H4'" sing N N 125 DG "O4'" "C1'" sing N N 126 DG "C3'" "O3'" sing N N 127 DG "C3'" "C2'" sing N N 128 DG "C3'" "H3'" sing N N 129 DG "O3'" "HO3'" sing N N 130 DG "C2'" "C1'" sing N N 131 DG "C2'" "H2'" sing N N 132 DG "C2'" "H2''" sing N N 133 DG "C1'" N9 sing N N 134 DG "C1'" "H1'" sing N N 135 DG N9 C8 sing Y N 136 DG N9 C4 sing Y N 137 DG C8 N7 doub Y N 138 DG C8 H8 sing N N 139 DG N7 C5 sing Y N 140 DG C5 C6 sing N N 141 DG C5 C4 doub Y N 142 DG C6 O6 doub N N 143 DG C6 N1 sing N N 144 DG N1 C2 sing N N 145 DG N1 H1 sing N N 146 DG C2 N2 sing N N 147 DG C2 N3 doub N N 148 DG N2 H21 sing N N 149 DG N2 H22 sing N N 150 DG N3 C4 sing N N 151 DT OP3 P sing N N 152 DT OP3 HOP3 sing N N 153 DT P OP1 doub N N 154 DT P OP2 sing N N 155 DT P "O5'" sing N N 156 DT OP2 HOP2 sing N N 157 DT "O5'" "C5'" sing N N 158 DT "C5'" "C4'" sing N N 159 DT "C5'" "H5'" sing N N 160 DT "C5'" "H5''" sing N N 161 DT "C4'" "O4'" sing N N 162 DT "C4'" "C3'" sing N N 163 DT "C4'" "H4'" sing N N 164 DT "O4'" "C1'" sing N N 165 DT "C3'" "O3'" sing N N 166 DT "C3'" "C2'" sing N N 167 DT "C3'" "H3'" sing N N 168 DT "O3'" "HO3'" sing N N 169 DT "C2'" "C1'" sing N N 170 DT "C2'" "H2'" sing N N 171 DT "C2'" "H2''" sing N N 172 DT "C1'" N1 sing N N 173 DT "C1'" "H1'" sing N N 174 DT N1 C2 sing N N 175 DT N1 C6 sing N N 176 DT C2 O2 doub N N 177 DT C2 N3 sing N N 178 DT N3 C4 sing N N 179 DT N3 H3 sing N N 180 DT C4 O4 doub N N 181 DT C4 C5 sing N N 182 DT C5 C7 sing N N 183 DT C5 C6 doub N N 184 DT C7 H71 sing N N 185 DT C7 H72 sing N N 186 DT C7 H73 sing N N 187 DT C6 H6 sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9URV 'double helix' 9URV 'b-form double helix' 9URV 'hairpin loop' 9URV 'bulge loop' 9URV 'mismatched base pair' 9URV 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 2 1_555 A DC 43 1_555 -0.248 -0.141 0.179 2.191 -10.802 -0.423 1 A_DG-1:DC40_A A -1 ? A 40 ? 19 1 1 A DT 3 1_555 A DA 42 1_555 -0.170 -0.132 -0.200 6.887 -8.928 -2.751 2 A_DT0:DA39_A A 0 ? A 39 ? 20 1 1 A DA 4 1_555 A DT 41 1_555 0.036 -0.114 0.090 -2.412 -9.547 4.094 3 A_DA1:DT38_A A 1 ? A 38 ? 20 1 1 A DC 5 1_555 A DG 40 1_555 0.176 -0.188 -0.077 1.905 -6.107 -2.239 4 A_DC2:DG37_A A 2 ? A 37 ? 19 1 1 A DG 6 1_555 A DC 39 1_555 0.037 -0.148 0.030 2.602 -11.244 -0.921 5 A_DG3:DC36_A A 3 ? A 36 ? 19 1 1 A DA 7 1_555 A DT 38 1_555 0.126 -0.183 0.109 2.172 -3.162 -0.230 6 A_DA4:DT35_A A 4 ? A 35 ? 20 1 1 A DC 8 1_555 A DG 37 1_555 0.140 -0.116 -0.203 12.181 0.409 1.598 7 A_DC5:DG34_A A 5 ? A 34 ? 19 1 1 A DA 9 1_555 A DT 36 1_555 0.200 -0.071 -0.035 19.505 -18.292 2.019 8 A_DA6:DT33_A A 6 ? A 33 ? 20 1 1 A DG 11 1_555 A DG 32 1_555 5.742 -0.738 0.020 37.776 -12.094 -100.205 9 A_DG8:DG29_A A 8 ? A 29 ? 7 4 1 A DA 13 1_555 A DT 33 1_555 0.122 0.009 -0.308 20.560 28.929 1.602 10 A_DA10:DT30_A A 10 ? A 30 ? 20 1 1 A DG 14 1_555 A DT 30 1_555 -2.140 -0.533 -0.256 7.613 2.586 -6.876 11 A_DG11:DT27_A A 11 ? A 27 ? 28 1 1 A DG 15 1_555 A DA 29 1_555 -0.186 1.469 -0.176 13.385 -16.394 -21.850 12 A_DG12:DA26_A A 12 ? A 26 ? 8 1 1 A DT 17 1_555 A DA 28 1_555 -0.234 -0.170 0.237 -13.056 -17.253 1.652 13 A_DT14:DA25_A A 14 ? A 25 ? 20 1 1 A DT 18 1_555 A DA 27 1_555 -0.049 -0.082 0.028 -13.403 -22.314 2.323 14 A_DT15:DA24_A A 15 ? A 24 ? 20 1 1 A DA 19 1_555 A DT 26 1_555 0.054 -0.144 -0.177 -8.917 1.472 -0.758 15 A_DA16:DT23_A A 16 ? A 23 ? 