HEADER PEPTIDE BINDING PROTEIN 03-MAY-25 9UTH TITLE DPF3B IN COMPLEX WITH H3K14CR PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER PROTEIN DPF3; COMPND 3 CHAIN: A, C, E, G; COMPND 4 SYNONYM: BRG1-ASSOCIATED FACTOR 45C,BAF45C,ZINC FINGER PROTEIN CER- COMPND 5 D4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H3.3; COMPND 9 CHAIN: B, D, F, H; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DPF3, BAF45C, CERD4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: H3-3A, H3.3A, H3F3, H3F3A, PP781, H3-3B, H3.3B, H3F3B; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS DPF3B, H3K14 CROTONYLATION, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.FENG,J.HUANG,B.XIANG,H.LI REVDAT 1 06-MAY-26 9UTH 0 JRNL AUTH F.FENG,J.HUANG,B.XIANG,H.LI JRNL TITL DPF3B IN COMPLEX WITH H3K14CR PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18674 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.1100 - 5.5900 0.99 2051 152 0.1591 0.1816 REMARK 3 2 5.5900 - 4.4400 1.00 1969 138 0.1461 0.2123 REMARK 3 3 4.4400 - 3.8800 1.00 1929 159 0.1491 0.1889 REMARK 3 4 3.8800 - 3.5300 1.00 1952 140 0.1682 0.2065 REMARK 3 5 3.5300 - 3.2800 1.00 1946 121 0.2009 0.2558 REMARK 3 6 3.2700 - 3.0800 1.00 1911 159 0.2206 0.2739 REMARK 3 7 3.0800 - 2.9300 1.00 1885 143 0.2224 0.2809 REMARK 3 8 2.9300 - 2.8000 1.00 1889 161 0.2270 0.3236 REMARK 3 9 2.8000 - 2.6900 0.96 1824 145 0.2459 0.2996 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4358 REMARK 3 ANGLE : 0.556 5882 REMARK 3 CHIRALITY : 0.039 625 REMARK 3 PLANARITY : 0.004 775 REMARK 3 DIHEDRAL : 14.365 1634 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300059119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M SODIUM FORMATE, PH 7.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.04400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.56150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.12650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.56150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.04400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.12650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 255 REMARK 465 LYS C 368 REMARK 465 LYS G 368 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 26 CA C O CB REMARK 470 ALA D 26 CA C O CB REMARK 470 ALA F 26 CA C O CB REMARK 470 ALA H 26 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 327 81.75 57.14 REMARK 500 MET E 271 119.99 -164.33 REMARK 500 MET G 271 112.08 -160.06 REMARK 500 LYS G 273 24.43 -78.14 REMARK 500 LYS G 274 -31.90 -131.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 527 DISTANCE = 6.57 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 262 SG REMARK 620 2 CYS A 265 SG 108.8 REMARK 620 3 HIS A 292 ND1 98.8 96.0 REMARK 620 4 CYS A 295 SG 108.4 113.4 129.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 CYS A 287 SG 108.8 REMARK 620 3 CYS A 313 SG 110.0 109.2 REMARK 620 4 CYS A 316 SG 109.9 113.0 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 319 SG REMARK 620 2 CYS A 322 SG 108.6 REMARK 620 3 HIS A 342 ND1 94.9 101.5 REMARK 620 4 CYS A 345 SG 111.4 115.6 122.