HEADER TRANSFERASE 06-MAY-25 9UUE TITLE STILBENE SYNTHASE OF CENCHRUS AMERICANUS CO-CRYSTALLIZED WITH P- TITLE 2 COUMAROYL-COA AND MALONYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: STILBENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CENCHRUS AMERICANUS; SOURCE 3 ORGANISM_TAXID: 4543; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STILBENE SYNTHASE, STS, TYPE III POLYKETIDE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.C.POW,C.J.KHOO,Q.HAO REVDAT 1 27-MAY-26 9UUE 0 JRNL AUTH K.C.POW,C.J.KHOO,Q.HAO JRNL TITL STILBENE SYNTHASE OF CENCHRUS AMERICANUS CO-CRYSTALLIZED JRNL TITL 2 WITH P-COUMAROYL-COA AND MALONYL-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 (REFMACAT 0.4.100) REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 126334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.662 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9093 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 126 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.34600 REMARK 3 B22 (A**2) : 0.89000 REMARK 3 B33 (A**2) : 0.45600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.677 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6592 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6311 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8979 ; 1.944 ; 1.825 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14554 ; 0.650 ; 1.748 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 860 ; 6.669 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ; 7.770 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1135 ;13.584 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1023 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7806 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1456 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1248 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 86 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3145 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 361 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3288 ; 2.406 ; 2.519 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3288 ; 2.407 ; 2.519 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4135 ; 3.267 ; 4.512 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4136 ; 3.271 ; 4.514 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3304 ; 4.311 ; 2.990 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3305 ; 4.314 ; 2.991 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4822 ; 6.123 ; 5.278 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4823 ; 6.123 ; 5.279 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9UUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300058614. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126334 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 47.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.39 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.25 M SODIUM CITRATE TRIBASIC, 0.1 M REMARK 280 HEPES PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.27000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.07500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.98000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.27000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.07500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.98000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.27000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.07500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.98000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.27000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.07500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 47 O HOH A 501 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 15 CZ ARG A 15 NH2 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 15 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 326 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 326 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 MET B 140 CG - SD - CE ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG B 185 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 MET B 235 CG - SD - CE ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG B 326 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 328 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 136 66.67 -118.75 REMARK 500 SER A 136 -136.98 -138.15 REMARK 500 SER A 296 -0.12 -146.77 REMARK 500 MET A 340 34.69 -93.79 REMARK 500 SER A 341 -131.64 45.45 REMARK 500 SER B 90 -30.02 -131.88 REMARK 500 SER B 136 71.19 -119.02 REMARK 500 SER B 136 -131.93 -146.20 REMARK 500 ASP B 139 160.71 175.07 REMARK 500 SER B 341 -132.23 52.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 71 0.09 SIDE CHAIN REMARK 500 ARG A 326 0.08 SIDE CHAIN REMARK 500 ARG B 188 0.08 SIDE CHAIN REMARK 500 ARG B 237 0.10 SIDE CHAIN REMARK 500 ARG B 326 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9UUE A -2 393 PDB 9UUE 9UUE -2 393 DBREF 9UUE B -2 393 PDB 9UUE 9UUE -2 393 SEQRES 1 A 396 GLY GLY SER MET ALA ALA ASN VAL THR VAL GLU GLU VAL SEQRES 2 A 396 ARG LYS ALA GLN ARG ALA GLU GLY PRO ALA THR VAL LEU SEQRES 3 A 396 ALA ILE GLY THR THR THR PRO PRO ASN CYS MET TYR GLN SEQRES 4 A 396 ALA ASP TYR ALA ASP TYR TYR PHE ARG VAL THR LYS SER SEQRES 5 A 396 GLU HIS MET THR GLU LEU LYS GLU LYS PHE LYS ARG ILE SEQRES 6 A 396 CYS HIS LYS SER MET ILE GLN LYS ARG TYR LEU HIS LEU SEQRES 7 A 396 THR GLU ASP ILE LEU LEU GLU ASN PRO ASN MET ALA SER SEQRES 8 A 396 TYR SER ALA PRO SER LEU ASN ALA ARG GLN ASP ILE LEU SEQRES 9 A 396 VAL GLU GLU VAL PRO LYS MET GLY ALA VAL ALA ALA GLU SEQRES 10 A 396 LYS ALA LEU LYS GLU TRP GLY GLN PRO ARG SER GLN ILE SEQRES 11 A 396 THR HIS ILE ILE PHE CYS THR THR SER GLY VAL ASP MET SEQRES 12 A 396 PRO GLY ALA ASP SER ARG THR ILE LYS LEU LEU GLY LEU SEQRES 13 A 396 ASN PRO SER VAL LYS ARG VAL MET LEU TYR HIS GLN GLY SEQRES 14 A 396 CYS PHE ALA GLY GLY MET VAL LEU ARG ILE ALA LYS ASP SEQRES 15 A 396 LEU ALA GLU ASN ASN ARG GLY ALA ARG VAL LEU ILE VAL SEQRES 16 A 396 CYS SER GLU ILE THR VAL VAL THR PHE ARG GLY PRO SER SEQRES 17 A 396 GLU ASP HIS