20 1 1 A DG 20 1_555 A DC 25 1_555 -0.118 -0.151 0.045 6.257 -0.988 -0.578 16 A_DG17:DC22_A A 17 ? A 22 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 2 1_555 A DC 43 1_555 A DT 3 1_555 A DA 42 1_555 -0.210 -0.639 3.259 4.249 9.719 29.354 -2.974 1.171 2.850 18.437 -8.060 31.172 1 AA_DG-1DT0:DA39DC40_AA A -1 ? A 40 ? A 0 ? A 39 ? 1 A DT 3 1_555 A DA 42 1_555 A DA 4 1_555 A DT 41 1_555 0.660 -1.141 3.393 -0.749 7.819 34.340 -3.049 -1.202 3.053 13.032 1.249 35.201 2 AA_DT0DA1:DT38DA39_AA A 0 ? A 39 ? A 1 ? A 38 ? 1 A DA 4 1_555 A DT 41 1_555 A DC 5 1_555 A DG 40 1_555 -0.377 -0.433 3.253 1.289 3.124 29.671 -1.481 0.996 3.173 6.075 -2.507 29.858 3 AA_DA1DC2:DG37DT38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 A DC 5 1_555 A DG 40 1_555 A DG 6 1_555 A DC 39 1_555 -0.475 0.624 3.327 -1.629 5.303 37.971 0.265 0.513 3.397 8.098 2.487 38.359 4 AA_DC2DG3:DC36DG37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 A DG 6 1_555 A DC 39 1_555 A DA 7 1_555 A DT 38 1_555 0.212 0.272 3.278 -1.667 0.381 39.483 0.357 -0.509 3.269 0.563 2.466 39.519 5 AA_DG3DA4:DT35DC36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 A DA 7 1_555 A DT 38 1_555 A DC 8 1_555 A DG 37 1_555 0.715 -0.204 3.164 3.509 3.683 25.899 -1.409 -0.651 3.172 8.117 -7.734 26.385 6 AA_DA4DC5:DG34DT35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 A DC 8 1_555 A DG 37 1_555 A DA 9 1_555 A DT 36 1_555 -0.594 1.176 3.207 0.456 4.037 39.003 1.272 0.940 3.301 6.026 -0.681 39.206 7 AA_DC5DA6:DT33DG34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 A DA 9 1_555 A DT 36 1_555 A DG 11 1_555 A DG 32 1_555 1.455 5.284 3.040 16.283 -9.762 80.599 4.226 -0.744 2.704 -7.453 -12.432 82.432 8 AA_DA6DG8:DG29DT33_AA A 6 ? A 33 ? A 8 ? A 29 ? 1 A DA 13 1_555 A DT 33 1_555 A DG 14 1_555 A DT 30 1_555 3.921 1.822 3.061 24.633 14.116 52.148 0.928 -2.374 4.667 14.877 -25.960 58.896 9 AA_DA10DG11:DT27DT30_AA A 10 ? A 30 ? A 11 ? A 27 ? 1 A DG 14 1_555 A DT 30 1_555 A DG 15 1_555 A DA 29 1_555 -1.864 0.568 3.251 -2.375 3.760 39.431 0.390 2.464 3.391 5.552 3.507 39.671 10 AA_DG11DG12:DA26DT27_AA A 11 ? A 27 ? A 12 ? A 26 ? 1 A DG 15 1_555 A DA 29 1_555 A DT 17 1_555 A DA 28 1_555 -0.476 0.199 3.593 -5.615 -7.829 58.168 0.647 0.165 3.570 -7.993 5.732 58.892 11 AA_DG12DT14:DA25DA26_AA A 12 ? A 26 ? A 14 ? A 25 ? 1 A DT 17 1_555 A DA 28 1_555 A DT 18 1_555 A DA 27 1_555 -0.718 0.069 3.271 0.370 -1.157 34.011 0.301 1.286 3.260 -1.977 -0.632 34.032 12 AA_DT14DT15:DA24DA25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 A DT 18 1_555 A DA 27 1_555 A DA 19 1_555 A DT 26 1_555 0.608 1.786 3.279 0.129 -4.200 42.780 2.844 -0.817 3.101 -5.742 -0.177 42.976 13 AA_DT15DA16:DT23DA24_AA A 15 ? A 24 ? A 16 ? A 23 ? 1 A DA 19 1_555 A DT 26 1_555 A DG 20 1_555 A DC 25 1_555 0.442 -0.413 3.087 -3.058 -0.128 26.621 -0.859 -1.695 3.020 -0.277 6.612 26.794 14 AA_DA16DG17:DC22DT23_AA A 16 ? A 23 ? A 17 ? A 22 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'Ba SAD' # _space_group.name_H-M_alt 'C 1 2 1' _space_group.name_Hall 'C 2y' _space_group.IT_number 5 _space_group.crystal_system monoclinic _space_group.id 1 # _atom_sites.entry_id 9URV _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.012232 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001023 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035953 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019403 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #