HEADER DNA 30-APR-25 9URV TITLE CRYSTAL STRUCTURE OF ADE1304 DNA APTAMER (1304B9) BOUND TO AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (44-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS ADENOSINE/ATP DNA APTAMER, AMP, DNA EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,Y.LUO,Y.REN,L.HUANG REVDAT 1 11-NOV-26 9URV 0 JRNL AUTH X.CHEN,Y.LUO,Y.REN,L.HUANG JRNL TITL CRYSTAL STRUCTURE OF ADENOSINE AND ATP-BINDING DNA APTAMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 15719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.570 REMARK 3 FREE R VALUE TEST SET COUNT : 718 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.5400 - 2.7200 1.00 3135 136 0.1499 0.1555 REMARK 3 2 2.7200 - 2.1600 1.00 3006 149 0.2108 0.2286 REMARK 3 3 2.1600 - 1.8900 0.99 2983 162 0.2181 0.2824 REMARK 3 4 1.8900 - 1.7100 0.98 2944 147 0.2113 0.3015 REMARK 3 5 1.7100 - 1.5900 0.97 2933 124 0.2395 0.2968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 1039 REMARK 3 ANGLE : 1.724 1603 REMARK 3 CHIRALITY : 0.093 179 REMARK 3 PLANARITY : 0.024 45 REMARK 3 DIHEDRAL : 33.557 489 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1445 -4.4575 -6.3322 REMARK 3 T TENSOR REMARK 3 T11: 0.1532 T22: 0.1157 REMARK 3 T33: 0.0745 T12: -0.0116 REMARK 3 T13: 0.0226 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.6279 L22: 2.1006 REMARK 3 L33: 4.3626 L12: 0.4912 REMARK 3 L13: 0.9380 L23: 2.9867 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.0057 S13: 0.0102 REMARK 3 S21: 0.1204 S22: 0.1125 S23: -0.2268 REMARK 3 S31: 0.3028 S32: -0.0319 S33: -0.1570 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1897 7.0433 15.4432 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.1289 REMARK 3 T33: 0.0988 T12: 0.0051 REMARK 3 T13: 0.0172 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.9661 L22: 1.6895 REMARK 3 L33: 6.4257 L12: -1.8239 REMARK 3 L13: -3.1206 L23: 3.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.0781 S12: -0.1493 S13: 0.0642 REMARK 3 S21: 0.2301 S22: 0.1662 S23: -0.0536 REMARK 3 S31: 0.2912 S32: 0.2423 S33: -0.0937 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5100 -10.9542 -14.2194 REMARK 3 T TENSOR REMARK 3 T11: 0.2533 T22: 0.2201 REMARK 3 T33: 0.1099 T12: 0.0257 REMARK 3 T13: -0.0521 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 4.4862 L22: 8.4717 REMARK 3 L33: 5.7430 L12: -2.6366 REMARK 3 L13: -2.9875 L23: 5.6897 REMARK 3 S TENSOR REMARK 3 S11: 0.2678 S12: -0.1767 S13: 0.1288 REMARK 3 S21: -0.4978 S22: -0.2869 S23: 0.0168 REMARK 3 S31: -0.1625 S32: -0.2388 S33: 0.0139 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9URV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 05-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300058549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15775 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 51.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.17600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 0.05 REMARK 280 M HEPES SODIUM PH 7.8, 30% V/V POLYETHYLENE GLYCOL 400, 0.002 M REMARK 280 SPERMINE TETRAHYDROCHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.87650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 13.90700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.87650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 13.90700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 378 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 385 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 300 