HEADER VIRAL PROTEIN/IMMUNE SYSTEM 06-MAY-25 9UUF TITLE CRYSTAL STRUCTURE OF NANOBODY TNB438 WITH MERS-COV RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: B, D; COMPND 4 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TNB438; COMPND 8 CHAIN: A, C; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MIDDLE EAST RESPIRATORY SYNDROME-RELATED SOURCE 3 CORONAVIRUS; SOURCE 4 ORGANISM_TAXID: 1335626; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS MERS-COV, NANOBODY, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE KEYWDS 2 SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,Z.LIN REVDAT 1 27-MAY-26 9UUF 0 JRNL AUTH X.WANG,Z.LIN JRNL TITL CRYSTAL STRUCTURE OF NANOBODY TNB438 WITH MERS-COV RBD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 4.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 5575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.305 REMARK 3 R VALUE (WORKING SET) : 0.304 REMARK 3 FREE R VALUE : 0.323 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.510 REMARK 3 FREE R VALUE TEST SET COUNT : 307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.0900 - 5.5000 1.00 2729 155 0.3026 0.3111 REMARK 3 2 5.5000 - 4.3700 0.96 2539 152 0.3060 0.3391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.540 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4395 REMARK 3 ANGLE : 0.941 6001 REMARK 3 CHIRALITY : 0.056 729 REMARK 3 PLANARITY : 0.006 757 REMARK 3 DIHEDRAL : 7.306 616 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9UUF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-MAY-25. REMARK 100 THE DEPOSITION ID IS D_1300058909. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5575 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.370 REMARK 200 RESOLUTION RANGE LOW (A) : 49.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA HEPES PH7.5, 2.0 M AMMONIUM REMARK 280 FORMATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 96.33200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.23800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 96.33200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.23800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE B 428 REMARK 465 SER B 429 REMARK 465 PRO B 430 REMARK 465 ALA B 431 REMARK 465 ALA B 432 REMARK 465 LEU B 456 REMARK 465 SER B 457 REMARK 465 VAL B 458 REMARK 465 SER B 459 REMARK 465 GLN D 427 REMARK 465 ILE D 428 REMARK 465 SER D 429 REMARK 465 PRO D 430 REMARK 465 ALA D 431 REMARK 465 ALA D 432 REMARK 465 CYS D 437 REMARK 465 TYR D 438 REMARK 465 SER D 439 REMARK 465 LEU D 456 REMARK 465 SER D 457 REMARK 465 VAL D 458 REMARK 465 SER D 459 REMARK 465 SER D 460 REMARK 465 ALA D 461 REMARK 465 GLY D 462 REMARK 465 VAL D 584 REMARK 465 CYS D 585 REMARK 465 PRO D 586 REMARK 465 GLU C 6 REMARK 