LEU ASP SER LEU VAL GLY GLN ALA LEU PHE SEQRES 18 A 396 GLY ASP GLY ALA ALA ALA VAL ILE VAL GLY ALA ASP PRO SEQRES 19 A 396 ASP GLU HIS MET GLU ARG SER LEU PHE GLN MET VAL SER SEQRES 20 A 396 ALA SER GLU THR ILE LEU PRO ASN SER ASP GLY ALA ILE SEQRES 21 A 396 GLU GLY HIS LEU ARG GLU VAL GLY LEU THR PHE HIS LEU SEQRES 22 A 396 GLN GLU ARG VAL PRO GLU LEU ILE SER SER ASN ILE GLU SEQRES 23 A 396 ARG LEU LEU GLU GLU SER PHE LYS PRO LEU GLY ILE SER SEQRES 24 A 396 ASP TRP ASN SER ILE PHE TRP VAL ALA HIS PRO GLY GLY SEQRES 25 A 396 PRO ALA ILE LEU ASN ALA VAL GLU LYS LYS ALA GLY ILE SEQRES 26 A 396 ASP LYS ALA ARG LEU ARG ALA THR ARG GLN VAL LEU SER SEQRES 27 A 396 GLU TYR GLY ASN MET SER SER ALA CYS VAL LEU PHE ILE SEQRES 28 A 396 LEU ASP GLU MET ARG LYS PHE SER ALA GLU ASP GLY ARG SEQRES 29 A 396 THR THR THR GLY GLU GLY MET ASP TRP GLY VAL LEU PHE SEQRES 30 A 396 GLY PHE GLY PRO GLY LEU THR VAL GLU THR ILE VAL LEU SEQRES 31 A 396 HIS SER VAL PRO ILE ALA SEQRES 1 B 396 GLY GLY SER MET ALA ALA ASN VAL THR VAL GLU GLU VAL SEQRES 2 B 396 ARG LYS ALA GLN ARG ALA GLU GLY PRO ALA THR VAL LEU SEQRES 3 B 396 ALA ILE GLY THR THR THR PRO PRO ASN CYS MET TYR GLN SEQRES 4 B 396 ALA ASP TYR ALA ASP TYR TYR PHE ARG VAL THR LYS SER SEQRES 5 B 396 GLU HIS MET THR GLU LEU LYS GLU LYS PHE LYS ARG ILE SEQRES 6 B 396 CYS HIS LYS SER MET ILE GLN LYS ARG TYR LEU HIS LEU SEQRES 7 B 396 THR GLU ASP ILE LEU LEU GLU ASN PRO ASN MET ALA SER SEQRES 8 B 396 TYR SER ALA PRO SER LEU ASN ALA ARG GLN ASP ILE LEU SEQRES 9 B 396 VAL GLU GLU VAL PRO LYS MET GLY ALA VAL ALA ALA GLU SEQRES 10 B 396 LYS ALA LEU LYS GLU TRP GLY GLN PRO ARG SER GLN ILE SEQRES 11 B 396 THR HIS ILE ILE PHE CYS THR THR SER GLY VAL ASP MET SEQRES 12 B 396 PRO GLY ALA ASP SER ARG THR ILE LYS LEU LEU GLY LEU SEQRES 13 B 396 ASN PRO SER VAL LYS ARG VAL MET LEU TYR HIS GLN GLY SEQRES 14 B 396 CYS PHE ALA GLY GLY MET VAL LEU ARG ILE ALA LYS ASP SEQRES 15 B 396 LEU ALA GLU ASN ASN ARG GLY ALA ARG VAL LEU ILE VAL SEQRES 16 B 396 CYS SER GLU ILE THR VAL VAL THR PHE ARG GLY PRO SER SEQRES 17 B 396 GLU ASP HIS LEU ASP SER LEU VAL GLY GLN ALA LEU PHE SEQRES 18 B 396 GLY ASP GLY ALA ALA ALA VAL ILE VAL GLY ALA ASP PRO SEQRES 19 B 396 ASP GLU HIS MET GLU ARG SER LEU PHE GLN MET VAL SER SEQRES 20 B 396 ALA SER GLU THR ILE LEU PRO ASN SER ASP GLY ALA ILE SEQRES 21 B 396 GLU GLY HIS LEU ARG GLU VAL GLY LEU THR PHE HIS LEU SEQRES 22 B 396 GLN GLU ARG VAL PRO GLU LEU ILE SER SER ASN ILE GLU SEQRES 23 B 396 ARG LEU LEU GLU GLU SER PHE LYS PRO LEU GLY ILE SER SEQRES 24 B 396 ASP TRP ASN SER ILE PHE TRP VAL ALA HIS PRO GLY GLY SEQRES 25 B 396 PRO ALA ILE LEU ASN ALA VAL GLU LYS LYS ALA GLY ILE SEQRES 26 B 396 ASP LYS ALA ARG LEU ARG ALA THR ARG GLN VAL LEU SER SEQRES 27 B 396 GLU TYR GLY ASN MET SER SER ALA CYS VAL LEU PHE ILE SEQRES 28 B 396 LEU ASP GLU MET ARG LYS PHE SER ALA GLU ASP GLY ARG SEQRES 29 B 396 THR THR THR GLY GLU GLY MET ASP TRP GLY VAL LEU PHE SEQRES 30 B 396 GLY PHE GLY PRO GLY LEU THR VAL GLU THR ILE VAL LEU SEQRES 31 B 396 HIS SER VAL PRO ILE ALA HET COA A 401 48 