O HOH A 392 1.63 REMARK 500 O HOH A 201 O HOH A 310 1.75 REMARK 500 OP1 DG A 3 O HOH A 201 1.85 REMARK 500 OP1 DG A 9 O HOH A 202 1.86 REMARK 500 O HOH A 249 O HOH A 363 1.94 REMARK 500 O HOH A 217 O HOH A 297 2.00 REMARK 500 OP2 DC A 36 O HOH A 203 2.00 REMARK 500 OP1 DG A 8 O HOH A 204 2.00 REMARK 500 O3' DC A 2 O HOH A 201 2.00 REMARK 500 O HOH A 388 O HOH A 409 2.07 REMARK 500 O HOH A 240 O HOH A 373 2.09 REMARK 500 O HOH A 215 O HOH A 304 2.10 REMARK 500 O HOH A 238 O HOH A 326 2.12 REMARK 500 O HOH A 215 O HOH A 362 2.15 REMARK 500 OP1 DC A 7 O HOH A 205 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 230 O HOH A 274 2555 1.83 REMARK 500 O HOH A 215 O HOH A 403 1566 2.05 REMARK 500 O HOH A 241 O HOH A 372 1545 2.08 REMARK 500 O HOH A 214 O HOH A 261 4445 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A 3 C5 DG A 3 N7 0.046 REMARK 500 DA A 4 C6 DA A 4 N1 -0.056 REMARK 500 DA A 6 C3' DA A 6 C2' 0.083 REMARK 500 DA A 6 C8 DA A 6 N9 -0.054 REMARK 500 DC A 7 N1 DC A 7 C6 -0.040 REMARK 500 DG A 9 C5 DG A 9 N7 0.045 REMARK 500 DT A 15 C5 DT A 15 C7 -0.053 REMARK 500 DT A 20 O3' DT A 20 C3' -0.048 REMARK 500 DA A 24 O3' DA A 24 C3' -0.073 REMARK 500 DA A 25 C6 DA A 25 N1 -0.053 REMARK 500 DA A 25 N9 DA A 25 C4 -0.046 REMARK 500 DG A 28 N7 DG A 28 C8 0.054 REMARK 500 DG A 29 O3' DG A 29 C3' -0.053 REMARK 500 DT A 30 P DT A 30 O5' -0.060 REMARK 500 DA A 32 N3 DA A 32 C4 -0.043 REMARK 500 DT A 35 C5 DT A 35 C7 -0.048 REMARK 500 DC A 36 C1' DC A 36 N1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT A 0 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DT A 0 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC A 5 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DC A 7 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG A 21 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT A 23 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA A 25 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA A 25 C2 - N3 - C4 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG A 28 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT A 30 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC A 31 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DT A 35 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT A 38 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A -1 OP2 REMARK 620 2 DT A 20 OP1 56.3 REMARK 620 3 DC A 22 OP2 45.2 11.4 REMARK 620 4 HOH A 235 O 40.8 15.6 4.8 REMARK 620 5 HOH A 355 O 44.2 12.2 3.2 3.6 REMARK 620 6 HOH A 370 O 43.3 13.1 2.4 2.6 1.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 104 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A -1 OP1 REMARK 620 2 DT A 19 OP2 81.8 REMARK 620 3 DT A 20 OP2 79.3 2.5 REMARK 620 4 DC A 22 OP1 68.5 14.1 12.0 REMARK 620 5 HOH A 308 O 79.4 3.2 2.7 11.3 REMARK 620 6 HOH A 348 O 79.8 2.0 1.2 12.1 1.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 6 OP2 REMARK 620 2 DC A 7 O2 82.6 REMARK 620 3 DG A 29 OP1 71.8 67.3 REMARK 620 4 HOH A 274 O 81.1 70.8 9.8 REMARK 620 5 HOH A 307 O 72.7 87.8 20.5 19.7 REMARK 620 6 HOH A 332 O 81.7 81.0 16.4 10.2 12.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 105 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 13 OP2 REMARK 620 2 DG A 21 O6 130.8 REMARK 620 3 HOH A 240 O 85.8 142.9 REMARK 620 4 HOH A 246 O 94.3 41.9 151.3 REMARK 620 5 HOH A 342 O 104.1 95.2 77.6 129.7 REMARK 620 6 HOH A 376 O 93.1 93.6 76.8 74.5 147.