HEADER TRANSFERASE 06-MAY-25 9UUA TITLE STILBENE SYNTHASE OF CENCHRUS AMERICANUS IN COMPLEX WITH COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: STILBENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CENCHRUS AMERICANUS; SOURCE 3 ORGANISM_TAXID: 4543; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STILBENE SYNTHASE, STS, TYPE III POLYKETIDE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.C.POW,C.J.KHOO,Q.HAO REVDAT 1 27-MAY-26 9UUA 0 JRNL AUTH K.C.POW,C.J.KHOO,Q.HAO JRNL TITL STILBENE SYNTHASE OF CENCHRUS AMERICANUS IN COMPLEX WITH JRNL TITL 2 COENZYME A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 207794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.044 REMARK 3 FREE R VALUE TEST SET COUNT : 10481 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.44 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11596 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 70.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.5260 REMARK 3 BIN FREE R VALUE SET COUNT : 597 REMARK 3 BIN FREE R VALUE : 0.5190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6043 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 653 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.51500 REMARK 3 B22 (A**2) : -0.32700 REMARK 3 B33 (A**2) : 0.84200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6580 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6298 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8977 ; 1.867 ; 1.831 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14515 ; 0.635 ; 1.749 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 861 ; 6.254 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ; 7.839 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1133 ;12.935 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1024 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7812 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1466 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1218 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 77 ; 0.214 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3139 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 460 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3275 ; 5.652 ; 2.112 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3275 ; 5.622 ; 2.112 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4121 ; 7.885 ; 3.798 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4122 ; 7.892 ; 3.799 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3305 ; 8.906 ; 2.559 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3306 ; 8.905 ; 2.559 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4831 ;12.756 ; 4.527 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4832 ;12.754 ; 4.527 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 12878 ; 4.171 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9UUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300058509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 218886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 90.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 %(V/V) GLYCEROL, 0.9 M SODIUM REMARK 280 CITRATE TRIBASIC PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.43200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.65200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.58650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.43200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.65200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.58650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.43200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.65200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.58650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.43200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.65200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.58650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 LYS A -3 REMARK 465 LEU A -2 REMARK 465 LEU A -1 REMARK 465 GLN A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY B -6 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 LYS B -3 REMARK 465 LEU B -2 REMARK 465 LEU B -1 REMARK 465 GLN B 0 REMARK 465 MET B 1 REMARK 465 THR B 394 REMARK 465 ALA B 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 122 O HOH B 501 1.81 REMARK 500 OG1 THR A 135 O HOH A 501 2.13 REMARK 500 NE2 GLN B 122 O HOH B 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 15 CZ ARG A 15 NH1 0.083 REMARK 500 GLU A 283 CD GLU A 283 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 CYS A 344 CB - CA - C ANGL. DEV. = -13.6 DEGREES REMARK 500 ARG B 15 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG B 159 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 328 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 328 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 144.83 -170.19 REMARK 500 SER A 93 4.07 -151.20 REMARK 500 SER A 136 68.27 -118.39 REMARK 500 SER A 136 -139.21 -146.05 REMARK 500 SER A 296 -1.80 -142.27 REMARK 500 MET A 340 32.54 -96.74 REMARK 500 SER A 341 -131.58 53.76 REMARK 500 SER A 341 -131.29 53.31 REMARK 500 SER B 136 58.47 -113.54 REMARK 500 SER B 136 -139.12 -146.27 REMARK 500 MET B 340 32.28 -95.16 REMARK 500 MET B 340 33.04 -95.16 REMARK 500 SER B 341 -134.45 50.91 REMARK 500 SER B 341 -126.47 57.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 237 0.13 SIDE CHAIN REMARK 500 ARG B 328 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 806 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH B 846 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 847 DISTANCE = 6.62 ANGSTROMS DBREF 9UUA A -6 395 PDB 9UUA 9UUA -6 395 DBREF 9UUA B -6 395 PDB 9UUA 9UUA -6 395 SEQRES 1 A 402 GLY GLY SER LYS LEU LEU GLN MET ALA ALA ASN VAL THR SEQRES 2 A 402 VAL GLU GLU VAL ARG LYS ALA GLN ARG ALA GLU GLY PRO SEQRES 3 A 402 ALA THR VAL LEU ALA ILE GLY THR THR THR PRO PRO ASN SEQRES 4 A 402 CYS MET TYR GLN ALA ASP TYR ALA ASP TYR TYR PHE ARG SEQRES 5 A 402 VAL THR LYS SER GLU HIS MET THR GLU LEU LYS GLU LYS SEQRES 6 A 402 PHE LYS ARG ILE CYS HIS LYS SER MET ILE GLN LYS ARG SEQRES 7 A 402 TYR LEU HIS LEU THR GLU ASP ILE LEU LEU GLU ASN PRO SEQRES 8 A 402 ASN MET ALA SER TYR SER ALA PRO SER LEU ASN ALA ARG SEQRES 9 A 402 GLN ASP ILE LEU VAL GLU GLU VAL PRO LYS MET GLY ALA SEQRES 10 A 402 VAL ALA ALA GLU LYS ALA LEU LYS GLU TRP GLY GLN PRO SEQRES 11 A 402 ARG SER GLN ILE THR HIS ILE ILE PHE CYS THR THR SER SEQRES 12 A 402 GLY VAL ASP MET PRO GLY ALA ASP SER ARG THR ILE LYS SEQRES 13 A 402 LEU LEU GLY LEU ASN PRO SER VAL LYS ARG VAL MET