HET GOL A 402 6 HET GOL A 403 6 HET COA B 401 48 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HETNAM COA COENZYME A HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 10 HOH *354(H2 O) HELIX 1 AA1 THR A 6 ARG A 15 1 10 HELIX 2 AA2 ASP A 38 THR A 47 1 10 HELIX 3 AA3 MET A 52 SER A 66 1 15 HELIX 4 AA4 THR A 76 ASN A 83 1 8 HELIX 5 AA5 PRO A 84 SER A 88 5 5 HELIX 6 AA6 SER A 93 GLY A 121 1 29 HELIX 7 AA7 PRO A 123 ILE A 127 5 5 HELIX 8 AA8 GLY A 142 GLY A 152 1 11 HELIX 9 AA9 PHE A 168 ASN A 183 1 16 HELIX 10 AB1 ILE A 196 THR A 200 5 5 HELIX 11 AB2 HIS A 208 PHE A 218 1 11 HELIX 12 AB3 ARG A 273 LYS A 291 1 19 HELIX 13 AB4 PRO A 292 GLY A 294 5 3 HELIX 14 AB5 ASP A 297 ILE A 301 5 5 HELIX 15 AB6 GLY A 309 GLY A 321 1 13 HELIX 16 AB7 ASP A 323 ARG A 326 5 4 HELIX 17 AB8 LEU A 327 GLY A 338 1 12 HELIX 18 AB9 MET A 340 SER A 342 5 3 HELIX 19 AC1 ALA A 343 ASP A 359 1 17 HELIX 20 AC2 THR B 6 ARG B 15 1 10 HELIX 21 AC3 GLN B 36 THR B 47 1 12 HELIX 22 AC4 MET B 52 SER B 66 1 15 HELIX 23 AC5 THR B 76 ASN B 83 1 8 HELIX 24 AC6 PRO B 84 SER B 88 5 5 HELIX 25 AC7 SER B 93 TRP B 120 1 28 HELIX 26 AC8 PRO B 123 ILE B 127 5 5 HELIX 27 AC9 GLY B 142 GLY B 152 1 11 HELIX 28 AD1 PHE B 168 ASN B 183 1 16 HELIX 29 AD2 ILE B 196 THR B 200 5 5 HELIX 30 AD3 HIS B 208 PHE B 218 1 11 HELIX 31 AD4 ARG B 273 LYS B 291 1 19 HELIX 32 AD5 PRO B 292 GLY B 294 5 3 HELIX 33 AD6 ASP B 297 ILE B 301 5 5 HELIX 34 AD7 GLY B 309 GLY B 321 1 13 HELIX 35 AD8 ASP B 323 ARG B 326 5 4 HELIX 36 AD9 LEU B 327 GLY B 338 1 12 HELIX 37 AE1 MET B 340 SER B 342 5 3 HELIX 38 AE2 ALA B 343 GLY B 360 1 18 SHEET 1 AA1 9 LYS A 158 TYR A 163 0 SHEET 2 AA1 9 HIS A 129 THR A 134 1 N PHE A 132 O LEU A 162 SHEET 3 AA1 9 ARG A 188 GLU A 195 1 O VAL A 192 N CYS A 133 SHEET 4 AA1 9 GLY A 221 GLY A 228 -1 O VAL A 225 N ILE A 191 SHEET 5 AA1 9 THR A 21 THR A 28 -1 N LEU A 23 O ILE A 226 SHEET 6 AA1 9 PHE A 240 ILE A 249 -1 O PHE A 240 N VAL A 22 SHEET 7 AA1 9 THR A 381 SER A 389 -1 O THR A 384 N SER A 246 SHEET 8 AA1 9 TRP A 370 GLY A 377 -1 N LEU A 373 O ILE A 385 SHEET 9 AA1 9 PHE A 302 ALA A 305 1 N VAL A 304 O PHE A 374 SHEET 1 AA2 2 CYS A 33 TYR A 35 0 SHEET 2 AA2 2 LYS A 70 TYR A 72 -1 O ARG A 71 N MET A 34 SHEET 1 AA3 2 ILE A 257 ARG A 262 0 SHEET 2 AA3 2 GLY A 265 LEU A 270 -1 O THR A 267 N HIS A 260 SHEET 1 AA4 9 LYS B 158 TYR B 163 0 SHEET 2 AA4 9 HIS B 129 THR B 134 1 N PHE B 132 O LEU B 162 SHEET 3 AA4 9 ARG B 188 GLU B 195 1 O VAL B 192 N ILE B 131 SHEET 4 AA4 9 GLY B 221 GLY B 228 -1 O VAL B 225 N ILE B 191 SHEET 5 AA4 9 THR B 21 THR B 28 -1 N LEU B 23 O ILE B 226 SHEET 6 AA4 9 PHE B 240 ILE B 249 -1 O PHE B 240 N VAL B 22 SHEET 7 AA4 9 THR B 381 SER B 389 -1 O HIS B 388 N GLN B 241 SHEET 8 AA4 9 TRP B 370 GLY B 377 -1 N GLY B 371 O LEU B 387 SHEET 9 AA4 9 PHE B 302 ALA B 305 1 N VAL B 304 O PHE B 374 SHEET 1 AA5 2 CYS B 33 TYR B 35 0 SHEET 2 AA5 2 LYS B 70 TYR B 72 -1 O ARG B 71 N MET B 34 SHEET 1 AA6 2 ILE B 257 ARG B 262 0 SHEET 2 AA6 2 GLY B 265 LEU B 270 -1 O THR B 267 N HIS B 260 CISPEP 1 MET A 140 PRO A 141 0 -3.64 CISPEP 2 GLY A 379 