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 334 SG REMARK 620 2 CYS A 337 SG 107.0 REMARK 620 3 CYS A 360 SG 107.9 114.5 REMARK 620 4 CYS A 363 SG 107.1 110.4 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 262 SG REMARK 620 2 CYS C 265 SG 111.7 REMARK 620 3 HIS C 292 ND1 105.6 97.5 REMARK 620 4 CYS C 295 SG 110.4 114.2 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 284 SG REMARK 620 2 CYS C 287 SG 108.6 REMARK 620 3 CYS C 313 SG 107.0 112.0 REMARK 620 4 CYS C 316 SG 111.9 113.4 103.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 319 SG REMARK 620 2 CYS C 322 SG 109.1 REMARK 620 3 HIS C 342 ND1 99.2 99.7 REMARK 620 4 CYS C 345 SG 114.6 116.7 115.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 334 SG REMARK 620 2 CYS C 337 SG 105.6 REMARK 620 3 CYS C 360 SG 108.2 109.8 REMARK 620 4 CYS C 363 SG 112.4 105.4 114.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 262 SG REMARK 620 2 CYS E 265 SG 111.3 REMARK 620 3 HIS E 292 ND1 99.2 92.8 REMARK 620 4 CYS E 295 SG 113.3 116.5 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 284 SG REMARK 620 2 CYS E 287 SG 104.3 REMARK 620 3 CYS E 313 SG 110.4 117.8 REMARK 620 4 CYS E 316 SG 112.5 103.4 108.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 319 SG REMARK 620 2 CYS E 322 SG 109.9 REMARK 620 3 HIS E 342 ND1 99.7 89.9 REMARK 620 4 CYS E 345 SG 114.8 119.0 119.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS E 334 SG REMARK 620 2 CYS E 337 SG 106.8 REMARK 620 3 CYS E 360 SG 109.7 115.3 REMARK 620 4 CYS E 363 SG 107.4 107.1 110.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 262 SG REMARK 620 2 CYS G 265 SG 109.6 REMARK 620 3 HIS G 292 ND1 104.9 91.4 REMARK 620 4 CYS G 295 SG 111.3 116.9 120.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 284 SG REMARK 620 2 CYS G 287 SG 106.7 REMARK 620 3 CYS G 313 SG 109.0 112.2 REMARK 620 4 CYS G 316 SG 112.3 112.8 103.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 319 SG REMARK 620 2 CYS G 322 SG 109.3 REMARK 620 3 HIS G 342 ND1 105.6 99.4 REMARK 620 4 CYS G 345 SG 114.0 112.2 115.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN G 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS G 334 SG REMARK 620 2 CYS G 337 SG 106.1 REMARK 620 3 CYS G 360 SG 111.9 111.8 REMARK 620 4 CYS G 363 SG 113.3 102.6 110.8 REMARK 620 N 1 2 3 DBREF 9UTH A 255 368 UNP Q92784 DPF3_HUMAN 255 368 DBREF 9UTH B 1 26 UNP P84243 H33_HUMAN 2 27 DBREF 9UTH C 255 368 UNP Q92784 DPF3_HUMAN 255 368 DBREF 9UTH D 1 26 UNP P84243 H33_HUMAN 2 27 DBREF 9UTH E 255 368 UNP Q92784 DPF3_HUMAN 255 368 DBREF 9UTH F 1 26 UNP P84243 H33_HUMAN 2 27 DBREF 9UTH G 255 368 UNP Q92784 DPF3_HUMAN 255 368 DBREF 9UTH H 1 26 UNP P84243 H33_HUMAN 2 27 SEQADV 9UTH SER A 255 UNP Q92784 THR 255 CONFLICT SEQADV 9UTH ALA B 26 UNP P84243 ARG 27 CONFLICT SEQADV 9UTH SER C 255 UNP Q92784 THR 255 CONFLICT