HEADER DNA 30-APR-25 9US1 TITLE CRYSTAL STRUCTURE OF ADE1304 DNA APTAMER (1304B11) BOUND TO ADENOSINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (48-MER); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS ADENOSINE/ATP DNA APTAMER, ADO, DNA EXPDTA X-RAY DIFFRACTION AUTHOR X.CHEN,Y.LUO,Y.REN,L.HUANG REVDAT 1 11-NOV-26 9US1 0 JRNL AUTH X.CHEN,Y.LUO,Y.REN,L.HUANG JRNL TITL CRYSTAL STRUCTURE OF ADENOSINE AND ATP-BINDING DNA APTAMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.21.1_5286 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 9548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9500 - 3.6900 1.00 3189 173 0.2070 0.2067 REMARK 3 2 3.6900 - 2.9300 0.98 2967 135 0.2285 0.2664 REMARK 3 3 2.9300 - 2.5600 0.98 2926 158 0.3750 0.3949 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.423 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 101.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2254 REMARK 3 ANGLE : 1.252 3476 REMARK 3 CHIRALITY : 0.069 390 REMARK 3 PLANARITY : 0.010 98 REMARK 3 DIHEDRAL : 34.859 1092 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID -4:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.600 2.086 -14.094 REMARK 3 T TENSOR REMARK 3 T11: 1.3001 T22: 1.0231 REMARK 3 T33: 0.9649 T12: -0.1967 REMARK 3 T13: -0.3804 T23: -0.3830 REMARK 3 L TENSOR REMARK 3 L11: 0.2328 L22: 0.2243 REMARK 3 L33: 0.0948 L12: -0.2160 REMARK 3 L13: -0.1489 L23: 0.1144 REMARK 3 S TENSOR REMARK 3 S11: 1.1515 S12: -0.5018 S13: -0.9264 REMARK 3 S21: 0.4045 S22: -0.0113 S23: -0.2018 REMARK 3 S31: -0.1394 S32: 0.0349 S33: 0.2418 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 6:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.170 -13.750 -35.060 REMARK 3 T TENSOR REMARK 3 T11: 1.0225 T22: 0.8546 REMARK 3 T33: 0.7386 T12: 0.0592 REMARK 3 T13: -0.2501 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.1414 L22: 0.7486 REMARK 3 L33: 0.0672 L12: 0.0531 REMARK 3 L13: 0.0141 L23: 0.2364 REMARK 3 S TENSOR REMARK 3 S11: -0.0449 S12: -0.0324 S13: 0.2780 REMARK 3 S21: 1.5649 S22: 0.1577 S23: -0.9271 REMARK 3 S31: 0.6671 S32: 0.1258 S33: -0.0204 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 16:30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.629 -16.041 -48.224 REMARK 3 T TENSOR REMARK 3 T11: 0.4803 T22: 0.6784 REMARK 3 T33: 0.6610 T12: -0.0006 REMARK 3 T13: -0.1496 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.1486 L22: 0.4890 REMARK 3 L33: 0.1671 L12: -0.2517 REMARK 3 L13: -0.0823 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: -0.0118 S12: -0.1463 S13: 0.2754 REMARK 3 S21: 0.3863 S22: -0.0014 S23: -0.1698 REMARK 3 S31: 0.2289 S32: -0.0294 S33: 0.0002 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 31:40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.464 -3.265 -22.201 REMARK 3 T TENSOR REMARK 3 T11: 1.3980 T22: 0.6605 REMARK 3 T33: 1.4011 T12: 0.1500 REMARK 3 T13: -0.7413 T23: -0.2840 REMARK 3 L TENSOR REMARK 3 L11: 2.6415 L22: 0.1656 REMARK 3 L33: 1.0465 L12: 0.6520 REMARK 3 L13: -1.6473 L23: -0.3874 REMARK 3 S TENSOR REMARK 3 S11: -0.2187 S12: -1.1342 S13: 0.0939 REMARK 3 S21: -0.0706 S22: 0.0373 S23: 0.0008 REMARK 3 S31: -0.3388 S32: 0.4026 S33: -0.1463 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 41:43) REMARK 3 ORIGIN FOR THE GROUP (A): 7.992 11.109 -10.021 REMARK 3 T TENSOR REMARK 3 T11: 1.3443 T22: 1.1870 REMARK 3 T33: 1.2805 T12: -0.2649 REMARK 3 T13: -0.1971 T23: -0.3275 REMARK 3 L TENSOR REMARK 3 L11: 0.0054 L22: 0.0342 REMARK 3 L33: 0.0207 L12: 0.0040 REMARK 3 L13: 0.0126 L23: -0.0065 REMARK 3 S TENSOR REMARK 3 S11: 0.0542 S12: 0.2537 S13: 0.1957 REMARK 3 S21: -0.0971 S22: -0.1015 S23: -0.2917 REMARK 3 S31: -0.1587 S32: -0.1067 S33: 0.0011 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID -4:0 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.905 -16.502 -4.232 REMARK 3 T TENSOR REMARK 3 T11: 2.5693 T22: 2.3481 REMARK 3 T33: 1.3299 T12: 1.1050 REMARK 3 T13: 0.5928 T23: -1.3620 REMARK 3 L TENSOR REMARK 3 L11: 0.0731 L22: 0.2777 REMARK 3 L33: 0.0863 L12: 0.1387 REMARK 3 L13: -0.0754 L23: -0.1509 REMARK 3 S TENSOR REMARK 3 S11: 0.1312 S12: 0.1053 S13: -0.1582 REMARK 3 S21: -0.1905 S22: 0.2525 S23: -0.2326 REMARK 3 S31: 0.0948 S32: -0.1210 S33: 0.3431 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 1:5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.421 -22.030 -16.329 REMARK 3 T TENSOR REMARK 3 T11: 1.8367 T22: 1.4402 REMARK 3 T33: 1.3332 T12: 0.4842 REMARK 3 T13: -0.2544 T23: -0.6603 REMARK 3 L TENSOR REMARK 3 L11: 0.0141 L22: 0.0403 REMARK 3 L33: 0.0009 L12: 0.0151 REMARK 3 L13: 0.0027 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.1594 S12: -0.1258 S13: 0.3884 REMARK 3 S21: 0.1112 S22: -0.2352 S23: -0.3992 REMARK 3 S31: -0.3957 S32: -0.5157 S33: 0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN B AND RESID 6:10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.179 -38.853 -25.975 REMARK 3 T TENSOR REMARK 3 T11: 1.5476 T22: 0.8877 REMARK 3 T33: 0.7622 T12: -0.0703 REMARK 3 T13: 0.1706 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.0262 L22: 0.0616 REMARK 3 L33: 0.0022 L12: 0.0056 REMARK 3 L13: 0.0069 L23: 0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.1225 S12: 0.0402 S13: -0.1422 REMARK 3 S21: 0.6315 S22: 0.3225 S23: 0.6074 REMARK 3 S31: 0.1673 S32: -0.4045 S33: 0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN B AND RESID 11:30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.413 -39.681 -43.536 REMARK 3 T TENSOR REMARK 3 T11: 0.7982 T22: 1.0593 REMARK 3 T33: 0.7837 T12: 0.0060 REMARK 3 T13: 0.0564 T23: -0.1845 REMARK 3 L TENSOR REMARK 3 L11: 0.1369 L22: 0.1264 REMARK 3 L33: 0.1689 L12: -0.2404 REMARK 3 L13: -0.0824 L23: -0.0417 REMARK 3 S TENSOR REMARK 3 S11: 0.2323 S12: -0.3827 S13: 0.3673 REMARK 3 S21: 0.3721 S22: 0.5010 S23: -0.4385 REMARK 3 S31: 0.4117 S32: 1.3393 S33: -0.0023 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN B AND RESID 31:35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.086 -27.417 -27.641 REMARK 3 T TENSOR REMARK 3 T11: 1.8952 T22: 0.7704 REMARK 3 T33: 1.5492 T12: -0.0848 REMARK 3 T13: 0.3759 T23: -0.6738 REMARK 3 L TENSOR REMARK 3 L11: 0.1171 L22: 0.1997 REMARK 3 L33: 0.6059 L12: -0.1468 REMARK 3 L13: 0.2664 L23: -0.3334 REMARK 3 S TENSOR REMARK 3 S11: -0.4119 S12: -0.0587 S13: 0.3939 REMARK 3 S21: -0.3572 S22: -0.1607 S23: 0.4702 REMARK 3 S31: -0.5631 S32: -0.0437 S33: -0.2342 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: ( CHAIN B AND RESID 36:43) REMARK 3 ORIGIN FOR THE GROUP (A): -7.374 -18.339 -7.762 REMARK 3 T TENSOR REMARK 3 T11: 1.5744 T22: 2.1392 REMARK 3 T33: 1.3499 T12: 0.4442 REMARK 3 T13: 0.3652 T23: -0.4953 REMARK 3 L TENSOR REMARK 3 L11: 0.6212 L22: 0.1008 REMARK 3 L33: 0.3349 L12: 0.1957 REMARK 3 L13: 0.1830 L23: -0.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.0031 S12: -0.1360 S13: 0.6695 REMARK 3 S21: 0.0894 S22: 0.1825 S23: -0.0529 REMARK 3 S31: -0.6815 S32: -0.4506 S33: -0.0447 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "A" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : chain "B" REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9US1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 05-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300058550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9718 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 114.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE DIHYDRATE, 0.05 REMARK 280 M HEPES SODIUM PH 7.5, 28% V/V POLYETHYLENE GLYCOL 400, 0.002 M REMARK 280 SPERMINE, 0.01 M BARIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.08000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 114.08000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -23.87600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -114.08000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -50.46900 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -23.87600 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 -50.46900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -114.08000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -50.46900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -23.87600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -114.08000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 