LEU A 380 0 1.66 CISPEP 3 MET B 140 PRO B 141 0 -4.46 CISPEP 4 GLY B 379 LEU B 380 0 1.33 CRYST1 104.540 138.150 179.960 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007239 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005557 0.00000 CONECT 6319 6320 6324 CONECT 6320 6319 6321 CONECT 6321 6320 6322 CONECT 6322 6321 6323 6328 CONECT 6323 6322 6324 6326 CONECT 6324 6319 6323 6325 CONECT 6325 6324 CONECT 6326 6323 6327 CONECT 6327 6326 6328 CONECT 6328 6322 6327 6329 CONECT 6329 6328 6330 6339 CONECT 6330 6329 6331 6332 CONECT 6331 6330 CONECT 6332 6330 6333 6338 CONECT 6333 6332 6334 CONECT 6334 6333 6335 6336 6337 CONECT 6335 6334 CONECT 6336 6334 CONECT 6337 6334 CONECT 6338 6332 6339 6340 CONECT 6339 6329 6338 CONECT 6340 6338 6341 CONECT 6341 6340 6342 CONECT 6342 6341 6343 6344 6345 CONECT 6343 6342 CONECT 6344 6342 CONECT 6345 6342 6346 CONECT 6346 6345 6347 6348 6349 CONECT 6347 6346 CONECT 6348 6346 CONECT 6349 6346 6351 CONECT 6350 6351 6352 6353 6354 CONECT 6351 6349 6350 CONECT 6352 6350 CONECT 6353 6350 CONECT 6354 6350 6355 6356 CONECT 6355 6354 CONECT 6356 6354 6357 6358 CONECT 6357 6356 CONECT 6358 6356 6359 CONECT 6359 6358 6360 CONECT 6360 6359 6361 CONECT 6361 6360 6362 6363 CONECT 6362 6361 CONECT 6363 6361 6364 CONECT 6364 6363 6365 CONECT 6365 6364 6366 CONECT 6366 6365 CONECT 6367 6368 6369 CONECT 6368 6367 CONECT 6369 6367 6370 6371 CONECT 6370 6369 CONECT 6371 6369 6372 CONECT 6372 6371 CONECT 6373 6374 6375 CONECT 6374 6373 CONECT 6375 6373 6376 6377 CONECT 6376 6375 CONECT 6377 6375 6378 CONECT 6378 6377 CONECT 6379 6380 6384 CONECT 6380 6379 6381 CONECT 6381 6380 6382 CONECT 6382 6381 6383 6388 CONECT 6383 6382 6384 6386 CONECT 6384 6379 6383 6385 CONECT 6385 6384 CONECT 6386 6383 6387 CONECT 6387 6386 6388 CONECT 6388 6382 6387 6389 CONECT 6389 6388 6390 6399 CONECT 6390 6389 6391 6392 CONECT 6391 6390 CONECT 6392 6390 6393 6398 CONECT 6393 6392 6394 CONECT 6394 6393 6395 6396 6397 CONECT 6395 6394 CONECT 6396 6394 CONECT 6397 6394 CONECT 6398 6392 6399 6400 CONECT 6399 6389 6398 CONECT 6400 6398 6401 CONECT 6401 6400 6402 CONECT 6402 6401 6403 6404 6405 CONECT 6403 6402 CONECT 6404 6402 CONECT 6405 6402 6406 CONECT 6406 6405 6407 6408 6409 CONECT 6407 6406 CONECT 6408 6406 CONECT 6409 6406 6411 CONECT 6410 6411 6412 6413 6414 CONECT 6411 6409 6410 CONECT 6412 6410 CONECT 6413 6410 CONECT 6414 6410 6415 6416 CONECT 6415 6414 CONECT 6416 6414 6417 6418 CONECT 6417 6416 CONECT 6418 6416 6419 CONECT 6419 6418 6420 CONECT 6420 6419 6421 CONECT 6421 6420 6422 6423 CONECT 6422 6421 CONECT 6423 6421 6424 CONECT 6424 6423 6425 CONECT 6425 6424 6426 CONECT 6426 6425 CONECT 6427 6428 6429 CONECT 6428 6427 CONECT 6429 6427 6430 6431 CONECT 6430 6429 CONECT 6431 6429 6432 CONECT 6432 6431 CONECT 6433 6434 6435 CONECT 6434 6433 CONECT 6435 6433 6436 6437 CONECT 6436 6435 CONECT 6437 6435 6438 CONECT 6438 6437 CONECT 6439 6440 6441 CONECT 6440 6439 CONECT 6441 6439 6442 6443 CONECT 6442 6441 CONECT 6443 6441 6444 CONECT 6444 6443 MASTER 366 0 7 38 26 0 0 6 6552 2 126 62 END