SEQADV 9UTH ALA D 26 UNP P84243 ARG 27 CONFLICT SEQADV 9UTH SER E 255 UNP Q92784 THR 255 CONFLICT SEQADV 9UTH ALA F 26 UNP P84243 ARG 27 CONFLICT SEQADV 9UTH SER G 255 UNP Q92784 THR 255 CONFLICT SEQADV 9UTH ALA H 26 UNP P84243 ARG 27 CONFLICT SEQRES 1 A 114 SER VAL ILE PRO ASN ASN TYR CYS ASP PHE CYS LEU GLY SEQRES 2 A 114 GLY SER ASN MET ASN LYS LYS SER GLY ARG PRO GLU GLU SEQRES 3 A 114 LEU VAL SER CYS ALA ASP CYS GLY ARG SER GLY HIS PRO SEQRES 4 A 114 THR CYS LEU GLN PHE THR LEU ASN MET THR GLU ALA VAL SEQRES 5 A 114 LYS THR TYR LYS TRP GLN CYS ILE GLU CYS LYS SER CYS SEQRES 6 A 114 ILE LEU CYS GLY THR SER GLU ASN ASP ASP GLN LEU LEU SEQRES 7 A 114 PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR CYS SEQRES 8 A 114 LEU ASN PRO PRO VAL ALA GLU PRO PRO GLU GLY SER TRP SEQRES 9 A 114 SER CYS HIS LEU CYS TRP GLU LEU LEU LYS SEQRES 1 B 26 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 B 26 KCR ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ALA SEQRES 1 C 114 SER VAL ILE PRO ASN ASN TYR CYS ASP PHE CYS LEU GLY SEQRES 2 C 114 GLY SER ASN MET ASN LYS LYS SER GLY ARG PRO GLU GLU SEQRES 3 C 114 LEU VAL SER CYS ALA ASP CYS GLY ARG SER GLY HIS PRO SEQRES 4 C 114 THR CYS LEU GLN PHE THR LEU ASN MET THR GLU ALA VAL SEQRES 5 C 114 LYS THR TYR LYS TRP GLN CYS ILE GLU CYS LYS SER CYS SEQRES 6 C 114 ILE LEU CYS GLY THR SER GLU ASN ASP ASP GLN LEU LEU SEQRES 7 C 114 PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR CYS SEQRES 8 C 114 LEU ASN PRO PRO VAL ALA GLU PRO PRO GLU GLY SER TRP SEQRES 9 C 114 SER CYS HIS LEU CYS TRP GLU LEU LEU LYS SEQRES 1 D 26 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 D 26 KCR ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ALA SEQRES 1 E 114 SER VAL ILE PRO ASN ASN TYR CYS ASP PHE CYS LEU GLY SEQRES 2 E 114 GLY SER ASN MET ASN LYS LYS SER GLY ARG PRO GLU GLU SEQRES 3 E 114 LEU VAL SER CYS ALA ASP CYS GLY ARG SER GLY HIS PRO SEQRES 4 E 114 THR CYS LEU GLN PHE THR LEU ASN MET THR GLU ALA VAL SEQRES 5 E 114 LYS THR TYR LYS TRP GLN CYS ILE GLU CYS LYS SER CYS SEQRES 6 E 114 ILE LEU CYS GLY THR SER GLU ASN ASP ASP GLN LEU LEU SEQRES 7 E 114 PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR CYS SEQRES 8 E 114 LEU ASN PRO PRO VAL ALA GLU PRO PRO GLU GLY SER TRP SEQRES 9 E 114 SER CYS HIS LEU CYS TRP GLU LEU LEU LYS SEQRES 1 F 26 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 F 26 KCR ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ALA SEQRES 1 G 114 SER VAL ILE PRO ASN ASN TYR CYS ASP PHE CYS LEU GLY SEQRES 2 G 114 GLY SER ASN MET ASN LYS LYS SER GLY ARG PRO GLU GLU SEQRES 3 G 114 LEU VAL SER CYS ALA ASP CYS GLY ARG SER GLY HIS PRO SEQRES 4 G 114 THR CYS LEU GLN PHE THR LEU ASN MET THR GLU ALA VAL SEQRES 5 G 114 LYS THR TYR LYS TRP GLN CYS ILE GLU CYS LYS SER CYS SEQRES 6 G 114 ILE LEU CYS GLY THR SER GLU ASN ASP ASP GLN LEU LEU SEQRES 7 G 114 PHE CYS ASP ASP CYS ASP ARG GLY TYR HIS MET TYR CYS SEQRES 8 G 114 LEU ASN PRO PRO VAL ALA GLU PRO PRO