465 SER C 7 REMARK 465 GLY C 8 REMARK 465 GLY C 9 REMARK 465 GLY C 10 REMARK 465 LEU C 11 REMARK 465 VAL C 12 REMARK 465 GLN C 13 REMARK 465 PRO C 14 REMARK 465 GLY C 15 REMARK 465 GLY C 16 REMARK 465 SER C 17 REMARK 465 LEU C 18 REMARK 465 ARG C 19 REMARK 465 LEU C 20 REMARK 465 SER C 21 REMARK 465 CYS C 22 REMARK 465 GLU C 23 REMARK 465 ALA C 24 REMARK 465 SER C 25 REMARK 465 ALA C 35 REMARK 465 TRP C 36 REMARK 465 TYR C 37 REMARK 465 ARG C 38 REMARK 465 GLN C 39 REMARK 465 ALA C 40 REMARK 465 PRO C 41 REMARK 465 GLY C 42 REMARK 465 LYS C 43 REMARK 465 GLN C 44 REMARK 465 ARG C 45 REMARK 465 ALA C 46 REMARK 465 ILE C 53 REMARK 465 GLU C 54 REMARK 465 GLU C 55 REMARK 465 ILE C 56 REMARK 465 GLN C 81 REMARK 465 MET C 82 REMARK 465 ASN C 83 REMARK 465 SER C 84 REMARK 465 LEU C 85 REMARK 465 LYS C 86 REMARK 465 PRO C 87 REMARK 465 GLU C 88 REMARK 465 ASP C 89 REMARK 465 THR C 90 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 418 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP B 510 CG OD1 OD2 REMARK 470 GLU B 565 CG CD OE1 OE2 REMARK 470 TYR D 397 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 400 CG CD CE NZ REMARK 470 ARG D 401 CG CD NE CZ NH1 NH2 REMARK 470 TYR D 409 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN D 436 CG OD1 ND2 REMARK 470 LEU D 441 CG CD1 CD2 REMARK 470 TYR D 448 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN D 466 CG CD OE1 NE2 REMARK 470 TYR D 469 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN D 471 CG CD OE1 NE2 REMARK 470 LYS D 493 CG CD CE NZ REMARK 470 PRO D 494 CG CD REMARK 470 LYS D 496 CG CD CE NZ REMARK 470 TYR D 497 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS D 502 CG CD CE NZ REMARK 470 ARG D 505 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 511 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 513 CG CD OE1 OE2 REMARK 470 GLU D 565 CG CD OE1 OE2 REMARK 470 MET D 569 CG SD CE REMARK 470 TYR D 577 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP D 580 CG OD1 OD2 REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 TYR A 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE C 29 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 30 CG CD CE NZ REMARK 470 ASP C 32 CG OD1 OD2 REMARK 470 MET C 34 CG SD CE REMARK 470 TYR C 59 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG C 66 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 LYS C 76 CG CD CE NZ REMARK 470 TYR C 79 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU C 80 CG CD1 CD2 REMARK 470 TYR C 93 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE C 98 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TRP C 111 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP C 111 CZ3 CH2 REMARK 470 GLN C 116 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 