LEU SEQRES 14 A 402 TYR HIS GLN GLY CSD PHE ALA GLY GLY MET VAL LEU ARG SEQRES 15 A 402 ILE ALA LYS ASP LEU ALA GLU ASN ASN ARG GLY ALA ARG SEQRES 16 A 402 VAL LEU ILE VAL CYS SER GLU ILE THR VAL VAL THR PHE SEQRES 17 A 402 ARG GLY PRO SER GLU ASP HIS LEU ASP SER LEU VAL GLY SEQRES 18 A 402 GLN ALA LEU PHE GLY ASP GLY ALA ALA ALA VAL ILE VAL SEQRES 19 A 402 GLY ALA ASP PRO ASP GLU HIS MET GLU ARG SER LEU PHE SEQRES 20 A 402 GLN MET VAL SER ALA SER GLU THR ILE LEU PRO ASN SER SEQRES 21 A 402 ASP GLY ALA ILE GLU GLY HIS LEU ARG GLU VAL GLY LEU SEQRES 22 A 402 THR PHE HIS LEU GLN GLU ARG VAL PRO GLU LEU ILE SER SEQRES 23 A 402 SER ASN ILE GLU ARG LEU LEU GLU GLU SER PHE LYS PRO SEQRES 24 A 402 LEU GLY ILE SER ASP TRP ASN SER ILE PHE TRP VAL ALA SEQRES 25 A 402 HIS PRO GLY GLY PRO ALA ILE LEU ASN ALA VAL GLU LYS SEQRES 26 A 402 LYS ALA GLY ILE ASP LYS ALA ARG LEU ARG ALA THR ARG SEQRES 27 A 402 GLN VAL LEU SER GLU TYR GLY ASN MET SER SER ALA CYS SEQRES 28 A 402 VAL LEU PHE ILE LEU ASP GLU MET ARG LYS PHE SER ALA SEQRES 29 A 402 GLU ASP GLY ARG THR THR THR GLY GLU GLY MET ASP TRP SEQRES 30 A 402 GLY VAL LEU PHE GLY PHE GLY PRO GLY LEU THR VAL GLU SEQRES 31 A 402 THR ILE VAL LEU HIS SER VAL PRO ILE ALA THR ALA SEQRES 1 B 402 GLY GLY SER LYS LEU LEU GLN MET ALA ALA ASN VAL THR SEQRES 2 B 402 VAL GLU GLU VAL ARG LYS ALA GLN ARG ALA GLU GLY PRO SEQRES 3 B 402 ALA THR VAL LEU ALA ILE GLY THR THR THR PRO PRO ASN SEQRES 4 B 402 CYS MET TYR GLN ALA ASP TYR ALA ASP TYR TYR PHE ARG SEQRES 5 B 402 VAL THR LYS SER GLU HIS MET THR GLU LEU LYS GLU LYS SEQRES 6 B 402 PHE LYS ARG ILE CYS HIS LYS SER MET ILE GLN LYS ARG SEQRES 7 B 402 TYR LEU HIS LEU THR GLU ASP ILE LEU LEU GLU ASN PRO SEQRES 8 B 402 ASN MET ALA SER TYR SER ALA PRO SER LEU ASN ALA ARG SEQRES 9 B 402 GLN ASP ILE LEU VAL GLU GLU VAL PRO LYS MET GLY ALA SEQRES 10 B 402 VAL ALA ALA GLU LYS ALA LEU LYS GLU TRP GLY GLN PRO SEQRES 11 B 402 ARG SER GLN ILE THR HIS ILE ILE PHE CYS THR THR SER SEQRES 12 B 402 GLY VAL ASP MET PRO GLY ALA ASP SER ARG THR ILE LYS SEQRES 13 B 402 LEU LEU GLY LEU ASN PRO SER VAL LYS ARG VAL MET LEU SEQRES 14 B 402 TYR HIS GLN GLY CSD PHE ALA GLY GLY MET VAL LEU ARG SEQRES 15 B 402 ILE ALA LYS ASP LEU ALA GLU ASN ASN ARG GLY ALA ARG SEQRES 16 B 402 VAL LEU ILE VAL CYS SER GLU ILE THR VAL VAL THR PHE SEQRES 17 B 402 ARG GLY PRO SER GLU ASP HIS LEU ASP SER LEU VAL GLY SEQRES 18 B 402 GLN ALA LEU PHE GLY ASP GLY ALA ALA ALA VAL ILE VAL SEQRES 19 B 402 GLY ALA ASP PRO ASP GLU HIS MET GLU ARG SER LEU PHE SEQRES 20 B 402 GLN MET VAL SER ALA SER GLU THR ILE LEU PRO ASN SER SEQRES 21 B 402 ASP GLY ALA ILE GLU GLY HIS LEU ARG GLU VAL GLY LEU SEQRES 22 B 402 THR PHE HIS LEU GLN GLU ARG VAL PRO GLU LEU ILE SER SEQRES 23 B 402 SER ASN ILE GLU ARG LEU LEU GLU GLU SER PHE LYS PRO SEQRES 24 B 402 LEU GLY ILE SER ASP TRP ASN SER ILE PHE TRP VAL ALA SEQRES 25 B 402 HIS PRO GLY GLY PRO ALA ILE LEU ASN ALA VAL GLU LYS SEQRES 26 B 402 LYS ALA GLY ILE ASP LYS ALA ARG LEU ARG ALA THR ARG SEQRES 27 B 402 GLN VAL LEU SER GLU TYR GLY ASN MET SER SER ALA CYS SEQRES 28 B 402 VAL LEU PHE ILE LEU ASP GLU MET ARG LYS PHE SER ALA SEQRES 29 B 402 GLU ASP GLY ARG THR THR THR GLY GLU GLY MET ASP TRP SEQRES 30 B 402 GLY VAL LEU PHE GLY PHE GLY PRO GLY LEU THR VAL GLU SEQRES 31 B 402 THR ILE VAL LEU