GLU GLY SER TRP SEQRES 9 G 114 SER CYS HIS LEU CYS TRP GLU LEU LEU LYS SEQRES 1 H 26 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 H 26 KCR ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ALA MODRES 9UTH KCR B 14 LYS MODIFIED RESIDUE MODRES 9UTH KCR D 14 LYS MODIFIED RESIDUE MODRES 9UTH KCR F 14 LYS MODIFIED RESIDUE MODRES 9UTH KCR H 14 LYS MODIFIED RESIDUE HET KCR B 14 14 HET KCR D 14 14 HET KCR F 14 14 HET KCR H 14 14 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN C 401 1 HET ZN C 402 1 HET ZN C 403 1 HET ZN C 404 1 HET ZN E 401 1 HET ZN E 402 1 HET ZN E 403 1 HET ZN E 404 1 HET ZN G 401 1 HET ZN G 402 1 HET ZN G 403 1 HET ZN G 404 1 HETNAM KCR N-6-CROTONYL-L-LYSINE HETNAM ZN ZINC ION FORMUL 2 KCR 4(C10 H18 N2 O3) FORMUL 9 ZN 16(ZN 2+) FORMUL 25 HOH *145(H2 O) HELIX 1 AA1 THR A 299 LYS A 307 1 9 HELIX 2 AA2 CYS A 360 LEU A 367 1 8 HELIX 3 AA3 LYS B 4 THR B 11 1 8 HELIX 4 AA4 PRO B 16 ALA B 25 1 10 HELIX 5 AA5 THR C 299 LYS C 307 1 9 HELIX 6 AA6 ASN C 327 ASP C 329 5 3 HELIX 7 AA7 CYS C 360 LEU C 367 1 8 HELIX 8 AA8 THR D 3 THR D 11 1 9 HELIX 9 AA9 PRO D 16 ALA D 25 1 10 HELIX 10 AB1 THR E 299 LYS E 307 1 9 HELIX 11 AB2 ASN E 327 ASP E 329 5 3 HELIX 12 AB3 CYS E 360 LYS E 368 1 9 HELIX 13 AB4 THR F 3 THR F 11 1 9 HELIX 14 AB5 PRO F 16 ALA F 25 1 10 HELIX 15 AB6 THR G 299 LYS G 307 1 9 HELIX 16 AB7 ASN G 327 ASP G 329 5 3 HELIX 17 AB8 CYS G 360 LEU G 367 1 8 HELIX 18 AB9 LYS H 4 THR H 11 1 8 HELIX 19 AC1 PRO H 16 ALA H 25 1 10 SHEET 1 AA1 2 VAL A 282 SER A 283 0 SHEET 2 AA1 2 SER A 290 GLY A 291 -1 O GLY A 291 N VAL A 282 SHEET 1 AA2 3 GLY A 340 HIS A 342 0 SHEET 2 AA2 3 LEU A 331 PHE A 333 -1 N LEU A 332 O TYR A 341 SHEET 3 AA2 3 ARG B 2 THR B 3 -1 O ARG B 2 N PHE A 333 SHEET 1 AA3 2 VAL C 282 SER C 283 0 SHEET 2 AA3 2 SER C 290 GLY C 291 -1 O GLY C 291 N VAL C 282 SHEET 1 AA4 2 LEU C 331 PHE C 333 0 SHEET 2 AA4 2 GLY C 340 HIS C 342 -1 O TYR C 341 N LEU C 332 SHEET 1 AA5 2 VAL E 282 SER E 283 0 SHEET 2 AA5 2 SER E 290 GLY E 291 -1 O GLY E 291 N VAL E 282 SHEET 1 AA6 2 LEU E 331 PHE E 333 0 SHEET 2 AA6 2 GLY E 340 HIS E 342 -1 O TYR E 341 N LEU E 332 SHEET 1 AA7 2 VAL G 282 SER G 283 0 SHEET 2 AA7 2 SER G 290 GLY G 291 -1 O GLY G 291 N VAL G 282 SHEET 1 AA8 3 GLY G 340 HIS G 342 0 SHEET 2 AA8 3 LEU G 331 PHE G 333 -1 N LEU G 332 O TYR G 341 SHEET 3 AA8 3 ARG H 2 THR H 3 -1 O ARG H 2 N PHE G 333 LINK C GLY B 13 N KCR B 14 1555 1555 1.33 LINK C KCR B 14 N ALA B 15 1555 1555 1.33 LINK C GLY D 13 N KCR D 14 1555 1555 1.33 LINK C KCR D 14 N ALA D 15 1555 1555 1.33 LINK C GLY F 13 N KCR F 14 1555 1555 1.33 LINK C KCR F 14 N ALA F 15 1555 1555 1.33 LINK C GLY H 13 N KCR H 14 1555 1555 1.33 LINK C KCR H 14 N ALA H 15 1555 1555 1.33 LINK SG CYS A 262 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 265 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 284 ZN ZN A 402 1555 1555 2.34 LINK SG CYS A 287 ZN ZN A 402 1555 1555 2.32 LINK ND1 HIS A 292 ZN ZN A 401 1555 1555 2.09 LINK SG CYS A 295 