89 OH TYR A 93 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR B 397 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 395 -178.72 -66.14 REMARK 500 ASN B 410 -74.94 169.92 REMARK 500 LEU B 411 -37.67 66.96 REMARK 500 SER B 419 -177.18 58.57 REMARK 500 ASN B 421 -27.70 -143.69 REMARK 500 THR B 424 105.58 -54.50 REMARK 500 SER B 451 -23.16 -36.17 REMARK 500 ASN B 468 -116.37 -110.07 REMARK 500 SER B 508 -113.92 54.96 REMARK 500 ASP B 510 -137.11 53.06 REMARK 500 ARG B 511 -93.39 -93.28 REMARK 500 VAL B 514 92.55 33.41 REMARK 500 THR B 533 88.62 55.17 REMARK 500 THR B 564 23.67 -77.82 REMARK 500 GLU B 565 -66.82 69.15 REMARK 500 SER B 583 -78.07 -71.37 REMARK 500 LEU D 389 21.47 -75.85 REMARK 500 THR D 405 106.10 37.98 REMARK 500 TYR D 409 -163.75 -77.36 REMARK 500 THR D 412 -0.91 53.61 REMARK 500 LYS D 413 -107.83 66.58 REMARK 500 ASN D 421 -161.88 -118.55 REMARK 500 LEU D 441 70.41 54.71 REMARK 500 ASN D 468 -150.52 -166.99 REMARK 500 ARG D 511 -73.72 -127.02 REMARK 500 VAL D 534 -75.50 -115.59 REMARK 500 TRP D 535 68.12 36.95 REMARK 500 GLU D 536 -9.78 -149.22 REMARK 500 GLU D 565 -71.62 -46.77 REMARK 500 MET D 569 -166.63 -160.39 REMARK 500 VAL D 575 17.52 -145.36 REMARK 500 THR D 579 -114.41 46.68 REMARK 500 GLU A 23 -173.93 -67.68 REMARK 500 ASP A 32 -138.77 -100.90 REMARK 500 SER A 51 84.24 -155.53 REMARK 500 SER A 91 -173.45 -174.35 REMARK 500 GLN C 3 15.13 -148.89 REMARK 500 VAL C 48 -75.59 -82.57 REMARK 500 ARG C 66 -129.74 177.11 REMARK 500 PHE C 67 92.23 -69.64 REMARK 500 TYR C 110 -143.52 38.69 REMARK 500 REMARK 500 REMARK: NULL DBREF1 9UUF B 383 586 UNP A0A0A0Q7F6_MERS DBREF2 9UUF B A0A0A0Q7F6 383 586 DBREF1 9UUF D 383 586 UNP A0A0A0Q7F6_MERS DBREF2 9UUF D A0A0A0Q7F6 383 586 DBREF 9UUF A 1 121 PDB 9UUF 9UUF 1 121 DBREF 9UUF C 1 121 PDB 9UUF 9UUF 1 121 SEQRES 1 B 204 CYS ASP PHE SER PRO LEU LEU SER GLY THR PRO PRO GLN SEQRES 2 B 204 VAL TYR ASN PHE LYS ARG LEU VAL PHE THR ASN CYS ASN SEQRES 3 B 204 TYR ASN LEU THR LYS LEU LEU SER LEU PHE SER VAL ASN SEQRES 4 B 204 ASP PHE THR CYS SER GLN ILE SER PRO ALA ALA ILE ALA SEQRES 5 B 204 SER ASN CYS TYR SER SER LEU ILE LEU ASP TYR PHE SER SEQRES 6 B 204 TYR PRO LEU SER MET LYS SER ASP LEU SER VAL SER SER SEQRES 7 B 204 ALA GLY PRO ILE SER GLN PHE ASN TYR LYS GLN SER PHE SEQRES 8 B 204 SER ASN PRO THR CYS LEU ILE LEU ALA THR VAL PRO HIS SEQRES 9 B 204 ASN LEU THR THR ILE THR LYS PRO LEU LYS TYR SER TYR SEQRES 10 B 204 ILE ASN LYS CYS SER ARG LEU LEU SER ASP ASP ARG THR SEQRES 11 B 204 GLU VAL PRO GLN LEU VAL ASN ALA ASN GLN TYR SER PRO SEQRES 12 B 204 CYS VAL SER ILE VAL PRO SER THR VAL TRP GLU ASP GLY SEQRES 13 B 204 ASP TYR TYR ARG LYS GLN LEU SER PRO LEU GLU GLY GLY SEQRES 14 B 204 GLY TRP LEU VAL ALA SER GLY SER THR VAL ALA MET THR