202 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DG B 21 O HOH B 201 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG A -1 O3' DG A -1 C3' -0.054 REMARK 500 DT A 20 C2 DT A 20 O2 -0.052 REMARK 500 DT A 33 O3' DT A 33 C3' -0.043 REMARK 500 DT A 42 O3' DT A 42 C3' -0.041 REMARK 500 DA B 16 O3' DA B 16 C3' -0.038 REMARK 500 DT B 23 O3' DT B 23 C3' -0.043 REMARK 500 DA B 24 O3' DA B 24 C3' -0.067 REMARK 500 DT B 30 O3' DT B 30 C3' -0.047 REMARK 500 DA B 39 O3' DA B 39 C3' -0.043 REMARK 500 DA B 41 O3' DA B 41 C3' -0.045 REMARK 500 DT B 42 O3' DT B 42 C3' -0.038 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 17 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT A 20 N3 - C4 - O4 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT A 23 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA A 24 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC A 31 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA A 32 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC A 40 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT B -2 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA B 24 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DG B 28 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 2 OP2 REMARK 620 2 DC B 7 O2 44.3 REMARK 620 3 DG B 8 O6 45.9 2.3 REMARK 620 4 DG B 29 OP2 45.4 5.4 3.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 104 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 2 OP1 REMARK 620 2 DG B 29 OP1 69.7 REMARK 620 N 1 DBREF 9US1 A -4 43 PDB 9US1 9US1 -4 43 DBREF 9US1 B -4 43 PDB 9US1 9US1 -4 43 SEQRES 1 A 48 DG DA DT DG DT DA DC DG DA DC DA DC DG SEQRES 2 A 48 DG DA DG DG DC DT DT DA DG DT DT DT DG SEQRES 3 A 48 DC DT DA DA DA DT DG DG DT DC DA DT DG SEQRES 4 A 48 DT DC DG DT DA DC DA DT DC SEQRES 1 B 48 DG DA DT DG DT DA DC DG DA DC DA DC DG SEQRES 2 B 48 DG DA DG DG DC DT DT DA DG DT DT DT DG SEQRES 3 B 48 DC DT DA DA DA DT DG DG DT DC DA DT DG SEQRES 4 B 48 DT DC DG DT DA DC DA DT DC HET ADN A 101 19 HET BA A 102 1 HET ADN B 101 19 HET CA B 102 1 HET NA B 103 1 HET NA B 104 1 HETNAM ADN ADENOSINE HETNAM BA BARIUM ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION FORMUL 3 ADN 2(C10 H13 N5 O4) FORMUL 4 BA BA 2+ FORMUL 6 CA CA 2+ FORMUL 7 NA 2(NA 1+) FORMUL 9 HOH *6(H2 O) LINK OP2 DC A 2 CA CA B 102 1555 1565 2.20 LINK OP1 DC A 2 NA NA B 104 1555 1565 2.48 LINK O2 DC B 7 CA CA B 102 1555 1555 2.57 LINK O6 DG B 8 CA CA B 102 1555 1555 2.05 LINK OP2 DG B 29 CA CA B 102 1555 1555 2.50 LINK OP1 DG B 29 NA NA B 104 1555 1555 2.33 CRYST1 23.876 50.469 228.160 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.041883 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019814 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004383 0.00000 MTRIX1 1 0.753042 -0.200407 -0.626710 -17.50900 1 MTRIX2 1 0.241677 0.970154 -0.019838 -22.27916 1 MTRIX3 1 0.611981 -0.136523 0.779000 -0.27484 1 CONECT 1226 2014 CONECT 1248 2014 CONECT 1670 2016 CONECT 1671 2014 CONECT 1975 1976 CONECT 1976 1975 1977 CONECT 1977 1976 1978 1979 CONECT 1978 1977 1983 CONECT 1979 1977 1980 1981 CONECT 1980 1979 CONECT 1981 1979 1982 1983 CONECT 1982 1981 CONECT 1983 1978 1981 1984 CONECT 1984 1983 1985 1993 CONECT 1985 1984 1986 CONECT 1986 1985 1987 CONECT 1987 1986 1988 1993 CONECT 1988 1987 1989 1990 CONECT 1989 1988 CONECT 1990 1988 1991 CONECT 1991 1990 1992 CONECT 1992 1991 1993 CONECT 1993 1984 1987 1992 CONECT 1995 1996 CONECT 1996 1995 1997 CONECT 1997 1996 1998 1999 CONECT 1998 1997 2003 CONECT 1999 1997 2000 2001 CONECT 2000 1999 CONECT 2001 1999 2002 2003 CONECT 2002 2001 CONECT 2003 1998 2001 2004 CONECT 2004 2003 2005 2013 CONECT 2005 2004 2006 CONECT 2006 2005 2007 CONECT 2007 2006 2008 2013 CONECT 2008 2007 2009 2010 CONECT 2009 2008 CONECT 2010 2008 2011 CONECT 2011 2010 2012 CONECT 2012 2011 2013 CONECT 2013 2004 2007 2012 CONECT 2014 1226 1248 1671 CONECT 2016 1670 MASTER 520 0 6 0 0 0 0 9 2020 2 44 8 END