HIS SER VAL PRO ILE ALA THR ALA HET CSD A 167 8 HET CSD B 167 8 HET COA A 401 48 HET GOL A 402 6 HET GOL A 403 6 HET COA B 401 48 HETNAM CSD 3-SULFINOALANINE HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSD 2(C3 H7 N O4 S) FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 7 HOH *653(H2 O) HELIX 1 AA1 THR A 6 ARG A 15 1 10 HELIX 2 AA2 GLN A 36 THR A 47 1 12 HELIX 3 AA3 MET A 52 SER A 66 1 15 HELIX 4 AA4 THR A 76 ASN A 83 1 8 HELIX 5 AA5 ASN A 83 SER A 88 1 6 HELIX 6 AA6 SER A 93 GLY A 121 1 29 HELIX 7 AA7 PRO A 123 ILE A 127 5 5 HELIX 8 AA8 GLY A 142 GLY A 152 1 11 HELIX 9 AA9 PHE A 168 ASN A 183 1 16 HELIX 10 AB1 ILE A 196 THR A 200 5 5 HELIX 11 AB2 HIS A 208 PHE A 218 1 11 HELIX 12 AB3 ARG A 273 LYS A 291 1 19 HELIX 13 AB4 PRO A 292 GLY A 294 5 3 HELIX 14 AB5 ASP A 297 ILE A 301 5 5 HELIX 15 AB6 GLY A 309 GLY A 321 1 13 HELIX 16 AB7 ASP A 323 ARG A 326 5 4 HELIX 17 AB8 LEU A 327 GLY A 338 1 12 HELIX 18 AB9 MET A 340 SER A 342 5 3 HELIX 19 AC1 ALA A 343 ASP A 359 1 17 HELIX 20 AC2 THR B 6 ARG B 15 1 10 HELIX 21 AC3 GLN B 36 THR B 47 1 12 HELIX 22 AC4 MET B 52 SER B 66 1 15 HELIX 23 AC5 THR B 76 ASN B 83 1 8 HELIX 24 AC6 PRO B 84 SER B 88 5 5 HELIX 25 AC7 SER B 93 TRP B 120 1 28 HELIX 26 AC8 PRO B 123 ILE B 127 5 5 HELIX 27 AC9 GLY B 142 GLY B 152 1 11 HELIX 28 AD1 PHE B 168 ASN B 183 1 16 HELIX 29 AD2 ILE B 196 THR B 200 5 5 HELIX 30 AD3 HIS B 208 PHE B 218 1 11 HELIX 31 AD4 ARG B 273 LYS B 291 1 19 HELIX 32 AD5 PRO B 292 GLY B 294 5 3 HELIX 33 AD6 ASP B 297 ILE B 301 5 5 HELIX 34 AD7 GLY B 309 GLY B 321 1 13 HELIX 35 AD8 ASP B 323 ARG B 326 5 4 HELIX 36 AD9 LEU B 327 GLY B 338 1 12 HELIX 37 AE1 MET B 340 SER B 342 5 3 HELIX 38 AE2 ALA B 343 GLY B 360 1 18 SHEET 1 AA1 9 LYS A 158 TYR A 163 0 SHEET 2 AA1 9 HIS A 129 THR A 134 1 N PHE A 132 O LEU A 162 SHEET 3 AA1 9 ARG A 188 GLU A 195 1 O VAL A 192 N ILE A 131 SHEET 4 AA1 9 GLY A 221 GLY A 228 -1 O VAL A 225 N ILE A 191 SHEET 5 AA1 9 THR A 21 THR A 28 -1 N LEU A 23 O ILE A 226 SHEET 6 AA1 9 PHE A 240 ILE A 249 -1 O PHE A 240 N VAL A 22 SHEET 7 AA1 9 THR A 381 SER A 389 -1 O HIS A 388 N GLN A 241 SHEET 8 AA1 9 TRP A 370 GLY A 377 -1 N LEU A 373 O ILE A 385 SHEET 9 AA1 9 PHE A 302 ALA A 305 1 N VAL A 304 O PHE A 374 SHEET 1 AA2 2 CYS A 33 TYR A 35 0 SHEET 2 AA2 2 LYS A 70 TYR A 72 -1 O ARG A 71 N MET A 34 SHEET 1 AA3 3 ASP A 139 MET A 140 0 SHEET 2 AA3 3 ILE B 257 ARG B 262 -1 O GLY B 259 N MET A 140 SHEET 3 AA3 3 GLY B 265 LEU B 270 -1 O THR B 267 N HIS B 260 SHEET 1 AA4 3 GLY A 265 LEU A 270 0 SHEET 2 AA4 3 ILE A 257 ARG A 262 -1 N HIS A 260 O THR A 267 SHEET 3 AA4 3 ASP B 139 MET B 140 -1 O MET B 140 N GLY A 259 SHEET 1 AA5 9 LYS B 158 TYR B 163 0 SHEET 2 AA5 9 HIS B 129 THR B 134 1 N PHE B 132 O LEU B 162 SHEET 3 AA5 9 ARG B 188 GLU B 195 1 O VAL B 192 N CYS B 133 SHEET 4 AA5 9 GLY B 221 GLY B 228 -1 O VAL B 225 N ILE B 191 SHEET 5 AA5 9 THR B 21 THR B 28 -1 N LEU B 23 O ILE B 226 SHEET 6 AA5 9 PHE B 240 ILE B 249 -1 O PHE B 240 N VAL B 22 SHEET 7 AA5 9 THR B 381 SER B 389 -1 O HIS B 388 N GLN B 241 SHEET 8 AA5 9 TRP B 370 GLY B 377 -1 N LEU B 373 O ILE B 385 SHEET 9 AA5 9 PHE B 302 ALA B 305 1 N VAL B 304 O VAL B 372 SHEET 1 AA6 2 CYS B 33 TYR B 35 0 SHEET 2 AA6 2 LYS B 70 TYR B 72 -1 O ARG B 71 N MET B 34 LINK C GLY A 166 N CSD A 167 1555 1555 1.33 LINK C CSD