SEQRES 15 B 204 GLU GLN LEU GLN MET GLY PHE GLY ILE THR VAL GLN TYR SEQRES 16 B 204 GLY THR ASP THR ASN SER VAL CYS PRO SEQRES 1 D 204 CYS ASP PHE SER PRO LEU LEU SER GLY THR PRO PRO GLN SEQRES 2 D 204 VAL TYR ASN PHE LYS ARG LEU VAL PHE THR ASN CYS ASN SEQRES 3 D 204 TYR ASN LEU THR LYS LEU LEU SER LEU PHE SER VAL ASN SEQRES 4 D 204 ASP PHE THR CYS SER GLN ILE SER PRO ALA ALA ILE ALA SEQRES 5 D 204 SER ASN CYS TYR SER SER LEU ILE LEU ASP TYR PHE SER SEQRES 6 D 204 TYR PRO LEU SER MET LYS SER ASP LEU SER VAL SER SER SEQRES 7 D 204 ALA GLY PRO ILE SER GLN PHE ASN TYR LYS GLN SER PHE SEQRES 8 D 204 SER ASN PRO THR CYS LEU ILE LEU ALA THR VAL PRO HIS SEQRES 9 D 204 ASN LEU THR THR ILE THR LYS PRO LEU LYS TYR SER TYR SEQRES 10 D 204 ILE ASN LYS CYS SER ARG LEU LEU SER ASP ASP ARG THR SEQRES 11 D 204 GLU VAL PRO GLN LEU VAL ASN ALA ASN GLN TYR SER PRO SEQRES 12 D 204 CYS VAL SER ILE VAL PRO SER THR VAL TRP GLU ASP GLY SEQRES 13 D 204 ASP TYR TYR ARG LYS GLN LEU SER PRO LEU GLU GLY GLY SEQRES 14 D 204 GLY TRP LEU VAL ALA SER GLY SER THR VAL ALA MET THR SEQRES 15 D 204 GLU GLN LEU GLN MET GLY PHE GLY ILE THR VAL GLN TYR SEQRES 16 D 204 GLY THR ASP THR ASN SER VAL CYS PRO SEQRES 1 A 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 121 PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 A 121 THR ILE PHE LYS VAL ASP THR MET ALA TRP TYR ARG GLN SEQRES 4 A 121 ALA PRO GLY LYS GLN ARG ALA LEU VAL ALA LEU SER PRO SEQRES 5 A 121 ILE GLU GLU ILE PRO THR TYR ALA ASP SER VAL LYS GLY SEQRES 6 A 121 ARG PHE ILE ILE SER ARG ASP ASP ALA LYS LYS THR VAL SEQRES 7 A 121 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SER SEQRES 8 A 121 VAL TYR TYR CYS ASN ALA PHE VAL GLN THR ASP TRP LEU SEQRES 9 A 121 SER PRO SER THR ASN TYR TRP GLY GLN GLY THR GLN VAL SEQRES 10 A 121 THR VAL SER SER SEQRES 1 C 121 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 121 PRO GLY GLY SER LEU ARG LEU SER CYS GLU ALA SER GLY SEQRES 3 C 121 THR ILE PHE LYS VAL ASP THR MET ALA TRP TYR ARG GLN SEQRES 4 C 121 ALA PRO GLY LYS GLN ARG ALA LEU VAL ALA LEU SER PRO SEQRES 5 C 121 ILE GLU GLU ILE PRO THR TYR ALA ASP SER VAL LYS GLY SEQRES 6 C 121 ARG PHE ILE ILE SER ARG ASP ASP ALA LYS LYS THR VAL SEQRES 7 C 121 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SER SEQRES 8 C 121 VAL TYR TYR CYS ASN ALA PHE VAL GLN THR ASP TRP LEU SEQRES 9 C 121 SER PRO SER THR ASN TYR TRP GLY GLN GLY THR GLN VAL SEQRES 10 C 121 THR VAL SER SER HET NAG B 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG C8 H15 N O6 HELIX 1 AA1 PHE B 385 SER B 390 1 6 HELIX 2 AA2 LEU B 411 LEU B 417 1 7 HELIX 3 AA3 GLY B 462 ASN B 468 1 7 HELIX 4 AA4 SER B 524 ILE B 529 5 6 HELIX 5 AA5 ILE D 464 ASN D 468 1 5 SHEET 1 AA1 5 LYS B 400 PHE B 404 0 SHEET 2 AA1 5 SER B 440 SER B 447 -1 