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 106 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 27 OP1 REMARK 620 2 DA A 39 OP1 57.4 REMARK 620 3 HOH A 358 O 69.4 39.6 REMARK 620 4 HOH A 382 O 81.4 55.1 93.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT A 27 O2 REMARK 620 2 DT A 30 O4 84.5 REMARK 620 3 HOH A 389 O 134.8 118.3 REMARK 620 N 1 2 DBREF 9URV A -2 41 PDB 9URV 9URV -2 41 SEQRES 1 A 44 DT DG DT DA DC DG DA DC DA DC DG DG DA SEQRES 2 A 44 DG DG DC DT DT DA DG DT DT DT DG DC DT SEQRES 3 A 44 DA DA DA DT DG DG DT DC DA DT DG DT DC SEQRES 4 A 44 DG DT DA DC DA HET AMP A 101 35 HET CA A 102 1 HET CA A 103 1 HET CA A 104 1 HET NA A 105 1 HET NA A 106 1 HET NA A 107 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 CA 3(CA 2+) FORMUL 6 NA 3(NA 1+) FORMUL 9 HOH *214(H2 O) LINK OP2 DG A -1 CA CA A 102 1555 4445 2.27 LINK OP1 DG A -1 CA CA A 104 1555 1544 2.40 LINK OP2 DA A 6 CA CA A 103 1555 2555 2.37 LINK O2 DC A 7 CA CA A 103 1555 2555 2.47 LINK OP2 DC A 13 NA NA A 105 1555 1555 2.19 LINK OP2 DT A 19 CA CA A 104 1555 1555 2.35 LINK OP1 DT A 20 CA CA A 102 1555 4456 2.30 LINK OP2 DT A 20 CA CA A 104 1555 1555 2.26 LINK O6 DG A 21 NA NA A 105 1555 4456 2.28 LINK OP2 DC A 22 CA CA A 102 1555 1555 2.31 LINK OP1 DC A 22 CA CA A 104 1555 4446 2.34 LINK OP1 DT A 27 NA NA A 106 1555 1555 3.00 LINK O2 DT A 27 NA NA A 107 1555 1555 2.86 LINK OP1 DG A 29 CA CA A 103 1555 1555 2.28 LINK O4 DT A 30 NA NA A 107 1555 1555 2.83 LINK OP1 DA A 39 NA NA A 106 1555 2545 2.32 LINK CA CA A 102 O HOH A 235 1555 4446 2.37 LINK CA CA A 102 O HOH A 355 1555 1555 2.39 LINK CA CA A 102 O HOH A 370 1555 4446 2.34 LINK CA CA A 103 O HOH A 274 1555 2555 2.40 LINK CA CA A 103 O HOH A 307 1555 1555 2.56 LINK CA CA A 103 O HOH A 332 1555 2555 2.35 LINK CA CA A 104 O HOH A 308 1555 1566 2.30 LINK CA CA A 104 O HOH A 348 1555 1566 2.37 LINK NA NA A 105 O HOH A 240 1555 1545 2.23 LINK NA NA A 105 O HOH A 246 1555 4455 2.40 LINK NA NA A 105 O HOH A 342 1555 4446 2.60 LINK NA NA A 105 O HOH A 376 1555 4446 2.53 LINK NA NA A 106 O HOH A 358 1555 1555 2.39 LINK NA NA A 106 O HOH A 382 1555 1555 2.26 LINK NA NA A 107 O HOH A 389 1555 1555 2.84 CRYST1 81.753 27.814 51.718 90.00 94.78 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012232 0.000000 0.001023 0.00000 SCALE2 0.000000 0.035953 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019403 0.00000 CONECT 481 1443 CONECT 672 1442 CONECT 704 1442 CONECT 769 1440 CONECT 926 1444 CONECT 938 1445 CONECT 991 1441 CONECT 1039 1445 CONECT 1405 1406 1407 1408 1409 CONECT 1406 1405 CONECT 1407 1405 CONECT 1408 1405 CONECT 1409 1405 1410 CONECT 1410 1409 1411 1428 1429 CONECT 1411 1410 1412 1413 1430 CONECT 1412 1411 1417 CONECT 1413 1411 1414 1415 1431 CONECT 1414 1413 1432 CONECT 1415 1413 1416 1417 1433 CONECT 1416 1415 1434 CONECT 1417 1412 1415 1418 1435 CONECT 1418 1417 1419 1427 CONECT 1419 1418 1420 1436 CONECT 1420 1419 1421 CONECT 1421 1420 1422 1427 CONECT 1422 1421 1423 1424 CONECT 1423 1422 1437 1438 CONECT 1424 1422 1425 CONECT 1425 1424 1426 1439 CONECT 1426 1425 1427 CONECT 1427 1418 1421 1426 CONECT 1428 1410 CONECT 1429 1410 CONECT 1430 1411 CONECT 1431 1413 CONECT 1432 1414 CONECT 1433 1415 CONECT 1434 1416 CONECT 1435 1417 CONECT 1436 1419 CONECT 1437 1423 CONECT 1438 1423 CONECT 1439 1425 CONECT 1440 769 1600 CONECT 1441 991 1552 CONECT 1442 672 704 CONECT 1443 481 CONECT 1444 926 1603 1627 CONECT 1445 938 1039 1634 CONECT 1552 1441 CONECT 1600 1440 CONECT 1603 1444 CONECT 1627 1444 CONECT 1634 1445 MASTER 446 0 7 0 0 0 0 6 1147 1 54 4 END