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 313 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 316 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 319 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 322 ZN ZN A 403 1555 1555 2.31 LINK SG CYS A 334 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 337 ZN ZN A 404 1555 1555 2.32 LINK ND1 HIS A 342 ZN ZN A 403 1555 1555 2.10 LINK SG CYS A 345 ZN ZN A 403 1555 1555 2.30 LINK SG CYS A 360 ZN ZN A 404 1555 1555 2.31 LINK SG CYS A 363 ZN ZN A 404 1555 1555 2.32 LINK SG CYS C 262 ZN ZN C 401 1555 1555 2.32 LINK SG CYS C 265 ZN ZN C 401 1555 1555 2.32 LINK SG CYS C 284 ZN ZN C 402 1555 1555 2.33 LINK SG CYS C 287 ZN ZN C 402 1555 1555 2.33 LINK ND1 HIS C 292 ZN ZN C 401 1555 1555 2.06 LINK SG CYS C 295 ZN ZN C 401 1555 1555 2.30 LINK SG CYS C 313 ZN ZN C 402 1555 1555 2.32 LINK SG CYS C 316 ZN ZN C 402 1555 1555 2.33 LINK SG CYS C 319 ZN ZN C 403 1555 1555 2.33 LINK SG CYS C 322 ZN ZN C 403 1555 1555 2.32 LINK SG CYS C 334 ZN ZN C 404 1555 1555 2.32 LINK SG CYS C 337 ZN ZN C 404 1555 1555 2.32 LINK ND1 HIS C 342 ZN ZN C 403 1555 1555 2.10 LINK SG CYS C 345 ZN ZN C 403 1555 1555 2.33 LINK SG CYS C 360 ZN ZN C 404 1555 1555 2.34 LINK SG CYS C 363 ZN ZN C 404 1555 1555 2.32 LINK SG CYS E 262 ZN ZN E 404 1555 1555 2.33 LINK SG CYS E 265 ZN ZN E 404 1555 1555 2.32 LINK SG CYS E 284 ZN ZN E 401 1555 1555 2.34 LINK SG CYS E 287 ZN ZN E 401 1555 1555 2.33 LINK ND1 HIS E 292 ZN ZN E 404 1555 1555 2.08 LINK SG CYS E 295 ZN ZN E 404 1555 1555 2.31 LINK SG CYS E 313 ZN ZN E 401 1555 1555 2.33 LINK SG CYS E 316 ZN ZN E 401 1555 1555 2.33 LINK SG CYS E 319 ZN ZN E 402 1555 1555 2.33 LINK SG CYS E 322 ZN ZN E 402 1555 1555 2.31 LINK SG CYS E 334 ZN ZN E 403 1555 1555 2.33 LINK SG CYS E 337 ZN ZN E 403 1555 1555 2.32 LINK ND1 HIS E 342 ZN ZN E 402 1555 1555 2.11 LINK SG CYS E 345 ZN ZN E 402 1555 1555 2.31 LINK SG CYS E 360 ZN ZN E 403 1555 1555 2.32 LINK SG CYS E 363 ZN ZN E 403 1555 1555 2.31 LINK SG CYS G 262 ZN ZN G 401 1555 1555 2.33 LINK SG CYS G 265 ZN ZN G 401 1555 1555 2.31 LINK SG CYS G 284 ZN ZN G 402 1555 1555 2.33 LINK SG CYS G 287 ZN ZN G 402 1555 1555 2.32 LINK ND1 HIS G 292 ZN ZN G 401 1555 1555 2.04 LINK SG CYS G 295 ZN ZN G 401 1555 1555 2.30 LINK SG CYS G 313 ZN ZN G 402 1555 1555 2.33 LINK SG CYS G 316 ZN ZN G 402 1555 1555 2.33 LINK SG CYS G 319 ZN ZN G 403 1555 1555 2.32 LINK SG CYS G 322 ZN ZN G 403 1555 1555 2.32 LINK SG CYS G 334 ZN ZN G 404 1555 1555 2.32 LINK SG CYS G 337 ZN ZN G 404 1555 1555 2.31 LINK ND1 HIS G 342 ZN ZN G 403 1555 1555 2.11 LINK SG CYS G 345 ZN ZN G 403 1555 1555 2.31 LINK SG CYS G 360 ZN ZN G 404 1555 1555 2.32 LINK SG CYS G 363 ZN ZN G 404 1555 1555 2.32 CISPEP 1 ASN A 347 PRO A 348 0 0.52 CISPEP 2 ASN C 347 PRO C 348 0 1.98 CISPEP 3 ASN E 347 PRO E 348 0 3.32 CISPEP 4 ASN G 347 PRO G 348 0 0.85 CRYST1 70.088 84.253 111.123 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014268 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008999 