O TYR B 445 N LYS B 400 SHEET 3 AA1 5 GLN B 568 GLN B 576 -1 O GLY B 570 N PHE B 446 SHEET 4 AA1 5 THR B 477 THR B 483 -1 N CYS B 478 O ILE B 573 SHEET 5 AA1 5 THR B 424 CYS B 425 -1 N THR B 424 O LEU B 479 SHEET 1 AA2 2 LYS B 496 CYS B 503 0 SHEET 2 AA2 2 ALA B 556 ALA B 562 -1 O SER B 557 N LYS B 502 SHEET 1 AA3 3 LYS D 400 VAL D 403 0 SHEET 2 AA3 3 ILE D 442 TYR D 448 -1 O TYR D 445 N LYS D 400 SHEET 3 AA3 3 MET D 569 THR D 574 -1 O GLY D 572 N ASP D 444 SHEET 1 AA4 4 VAL D 514 PRO D 515 0 SHEET 2 AA4 4 TYR D 497 ARG D 505 -1 N ARG D 505 O VAL D 514 SHEET 3 AA4 4 LEU D 554 VAL D 561 -1 O SER D 559 N TYR D 499 SHEET 4 AA4 4 TYR D 540 TYR D 541 -1 N TYR D 541 O ALA D 556 SHEET 1 AA5 4 GLU A 6 SER A 7 0 SHEET 2 AA5 4 SER A 17 CYS A 22 -1 O SER A 21 N SER A 7 SHEET 3 AA5 4 THR A 77 ASN A 83 -1 O VAL A 78 N CYS A 22 SHEET 4 AA5 4 ARG A 71 ASP A 72 -1 N ASP A 72 O THR A 77 SHEET 1 AA6 5 THR A 58 TYR A 59 0 SHEET 2 AA6 5 ALA A 46 SER A 51 -1 N LEU A 50 O THR A 58 SHEET 3 AA6 5 LYS A 30 GLN A 39 -1 N TRP A 36 O VAL A 48 SHEET 4 AA6 5 SER A 91 GLN A 100 -1 O PHE A 98 N THR A 33 SHEET 5 AA6 5 SER A 107 TRP A 111 -1 O THR A 108 N VAL A 99 SHEET 1 AA7 5 THR A 58 TYR A 59 0 SHEET 2 AA7 5 ALA A 46 SER A 51 -1 N LEU A 50 O THR A 58 SHEET 3 AA7 5 LYS A 30 GLN A 39 -1 N TRP A 36 O VAL A 48 SHEET 4 AA7 5 SER A 91 GLN A 100 -1 O PHE A 98 N THR A 33 SHEET 5 AA7 5 THR A 115 VAL A 117 -1 O THR A 115 N TYR A 93 SHEET 1 AA8 2 LYS C 30 VAL C 31 0 SHEET 2 AA8 2 VAL C 99 GLN C 100 -1 O GLN C 100 N LYS C 30 SHEET 1 AA9 2 ARG C 71 ASP C 72 0 SHEET 2 AA9 2 THR C 77 VAL C 78 -1 O THR C 77 N ASP C 72 SSBOND 1 CYS B 383 CYS B 407 1555 1555 2.03 SSBOND 2 CYS B 437 CYS B 585 1555 1555 2.02 SSBOND 3 CYS B 503 CYS B 526 1555 1555 2.03 SSBOND 4 CYS D 383 CYS D 407 1555 1555 2.03 SSBOND 5 CYS D 425 CYS D 478 1555 1555 2.04 SSBOND 6 CYS D 503 CYS D 526 1555 1555 2.03 SSBOND 7 CYS A 22 CYS A 95 1555 1555 2.03 LINK ND2 ASN B 487 C1 NAG B 601 1555 1555 1.45 CRYST1 192.664 44.476 116.734 90.00 122.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005190 0.000000 0.003339 0.00000 SCALE2 0.000000 0.022484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010186 0.00000 CONECT 6 199 CONECT 199 6 CONECT 387 1497 CONECT 749 4283 CONECT 880 1058 CONECT 1058 880 CONECT 1497 387 CONECT 1511 1687 CONECT 1687 1511 CONECT 1826 2092 CONECT 2092 1826 CONECT 2270 2435 CONECT 2435 2270 CONECT 2996 3572 CONECT 3572 2996 CONECT 4283 749 4284 4294 CONECT 4284 4283 4285 4291 CONECT 4285 4284 4286 4292 CONECT 4286 4285 4287 4293 CONECT 4287 4286 4288 4294 CONECT 4288 4287 4295 CONECT 4289 4290 4291 4296 CONECT 4290 4289 CONECT 4291 4284 4289 CONECT 4292 4285 CONECT 4293 4286 CONECT 4294 4283 4287 CONECT 4295 4288 CONECT 4296 4289 MASTER 423 0 1 5 32 0 0 6 4292 4 29 52 END