A 167 N PHE A 168 1555 1555 1.34 LINK C GLY B 166 N CSD B 167 1555 1555 1.32 LINK C CSD B 167 N PHE B 168 1555 1555 1.34 CISPEP 1 MET A 140 PRO A 141 0 -3.10 CISPEP 2 GLY A 379 LEU A 380 0 3.69 CISPEP 3 MET B 140 PRO B 141 0 -5.89 CISPEP 4 GLY B 379 LEU B 380 0 0.79 CRYST1 104.864 137.304 179.173 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009536 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005581 0.00000 CONECT 1357 1359 CONECT 1359 1357 1360 CONECT 1360 1359 1361 1363 CONECT 1361 1360 1362 CONECT 1362 1361 1365 1366 CONECT 1363 1360 1364 1367 CONECT 1364 1363 CONECT 1365 1362 CONECT 1366 1362 CONECT 1367 1363 CONECT 4520 4522 CONECT 4522 4520 4523 CONECT 4523 4522 4524 4526 CONECT 4524 4523 4525 CONECT 4525 4524 4528 4529 CONECT 4526 4523 4527 4530 CONECT 4527 4526 CONECT 4528 4525 CONECT 4529 4525 CONECT 4530 4526 CONECT 6316 6317 6321 CONECT 6317 6316 6318 CONECT 6318 6317 6319 CONECT 6319 6318 6320 6325 CONECT 6320 6319 6321 6323 CONECT 6321 6316 6320 6322 CONECT 6322 6321 CONECT 6323 6320 6324 CONECT 6324 6323 6325 CONECT 6325 6319 6324 6326 CONECT 6326 6325 6327 6336 CONECT 6327 6326 6328 6329 CONECT 6328 6327 CONECT 6329 6327 6330 6335 CONECT 6330 6329 6331 CONECT 6331 6330 6332 6333 6334 CONECT 6332 6331 CONECT 6333 6331 CONECT 6334 6331 CONECT 6335 6329 6336 6337 CONECT 6336 6326 6335 CONECT 6337 6335 6338 CONECT 6338 6337 6339 CONECT 6339 6338 6340 6341 6342 CONECT 6340 6339 CONECT 6341 6339 CONECT 6342 6339 6343 CONECT 6343 6342 6344 6345 6346 CONECT 6344 6343 CONECT 6345 6343 CONECT 6346 6343 6348 CONECT 6347 6348 6349 6350 6351 CONECT 6348 6346 6347 CONECT 6349 6347 CONECT 6350 6347 CONECT 6351 6347 6352 6353 CONECT 6352 6351 CONECT 6353 6351 6354 6355 CONECT 6354 6353 CONECT 6355 6353 6356 CONECT 6356 6355 6357 CONECT 6357 6356 6358 CONECT 6358 6357 6359 6360 CONECT 6359 6358 CONECT 6360 6358 6361 CONECT 6361 6360 6362 CONECT 6362 6361 6363 CONECT 6363 6362 CONECT 6364 6365 6366 CONECT 6365 6364 CONECT 6366 6364 6367 6368 CONECT 6367 6366 CONECT 6368 6366 6369 CONECT 6369 6368 CONECT 6370 6371 6372 CONECT 6371 6370 CONECT 6372 6370 6373 6374 CONECT 6373 6372 CONECT 6374 6372 6375 CONECT 6375 6374 CONECT 6376 6377 6381 CONECT 6377 6376 6378 CONECT 6378 6377 6379 CONECT 6379 6378 6380 6385 CONECT 6380 6379 6381 6383 CONECT 6381 6376 6380 6382 CONECT 6382 6381 CONECT 6383 6380 6384 CONECT 6384 6383 6385 CONECT 6385 6379 6384 6386 CONECT 6386 6385 6387 6396 CONECT 6387 6386 6388 6389 CONECT 6388 6387 CONECT 6389 6387 6390 6395 CONECT 6390 6389 6391 CONECT 6391 6390 6392 6393 6394 CONECT 6392 6391 CONECT 6393 6391 CONECT 6394 6391 CONECT 6395 6389 6396 6397 CONECT 6396 6386 6395 CONECT 6397 6395 6398 CONECT 6398 6397 6399 CONECT 6399 6398 6400 6401 6402 CONECT 6400 6399 CONECT 6401 6399 CONECT 6402 6399 6403 CONECT 6403 6402 6404 6405 6406 CONECT 6404 6403 CONECT 6405 6403 CONECT 6406 6403 6408 CONECT 6407 6408 6409 6410 6411 CONECT 6408 6406 6407 CONECT 6409 6407 CONECT 6410 6407 CONECT 6411 6407 6412 6413 CONECT 6412 6411 CONECT 6413 6411 6414 6415 CONECT 6414 6413 CONECT 6415 6413 6416 CONECT 6416 6415 6417 CONECT 6417 6416 6418 CONECT 6418 6417 6419 6420 CONECT 6419 6418 CONECT 6420 6418 6421 CONECT 6421 6420 6422 CONECT 6422 6421 6423 CONECT 6423 6422 MASTER 402 0 6 38 28 0 0 6 6804 2 128 62 END