0.00000 CONECT 56 4279 CONECT 81 4279 CONECT 218 4280 CONECT 237 4280 CONECT 269 4279 CONECT 292 4279 CONECT 445 4280 CONECT 468 4280 CONECT 489 4281 CONECT 511 4281 CONECT 603 4282 CONECT 625 4282 CONECT 667 4281 CONECT 696 4281 CONECT 806 4282 CONECT 830 4282 CONECT 973 975 CONECT 975 973 976 CONECT 976 975 977 987 CONECT 977 976 978 CONECT 978 977 979 CONECT 979 978 980 CONECT 980 979 981 CONECT 981 980 982 CONECT 982 981 983 984 CONECT 983 982 CONECT 984 982 985 CONECT 985 984 986 CONECT 986 985 CONECT 987 976 988 989 CONECT 988 987 CONECT 989 987 CONECT 1132 4283 CONECT 1157 4283 CONECT 1294 4284 CONECT 1313 4284 CONECT 1345 4283 CONECT 1368 4283 CONECT 1521 4284 CONECT 1544 4284 CONECT 1565 4285 CONECT 1587 4285 CONECT 1679 4286 CONECT 1701 4286 CONECT 1743 4285 CONECT 1772 4285 CONECT 1882 4286 CONECT 1906 4286 CONECT 2039 2041 CONECT 2041 2039 2042 CONECT 2042 2041 2043 2053 CONECT 2043 2042 2044 CONECT 2044 2043 2045 CONECT 2045 2044 2046 CONECT 2046 2045 2047 CONECT 2047 2046 2048 CONECT 2048 2047 2049 2050 CONECT 2049 2048 CONECT 2050 2048 2051 CONECT 2051 2050 2052 CONECT 2052 2051 CONECT 2053 2042 2054 2055 CONECT 2054 2053 CONECT 2055 2053 CONECT 2198 4290 CONECT 2223 4290 CONECT 2360 4287 CONECT 2379 4287 CONECT 2411 4290 CONECT 2434 4290 CONECT 2587 4287 CONECT 2610 4287 CONECT 2631 4288 CONECT 2653 4288 CONECT 2745 4289 CONECT 2767 4289 CONECT 2809 4288 CONECT 2838 4288 CONECT 2948 4289 CONECT 2972 4289 CONECT 3115 3117 CONECT 3117 3115 3118 CONECT 3118 3117 3119 3129 CONECT 3119 3118 3120 CONECT 3120 3119 3121 CONECT 3121 3120 3122 CONECT 3122 3121 3123 CONECT 3123 3122 3124 CONECT 3124 3123 3125 3126 CONECT 3125 3124 CONECT 3126 3124 3127 CONECT 3127 3126 3128 CONECT 3128 3127 CONECT 3129 3118 3130 3131 CONECT 3130 3129 CONECT 3131 3129 CONECT 3274 4291 CONECT 3299 4291 CONECT 3436 4292 CONECT 3455 4292 CONECT 3487 4291 CONECT 3510 4291 CONECT 3663 4292 CONECT 3686 4292 CONECT 3707 4293 CONECT 3729 4293 CONECT 3821 4294 CONECT 3843 4294 CONECT 3885 4293 CONECT 3914 4293 CONECT 4024 4294 CONECT 4048 4294 CONECT 4181 4183 CONECT 4183 4181 4184 CONECT 4184 4183 4185 4195 CONECT 4185 4184 4186 CONECT 4186 4185 4187 CONECT 4187 4186 4188 CONECT 4188 4187 4189 CONECT 4189 4188 4190 CONECT 4190 4189 4191 4192 CONECT 4191 4190 CONECT 4192 4190 4193 CONECT 4193 4192 4194 CONECT 4194 4193 CONECT 4195 4184 4196 4197 CONECT 4196 4195 CONECT 4197 4195 CONECT 4279 56 81 269 292 CONECT 4280 218 237 445 468 CONECT 4281 489 511 667 696 CONECT 4282 603 625 806 830 CONECT 4283 1132 1157 1345 1368 CONECT 4284 1294 1313 1521 1544 CONECT 4285 1565 1587 1743 1772 CONECT 4286 1679 1701 1882 1906 CONECT 4287 2360 2379 2587 2610 CONECT 4288 2631 2653 2809 2838 CONECT 4289 2745 2767 2948 2972 CONECT 4290 2198 2223 2411 2434 CONECT 4291 3274 3299 3487 3510 CONECT 4292 3436 3455 3663 3686 CONECT 4293 3707 3729 3885 3914 CONECT 4294 3821 3843 4024 4048 MASTER 415 0 20 19 18 0 0 6 4431 8 144 44 END